Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681620,9350CT67.7% 919.4 / inf 776Q174* (CAA→TAA) JCVSYN2_00070tetracycline resistance ribosomal protection protein Tet(M)
Reads supporting (aligned to +/- strand):  ref base C (124/125);  new base T (262/259);  total (389/387)
Fisher's exact test for biased strand distribution p-value = 9.39e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.50e-02

Only 100 of 788 total aligned reads displayed.

CCAAAATGGAATTGATTTATCAACGGTTTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATAATTGTTCCCTGTTCCCTG  >  CP016816/20808‑21061
                                                                                                                               |                                                                                                                              
ccAAAATGGAATTGATTAATCAACGGTTTATCAGGATATTAAAGAGAAAATTTCTGCCGAAATTGTAATCAAACAGCAAGTAGAACTGAAACCTAATATGACTGTGACGAACTTTACCGACTCTCAAc                                                                                                                                >  1:460716/1‑128 (MQ=255)
   aaaTGGAATTGATTTATCAACGGTTTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGATTCTGaataat                                                                                                                             >  1:1790556/1‑128 (MQ=255)
   aaaTGGAATTGATTTATCAACGGTTTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGaataat                                                                                                                             >  1:1673268/1‑128 (MQ=255)
    aaTGGAATTGATTTATCAACGGTTTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATg                                                                                                                            >  1:593804/1‑128 (MQ=255)
    aaTGGAATTGATTTATCAACGGTTTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTATACCGAATCTGCACaaag                                                                                                                            >  1:1332227/1‑126 (MQ=255)
    aaTGGAATTGATTTATCAACGGTTTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGCAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATg                                                                                                                            >  1:435657/1‑128 (MQ=255)
      tGGAATTGATTTATCAACGGTTTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATggg                                                                                                                          >  2:976489/1‑128 (MQ=255)
         aaTTGATTTATCAACGGTTTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTATACCGAATCGGAATAATGGGATa                                                                                                                       >  2:1596063/1‑128 (MQ=255)
               tttATCACAGGTTTATCAGGATATTAAAGAGAAACTTTCTGCAGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTaa                                                                                                                 <  1:849986/128‑1 (MQ=255)
               gttATCAACGTTTTTTCAGGTTATTAAAGAGACCCTTGCTGACGATATTGTAATCATACAGAAGGCAGAACTGTATCCTAATATGTGGGTGACGAACTTTACCGAAGCTGAATAATGGGATACGGTaa                                                                                                                 <  1:1248442/127‑1 (MQ=255)
                ttATCAACGGTTTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTAACGAATCTGAAAAATGGGTTACGGTatt                                                                                                                >  1:1968895/1‑126 (MQ=255)
                 tctccaCGGTTTATCAGGATATTAACGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGGGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATa                                                                                                               <  2:515824/123‑1 (MQ=255)
                   tctaCGGATTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAAGCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATaga                                                                                                             <  1:717365/125‑1 (MQ=255)
                    cAACGGTTTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGTTAGAACTGTATACTAATATGTGTGTGACTAACTTTACCGAATCTGAATAATGGGATACGGTAATagat                                                                                                            >  2:1112474/1‑127 (MQ=255)
                    cAAAGGTTTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAATGTAGAACTGTATCCTAATATGTGTGTTACGAACTTTACCGAATCTGAATAATGGTATACGGTAATagag                                                                                                            <  1:1186627/128‑1 (MQ=255)
                     aaCGGTTTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTTACTAACTTTACCGAATCTGCATAATTGGATACTGTAATAGAgg                                                                                                           >  2:1440522/1‑128 (MQ=255)
                      aCGGTTTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCATACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGTGATACGGTAATAGAggg                                                                                                          <  2:1239259/128‑1 (MQ=255)
                        ggTTTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGACGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGaa                                                                                                        <  2:1711505/128‑1 (MQ=255)
                        ggTTTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGaa                                                                                                        <  1:185507/128‑1 (MQ=255)
                          tttATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAAc                                                                                                      <  2:1652858/128‑1 (MQ=255)
                          tttATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAAc                                                                                                      <  1:277101/128‑1 (MQ=255)
                            tATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTTTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGTGATACGGTAATAGAGGGTAActa                                                                                                    >  2:1276958/1‑126 (MQ=255)
