Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816481,7610GA69.0% 1067.0 / inf 809P589L (CCT→CTT) JCVSYN2_02215DNA‑directed RNA polymerase subunit beta
Reads supporting (aligned to +/- strand):  ref base G (121/128);  new base A (275/279);  total (400/409)
Fisher's exact test for biased strand distribution p-value = 8.19e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.72e-01

Only 100 of 817 total aligned reads displayed.

AACTTTTCTATATGGAGTTGTAATAAATCCATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTGATCCATAAATTGAGATAATT  >  CP016816/481634‑481887
                                                                                                                               |                                                                                                                              
     ttCTATATGGAGTTGTAATAAATCCATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGGGTg                                                                                                                            <  1:15253/127‑1 (MQ=255)
       cTATATGGAGTTGTAATAAATCCATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTTATCCAATATTTGGTCCTTCTGTTGTTTCAATAGGACAAATTCTTCCATAATGAGAATGGTGAAc                                                                                                                         >  1:1952109/1‑128 (MQ=255)
        tataTGGAGTTGTAATAAATCCATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGGGTGAACg                                                                                                                        >  2:740454/1‑128 (MQ=255)
        tataTGGAGTTGTAATAAATCCATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACg                                                                                                                        <  2:1807565/128‑1 (MQ=255)
          tatGGAGTTGTAAGAAATCCATATTCATTAACTCTTGGATATGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTc                                                                                                                      <  1:868502/128‑1 (MQ=255)
            tGGAGTTGTAATAAATCCATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCAc                                                                                                                    <  2:1723737/128‑1 (MQ=255)
            tGGAGTTGTAATAAATCAATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCAc                                                                                                                    >  1:996612/1‑128 (MQ=255)
              gaggagTATTAAATCCATAATCATTAACTCTTGAATAAGTTGACAAGTTATTTATTAATCCAATATTTGGACCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGa                                                                                                                  <  2:1033402/123‑1 (MQ=255)
                 ttGTAATAAATCCATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACt                                                                                                               <  2:124640/128‑1 (MQ=255)
                 atGTAATAAATCCATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATATGGTCCTTCTGATGTTTCAAAAGGACATATACTACAATAATGAGAAAGGTGAACGTCACGAACt                                                                                                               >  1:1030060/2‑128 (MQ=255)
                     aataaATCCATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTa                                                                                                           >  2:1924067/1‑128 (MQ=255)
                       taaATCCATATTCATTACCTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAAt                                                                                                         <  2:362956/128‑1 (MQ=255)
                       taaATCCATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAAt                                                                                                         >  1:959658/1‑128 (MQ=255)
                       taaATCCATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAAt                                                                                                         <  2:900245/128‑1 (MQ=255)
                       taaATCCATATTCATTAACTCTTGCATAAGTTGAAAAGTTATTAATTAATCCAATAATTGGTAATTATGTTGTTTCAATAGGACAAATTCTTCCATAATGAGAAATGTGATCGTCACGACCTTCTAAt                                                                                                         >  2:1399177/1‑128 (MQ=255)
                        aaaTCCATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATc                                                                                                        <  2:68179/128‑1 (MQ=255)
                         actCCATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTc                                                                                                                      <  1:512005/111‑1 (MQ=255)
                         aaTCCATATTCATTAACTCTTTCATAAGTTGACAAGATATTAATTAAACCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATcc                                                                                                       <  2:1761258/128‑1 (MQ=255)
                          aTCCATATTCATTATCTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCt                                                                                                      <  2:343498/128‑1 (MQ=255)
                          aTCCATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAATCCt                                                                                                      <  1:1088523/128‑1 (MQ=255)
                          aTCCAAATTAATTAACTCTTGCTTAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCt                                                                                                      <  1:1004216/128‑1 (MQ=255)
                           tCCATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTg                                                                                                     <  1:221770/128‑1 (MQ=255)
                            ccATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGGGTGa                                                                                                                           <  2:79173/105‑1 (MQ=255)
                            ccATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGCGTGAACGTCACGAACGTCAAATCCtcc                                                                                                    >  1:1355493/1‑126 (MQ=255)
                                 ttCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTAt                                                                                               >  2:169463/1‑128 (MQ=255)
                                  tCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGctc                                                                                                  <  1:1452177/124‑1 (MQ=255)
                                   cATTAACTCTTGCATAAGTTGCCAAGTTATTAATTAATACAATATTTGGTCATTCTGTTGTTTCTATAGGACAAATTCTTCAATAATGAGAAAGGTGAACGTCACGATGTTCTACTTCTGCTCTAtct                                                                                             >  1:621308/1‑128 (MQ=255)
                                   cATTAACTCTTGCAGAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTAtct                                                                                             <  2:1554082/128‑1 (MQ=255)
                                    aTTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGTTGAACGTCACGAACTTCTAATCCTGCTCTAtctc                                                                                            >  1:1889576/1‑128 (MQ=255)
                                    aTTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACg                                                                                                                   >  1:545846/1‑105 (MQ=255)
                                      tAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTTCTCTATCTCtt                                                                                          >  2:586022/1‑128 (MQ=255)
                                       aaCTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTg                                                                                         >  1:260245/1‑128 (MQ=255)
