Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681634,9451.A43.4% 88.4 / inf 587intergenic (+49/+117)JCVSYN2_00105/JCVSYN2_00110ABC transporter permease/cell division protein FtsH
Reads supporting (aligned to +/- strand):  ref base . (109/223);  new base A (241/14);  total (350/237)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.35e-05

Only 100 of 692 total aligned reads displayed.

CTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTT  >  CP016816/34818‑35072
                                                                                                                                       |                                                                                                                                     
 tttACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTTAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTAGATTTTTATATTTACTATA‑‑‑G‑‑‑‑a                                                                                                                                   >  2:168671/1‑128 (MQ=255)
  ttACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGAGTTTAGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑aa                                                                                                                                 >  2:1840221/1‑128 (MQ=255)
         tttATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑aaaaaaaaa                                                                                                                          >  2:552453/1‑128 (MQ=255)
           ttccgatctCAACAAAAATATTAACAAATTCTTAACCAATTACAATGCTAATTTAATTTTATTAAAAATAAAATATTAAACAAAATACATTTTGTTTGGTTTTTTTATTTACTTTT‑‑‑T‑‑‑‑aaaaaaaaaaa                                                                                                                        <  2:623945/120‑1 (MQ=255)
           tATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑aaaaaaaaaaa                                                                                                                        >  1:1920857/1‑128 (MQ=255)
           tATGAGTTTAAACAAAAAGAGTAAGAAATGATGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACAAAATACATAGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑aaaaaaaaaaa                                                                                                                        >  1:453032/1‑128 (MQ=255)
            aTGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑T‑‑‑‑aaaaaaaaaaaa                                                                                                                       >  2:1263106/1‑128 (MQ=255)
               aGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGAGTATGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑aaaaaaaaaaaaaaa                                                                                                                    >  1:738100/1‑128 (MQ=255)
                  ttCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGATTTTTTTATTTACTATT‑‑‑T‑‑‑‑aaaaaaaaaaaaaaaaat                                                                                                                 >  2:1189425/1‑125 (MQ=255)
                    caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑aaaaaaaaaaaaaaaaaaat                                                                                                               >  2:1585676/1‑126 (MQ=255)
                    caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑aaaaaaaaaaaaaaaaaaaa                                                                                                               >  2:1293028/1‑126 (MQ=255)
                    caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGATAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTAGGTTTTTTTATTTACTATT‑‑‑T‑‑‑‑aaaaaaaaaaaaaaaaaaaa                                                                                                               >  2:133127/1‑126 (MQ=255)
                     aacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑aaaaaaaaaaaaaataaaaaa                                                                                                              >  2:747154/1‑121 (MQ=255)
                      aaaaaaaTATTTAGAAATGTTTAACCATTTAAAATTTTAATTTATGTTTTTTAAAAATAAAATATTAAACAAAATTAATTGTTTTTGGTTTTTTTTTTTAATATTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAAataatat                                                                                                              <  1:548497/126‑1 (MQ=255)
                       caaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑ATAAAAAAAAAAAaaaataaaat                                                                                                         >  1:1636123/1‑128 (MQ=255)
                        aaaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAAataatataa                                                                                                           >  2:428035/1‑128 (MQ=255)
                        aaaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAAaaaaaaaaat                                                                                                         >  2:1455309/1‑128 (MQ=255)
                         aaaaTAGTAAGAAATGCTGAACCAAGTAAAATGCTAAGGGAAGTTGATTAATAATAAAACATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTAATATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAAATAATATAAtt                                                                                                        <  2:1512378/128‑1 (MQ=255)
                         aaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GAA‑‑AAAAAAAAAAAAAAataatataa                                                                                                           >  2:1969881/1‑128 (MQ=255)
                            agagTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑aaaaaaaaaaaaaaaaaaaaaaaatttt                                                                                                       >  1:1119404/1‑118 (MQ=255)
                                taataaATGCTTAACAAAGAACAATGCTAATTTAATTTTATGAAAAATAAAATATAAAACCAAATACTTTGTGTTTGGTTTTTTAATTTACAATT‑‑‑GA‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATa                                                                                                  <  2:1409285/128‑1 (MQ=255)
                                  attaaTGCTGAAACAAATACAATTGTAATGTTATTTGTTTAATAATAAAATATTAAACCAAATACATTTTGTTTGGTTTTTTTTTTTAATTTT‑‑‑T‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACta                                                                                               <  1:1770220/125‑1 (MQ=255)