                                  gATATTAAAGAGTAACTTTCTGCCGAAATTGTAATCAAACATAATGTAGAACTGTATACTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGAAATAGAGGGAAACGATGACCt                                                                                              <  2:415845/128‑1 (MQ=255)
                                   atatTTAAGAGAAACTTTCTGCCGAATTTGTAATCTATCAGAAGGTAGAACTGTATCCTTATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCtt                                                                                             <  1:1217121/128‑1 (MQ=255)
                                   atatTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACTAACTTTACCGAATCTGAATAATGGGATACGCTAATAGAGGGAACCGATGACCta                                                                                             >  2:1918951/1‑127 (MQ=255)
                                   atatTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCtt                                                                                             >  1:534232/1‑128 (MQ=255)
                                   agatTAAAGAGAAACTTTCTGCCGAAATTGTACTCAAACAGAAGGTAGAACTGTATCCTAATAGCTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCtt                                                                                             <  2:347994/126‑1 (MQ=255)
                                      ttAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTa                                                                                          >  2:495220/1‑128 (MQ=255)
                                       tAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTTTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTag                                                                                         <  1:919591/128‑1 (MQ=255)
                                       tAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTag                                                                                         >  2:1550086/1‑128 (MQ=255)
                                        acagagAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTaga                                                                                        <  2:1790556/126‑1 (MQ=255)
                                        aaaGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTaga                                                                                        <  1:1110284/128‑1 (MQ=255)
                                           gagaAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGaa                                                                                     <  1:1001913/128‑1 (MQ=255)
                                           gagaAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTGTTAGAGaa                                                                                     >  1:744464/1‑128 (MQ=255)
                                              aaaCTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGTATACGGTAATAGAGTAAAACTATAACATTTTAGAGAAata                                                                                  >  2:1774650/1‑128 (MQ=255)
                                              aaaCTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAtata                                                                                  >  1:512648/1‑128 (MQ=255)
                                              aaaCTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAata                                                                                  >  2:1481756/1‑128 (MQ=255)
                                                aCTTTCTGCAGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAatata                                                                                <  1:1814251/128‑1 (MQ=255)
                                                  ttgatgacGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATg                                                                              <  1:1735840/121‑1 (MQ=255)
                                                   ttCTGCCGATATTGTTATCAAACAGACGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGt                                                                             <  1:1867662/128‑1 (MQ=255)
                                                     cTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTcc                                                                           >  2:788280/1‑128 (MQ=255)
                                                     cTGACGAAATTGTAATCAAACAGAAGGTAGAACTGTATCATAATATGTGTGTGACGAACTTTACCGGATCTGATTAATGCGATACTGTAATAGAGGGAAACGATGACCTTTTATAGAAAGATATggac                                                                           >  1:977490/1‑125 (MQ=255)
                                                      tGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTa                                                                                                                  >  2:1614379/1‑88 (MQ=255)
                                                      tGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTGTTAGAGAAATATATGTCCg                                                                          >  2:961845/1‑128 (MQ=255)
                                                      tGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCg                                                                          <  2:704105/128‑1 (MQ=255)
                                                           aaaTTGTAATCAAACAGTAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTaaa                                                                     <  2:1348812/128‑1 (MQ=255)
                                                            aaTTGTAATCAATCAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCTAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAAt                                                                    <  1:1279621/128‑1 (MQ=255)
                                                            aaTTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAAt                                                                    <  2:1139621/128‑1 (MQ=255)
                                                            aaTTGAAATGAAACAGAAGGTAGAACTGTATGCTAATATGTGTGTGACGAACTTTCCCGAATCTGAACTATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAAt                                                                    <  1:41148/128‑1 (MQ=255)