                                        aCTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGa                                                                                        <  1:1179641/128‑1 (MQ=255)
                                         ctctTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAATc                                                                                                        >  1:637856/1‑111 (MQ=255)
                                          tctTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAATCCAGCTCTATCTCTTGATa                                                                                      >  2:1158325/1‑128 (MQ=255)
                                            ttGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCTATAGGACAAATTCTTCCATAATGAGAAGGGTGAACGTCACGCTCTTCTAATCCTGCTCTATCTCTTGATaac                                                                                    >  2:232125/1‑127 (MQ=255)
                                            ttGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTACTCCTGCTCTATCTCTTGAGaac                                                                                    >  1:576113/1‑127 (MQ=255)
                                            ttGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATaaa                                                                                    >  2:279749/1‑128 (MQ=255)
                                              gCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATATGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAacc                                                                                  <  2:882080/128‑1 (MQ=255)
                                              gCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAaca                                                                                  <  1:173882/128‑2 (MQ=255)
                                               cATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAacca                                                                                 <  2:1519707/128‑1 (MQ=255)
                                                ctacgTTGACAAGTTATTAATTAATACAAGATATGGTCCTTCTGGTGTGTCACTATGACAAAGTCTTCCAAAATGAGAAGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAaccac                                                                                <  2:413049/124‑1 (MQ=255)
                                                aTAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGGGGGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAaccac                                                                                <  1:884490/128‑1 (MQ=255)
                                                aTAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGCGTTTCAATAGGACAAATTCTTCCATAATTAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCGATCTCTTGATACgccac                                                                                >  2:1428806/1‑128 (MQ=255)
                                                  atgtggACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTTTTTCAATACGACAAATTCTTCCATAATGAGAAAGGGGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAAccacca                                                                              <  1:1501342/123‑1 (MQ=255)
                                                  aaGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGATAGGTGAACGTCACGAACTACTAATCCTGCTCTATCTCTTGATAAAccacca                                                                              >  2:1876013/1‑128 (MQ=255)
                                                  aaGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAAccacca                                                                              >  1:780973/1‑128 (MQ=255)
                                                   aGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAg                                                                             >  1:1851919/1‑128 (MQ=255)
                                                      tGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAATACTTCTCTATCTCTTGATAAACCACCAGTTc                                                                          >  1:1209621/1‑128 (MQ=255)
                                                        aCAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCt                                                                        <  1:569586/128‑1 (MQ=255)
                                                             ttattaATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGc                                                                   >  2:720328/1‑128 (MQ=255)
                                                              tattaATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCt                                                                  <  2:616137/128‑1 (MQ=255)
                                                               attaattaATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTg                                                                                         >  2:8258/1‑104 (MQ=255)
                                                                  aattaatCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTa                                                              <  2:651511/128‑1 (MQ=255)
                                                                        acctatagTTGGGCCTTCTGGTGTATCAATAGGACAAATTCTTCGATAATGAGCAGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTAc                                                        <  1:402450/124‑1 (MQ=255)
                                                                           aaTATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGtt                                                     <  1:802297/128‑1 (MQ=255)
                                                                            atatTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAACCCACCAGGTCCTAACGCTGTTAATCTACGttt                                                    >  2:954302/1‑128 (MQ=255)
                                                                             tatTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGACCGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTtta                                                   >  1:430936/1‑128 (MQ=255)
                                                                                 tGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAg                                               <  2:1222595/128‑1 (MQ=255)
                                                                                 tGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAg                                               >  1:701676/1‑128 (MQ=255)
                                                                                  ggTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGt                                              <  2:382935/128‑1 (MQ=255)
                                                                                  ggTCCTGCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGt                                              <  1:1146421/128‑1 (MQ=255)
                                                                                   gTCCTTGTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGtt                                             <  1:354765/128‑1 (MQ=255)
                                                                                   gTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGtt                                             <  1:682846/128‑1 (MQ=255)
                                                                                    tcgttCTGGTGTGTCAATAGGACATATTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTa                                            <  2:1379908/125‑1 (MQ=255)
                                                                                      cTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTTCAGCTGGTAATCTACGTTTATTAGTGAAt                                          >  2:1972148/1‑128 (MQ=255)
                                                                                      cTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAAt                                          >  2:1177752/1‑128 (MQ=255)