                                                               tGTAATCAAACAGAAGTTAGAACTTTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGCATAAGGTAAAATAGGGAAACGATGACCTTTTAGAACAATATAAGACCTCTAAATCAt                                                                 >  1:681073/1‑128 (MQ=255)
                                                               tGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCAt                                                                 <  2:1021784/128‑1 (MQ=255)
                                                               tGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCAt                                                                 <  2:1379866/128‑1 (MQ=255)
                                                                 tAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAATTCATTa                                                               >  1:215248/1‑128 (MQ=255)
                                                                 tAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTa                                                               <  1:874034/128‑1 (MQ=255)
                                                                 tAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGAAGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGATGGAAACGATGACCTTTTAGATAAATATATGTCCGGTAAATCATTa                                                               <  1:149845/128‑1 (MQ=255)
                                                                  aaTCTAACAGTAGGTAGAACTGTATCCTAATATGTTTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCTGTAAATCATTAg                                                              <  2:590377/128‑1 (MQ=255)
                                                                     cAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAg                                                           <  2:668818/128‑1 (MQ=255)
                                                                     cAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATTGGATACTGTAATATAGGGAAACGATGAACTTTTAGAGAAATATATGTACTGTAAATCATTATAAg                                                           >  1:1625287/1‑128 (MQ=255)
                                                                       aaCAGAAGGTAGAACTGTATCCTAATATGTGTGAGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCa                                                         >  2:1842663/1‑128 (MQ=255)
                                                                        aCAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGATATATATTGCCGGTAAATCATTAGAAGCag                                                        >  1:1378829/1‑127 (MQ=255)
                                                                         cAGTAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCAtt                                                       <  2:120076/128‑1 (MQ=255)
                                                                            aaGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGa                                                    <  2:722217/128‑1 (MQ=255)
                                                                              ggTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAAc                                                  >  1:630988/1‑128 (MQ=255)
                                                                                tAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAAc                                                                                                      <  1:1565884/74‑1 (MQ=255)
                                                                                tAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAAc                                                                                                      >  2:1565884/1‑74 (MQ=255)
                                                                                 aGAACTGTATCCTACTATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCg                                               <  2:917251/128‑1 (MQ=255)
                                                                                 aGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTCGAACTCg                                               >  2:637357/1‑128 (MQ=255)
                                                                                    aCTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGCCCTTTTAGAGAAATATATGTCCGGTAATTCATTAGAAGCATTGTAACTCGAAc                                            >  1:141442/1‑128 (MQ=255)
                                                                                    aCTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAAc                                            >  1:1452979/1‑128 (MQ=255)
                                                                                     cTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACa                                           >  1:790896/1‑128 (MQ=255)
                                                                                     cTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACa                                           <  2:454707/128‑1 (MQ=255)
                                                                                         aTCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAagag                                       >  2:261330/1‑128 (MQ=255)
                                                                                          tcttAATATGTTAGTGACTATCTTTACCGAATCTGAATCATGGGATACGGTAATAGAGGGCAACGATGTCCTTTTAGAGATATTTATGTCAGGTAAATCTTTAGAAGCATTGGAACTCGAACAAGAgg                                      <  1:1922900/125‑1 (MQ=255)
                                                                                          tcatAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGTAACGATGCCCAGTTAGAGAAATATATGTCCGGAAAGTCATTAGAAGCATTGGAACTCGAACAAGAgg                                      >  1:1066692/4‑128 (MQ=255)
                                                                                           ccTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGTTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGa                                     <  2:209969/128‑1 (MQ=255)