                                                                                       ttCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAAtt                                         >  2:315599/1‑128 (MQ=255)
                                                                                        tCTGGTGTTTCAATACGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACTTTTATTAGTTAATTc                                        >  1:1937382/1‑128 (MQ=255)
                                                                                         cTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTAGTAGTTAATTCt                                       >  1:306132/1‑128 (MQ=255)
                                                                                          tGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTcc                                                                         <  1:1410926/93‑1 (MQ=255)
                                                                                           ggtggtTCACTAGGACAACTTCTTCCATCATGAGAAGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGa                                     <  2:1355493/128‑1 (MQ=255)
                                                                                           ggTGATTCAATAGGACAAATTCTTACATAATGAGAAGGGGGAACTTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGa                                     <  2:486970/128‑1 (MQ=255)
                                                                                             tgtTTCAATAGGACAAATTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATa                                   <  2:1141395/128‑1 (MQ=255)
                                                                                             tgtTTCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTAGATTAGATAATTCTGCTa                                   >  2:445592/1‑128 (MQ=255)
                                                                                                ttCAATAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATg                                >  1:155310/1‑128 (MQ=255)
                                                                                                   aaTAGGACAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGt                             >  2:1063091/1‑128 (MQ=255)
                                                                                                       ggACAAATTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAAt                         <  1:1163545/128‑1 (MQ=255)
                                                                                                         atataTTCTTCAATAATTAGAAATGTGAACGTCACGTACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGTTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAAttt                       <  1:1305788/124‑1 (MQ=255)
                                                                                                         aCAAATTCTTCCATACTGAGAATGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAAttt                       <  2:1486669/128‑1 (MQ=255)
                                                                                                         aCAAATTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAAttt                       <  1:1705509/128‑1 (MQ=255)
                                                                                                          cAAATTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTg                      >  1:1770332/1‑128 (MQ=255)
                                                                                                           aaaTTCTTCCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAACCCACCAGGTCCTAAAGCTGTTAATCTACGTTGATTATGTAATTCTGATAATGGGTTTATTTGa                     >  2:1287244/1‑128 (MQ=255)
                                                                                                             aTTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGGTAATCTAGGTTTATTAGTTATGTCTGAATCTGGGTGATTGTGATc                   >  2:1457451/1‑128 (MQ=255)
                                                                                                               tcttcCATAATGAGAAGGGTGACCGTCACGAACGTCTAATCCGGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGGTACTCGACGTGTATATGTTATTTCTGATAATGGGGTAATTTGATCCa                 >  1:1674855/1‑128 (MQ=255)
                                                                                                                cttcCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTGATCCAt                >  1:741308/1‑128 (MQ=255)
                                                                                                                 ttcCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTGATCCATa               >  1:1618701/1‑128 (MQ=255)
                                                                                                                 ctcCATACTGAGCAGGGGGAACGTCACGAACTTCTACTCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTGATCCATa               <  1:835629/127‑1 (MQ=255)
                                                                                                                  tcCATAATGAGAAGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATTGCTTAATTTGATCCATaa              >  1:1590540/1‑128 (MQ=255)
                                                                                                                  tcCATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTGATCCATaa              <  1:59890/128‑1 (MQ=255)
                                                                                                                   ccATAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTGATCCATaaa             <  1:1058348/128‑1 (MQ=255)
                                                                                                                      tAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAACCCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTGATCCATAAATTg          >  2:56025/1‑128 (MQ=255)
                                                                                                                      tAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTGATCCATAAAttt          >  1:459647/1‑127 (MQ=255)
                                                                                                                      tAATGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTGATCCATAAATTg          >  1:1382810/1‑128 (MQ=255)
                                                                                                                       aaTGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTGATCCATAAATTga         >  2:1100814/1‑128 (MQ=255)
                                                                                                                        aTGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTGATCCATAAATTgag        >  1:93072/1‑128 (MQ=255)
                                                                                                                         tGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTGATCCAt                <  1:1257051/119‑1 (MQ=255)
                                                                                                                         tGAGAAAGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTGATCCATAAATTgaga       >  1:206718/1‑128 (MQ=255)
                                                                                                                            gaAGGGTGCCCGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTGATCCATAAATTGAGATaa    <  2:1606062/128‑1 (MQ=255)
                                                                                                                             aaGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTGATCCATAAATTGAGATAAt   <  2:52422/128‑1 (MQ=255)
                                                                                                                               |                                                                                                                              
AACTTTTCTATATGGAGTTGTAATAAATCCATATTCATTAACTCTTGCATAAGTTGACAAGTTATTAATTAATCCAATATTTGGTCCTTCTGGTGTTTCAATAGGACAAATTCTTCCATAATGAGAAGGGTGAACGTCACGAACTTCTAATCCTGCTCTATCTCTTGATAAACCACCAGGTCCTAAAGCTGTTAATCTACGTTTATTAGTTAATTCTGATAATGGGTTAATTTGATCCATAAATTGAGATAATT  >  CP016816/481634‑481887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