                                                                                            cTAATATGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGaa                                    >  1:1606322/1‑128 (MQ=255)
                                                                                             tAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGaaa                                   <  2:1520884/128‑1 (MQ=255)
                                                                                             tAATATGGGTGGGACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGaaa                                   <  2:1682268/128‑1 (MQ=255)
                                                                                               atatGTGTGTGACGAACTTTACCGAATCTGAATAATGGGATACTGTAATAGATGGAAACGATGACCTTTTAGAGAAATATATTTCAGGTAAATCATTAGAAGCATTGGAACTCGAACAATAGGAAAGc                                 >  2:1086903/1‑128 (MQ=255)
                                                                                                 atGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCAt                               >  1:479261/1‑128 (MQ=255)
                                                                                                      tgtgACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAAGCATTAGAAGCATTGGAACTCGAACAAGAGGAACGCATAAgtt                          >  2:390809/1‑126 (MQ=255)
                                                                                                       gtgACGAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGAtt                         <  2:868290/128‑1 (MQ=255)
                                                                                                            gAACTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATa                    <  2:1065133/128‑1 (MQ=255)
                                                                                                            gAACTTTACCGAATCAGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATa                    >  2:1821271/1‑128 (MQ=255)
                                                                                                              aCTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATAAt                  <  1:945061/128‑1 (MQ=255)
                                                                                                              aCTTTACCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATAAt                  <  1:1480404/128‑1 (MQ=255)
                                                                                                                   aCCGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGGAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATAATtgttc             >  1:367861/1‑128 (MQ=255)
                                                                                                                    ccGAATCTGAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATAATtgttcc            >  1:317208/1‑128 (MQ=255)
                                                                                                                    ccGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGAATTCATAATtgttca            >  1:1033882/1‑127 (MQ=255)
                                                                                                                        aTCTGAATAATGCGATAATGTAATAGATGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATAATtgttccctgt        <  1:1083675/128‑1 (MQ=255)
                                                                                                                        aTCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAATCATTGGAACTCGAACAAGAGAAAAGCATAAGATTTCATAAAtgttccctct        >  1:564357/1‑126 (MQ=255)
                                                                                                                         tCTGAATAATGTGATAATTTAATATTGGTAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATAATtgttccctgtt       <  2:1330563/128‑1 (MQ=255)
                                                                                                                         tCTGAATAATGGGATACGGTAATAGAGGGAAACGATGAGCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATAATtgttccctgtt       <  2:540530/128‑1 (MQ=255)
                                                                                                                         tCTGAATAATGGCATACGGTAATAGAGGGAAACGATGACCATTTAGAGATATATATGTCCGTTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATAATtgttccctgtt       <  1:1774650/128‑1 (MQ=255)
                                                                                                                         tCTGAATAAGGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATAATtgttccctgtt       <  2:1970981/128‑1 (MQ=255)
                                                                                                                          cTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATAATtgttccctgttc      <  2:280908/128‑1 (MQ=255)
                                                                                                                          cTGAAAAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATAATtgttccctgttc      <  1:665967/128‑1 (MQ=255)
                                                                                                                            gAATAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATAATtgttccctgttccc    <  1:1526145/128‑1 (MQ=255)
                                                                                                                              aCAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATAATTGttccctgttccctg  >  2:757184/1‑128 (MQ=255)
                                                                                                                              aCAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATAATTGttccctgttccctg  <  1:1152192/128‑1 (MQ=255)
                                                                                                                               |                                                                                                                              
CCAAAATGGAATTGATTTATCAACGGTTTATCAGGATATTAAAGAGAAACTTTCTGCCGAAATTGTAATCAAACAGAAGGTAGAACTGTATCCTAATATGTGTGTGACGAACTTTACCGAATCTGAACAATGGGATACGGTAATAGAGGGAAACGATGACCTTTTAGAGAAATATATGTCCGGTAAATCATTAGAAGCATTGGAACTCGAACAAGAGGAAAGCATAAGATTTCATAATTGTTCCCTGTTCCCTG  >  CP016816/20808‑21061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