                                  aaaaaTGATGAACAAAGTACAATGCTAAGTGAAGTTGTTTAATAATAAAATTTTAAACCAAATACATTGTGTTTGGTTTTTTTTTTTAATATT‑‑‑‑‑‑‑TAAAAAAAAAAAAAATAATATAATTTGCATACtat                                                                                              <  1:1006183/126‑1 (MQ=255)
                                   taaaTGGTGAACCAATTACAATTCTAATTTAAGTTTATTAATAATAAAATATTAAACCAAATACATTTTTTTTGGTTTTTTTTTTTAATATTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACta                                                                                               <  1:685607/127‑1 (MQ=255)
                                    aaaTGCTTAACCAAGTAAAATTTTAAGTTAAGTTTATTAATAATAAAATATTAAACAAAATAAATTGTGTTTGGTTTTTTTATTTAATATTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACtat                                                                                              <  2:1491509/128‑1 (MQ=255)
                                    aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAAATAATAAAATTTGAATAAtata                                                                                             >  2:171253/1‑128 (MQ=255)
                                     aaTGCTGAACCTAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GAA‑‑AAAAAAAAAAAAAAATAATATAATTTTAATAatat                                                                                              >  2:649749/1‑128 (MQ=255)
                                     aaTGATCAACAAATTAAAATTCTAAGTTAATTTTATTAAAAAAAAAACATAAAACCAAATAATTTGTGTTTGGTTTTTTTATTTAATTTTTAA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACtat                                                                                              <  2:100188/128‑1 (MQ=255)
                                      aTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GAA‑‑AAAAAAAAAAAAAAATAAAATAATTTGCATACtata                                                                                             >  1:1477549/1‑128 (MQ=255)
                                      aTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAAATAATATAATTTTAATAATATaa                                                                                            >  1:911734/1‑128 (MQ=255)
                                       tGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAAATAAAAAAAATTAAAAAATATaaaa                                                                                          >  1:1387810/1‑128 (MQ=255)
                                             aCCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAAATAATATATTTTGAATAATATAAAAAATTg                                                                                     >  1:520438/1‑128 (MQ=255)
                                              ccAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGTTTTTTTTATTTACTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAAAAAATATAATATAAATAAAATaaaaaaattt                                                                                    >  1:334034/1‑124 (MQ=255)
                                                  ttaaaaTGCTATTTGAATTTGTTTAATAAAAAAAAATTAAAAAAAAAACATTTTTTTTGGTTTTTTTATTTAATATTTAAA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGttt                                                                                  <  2:834477/124‑1 (MQ=255)
                                                  gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑T‑‑‑‑AAAAAAAAAAAAAAAAAAAAAATATTTTCAAAAAAAAAAAAATTAttttt                                                                                >  1:1240088/1‑128 (MQ=255)
                                                  gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAAAAAATATAATTTGCATAAAATAAAAAATTTTTTTTc                                                                               >  2:86617/1‑128 (MQ=255)
                                                       aTGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAAATAATATAATTTAAATAAAATAAAAAATTTTTTTTAAAAt                                                                           >  1:1729237/1‑128 (MQ=255)
                                                        tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAATAATATAATTTGCATAATATAAAAATTTGTTTTTCAAATaatt                                                                       >  2:1863238/1‑126 (MQ=255)
                                                          cTAAGTTAATTTTTTGATTAAAAAAATTTTAAACAAATTAATTTGTTTTTGGTTTTTTTTTTTATTATTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAAATATTATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAg                                                                        <  1:36064/128‑1 (MQ=255)
                                                          cTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAAAAAATATAATTTGATAACTTTAAAAAATTGttttaaaattact                                                                        >  1:1049970/1‑119 (MQ=255)
                                                                taaGTTTATTAATAAAAAAATATTAAAAAAAAAAAATTTTTTTTGTTTTTTTTTTTTAATATT‑‑‑T‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAg                                                                 <  2:346308/127‑1 (MQ=255)
                                                                 atgTTTATTAATAATAAAATATTAAACCAAATAAATTGTTTTTGGTTTTTTTATTTAATATTTAA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCa                                                                  <  2:394169/126‑1 (MQ=255)
                                                                    ttttttattaataaAATATTAAACAAAATAATTTTGTTTTGGTTTTTTTATTTAATATTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAg                                                              <  2:1092869/120‑1 (MQ=255)
                                                                    ttGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAAAAAAAAAAAATTACATAATAAAAAAAATTTTATTTAaaaaaataataaattta                                                              >  1:571760/1‑117 (MQ=255)
                                                                    ttGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATA‑‑‑GAA‑‑AAAAAAAAAAAAAAAAAAAATAATATAAATAATAAAAAAAAATATTTTTAAAAAAATAATTCaaaa                                                               >  1:639494/1‑125 (MQ=255)
                                                                     tttattataataataataTTAAACCAAATAAATTGTGTTTTGTTTTTTTATTTATTTTTTAA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGa                                                               <  1:1271561/122‑1 (MQ=255)
                                                                      gatgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAATAATAAAAAAAATTTTTTTTCAAATAATTATTAAgtatta                                                            >  1:156479/1‑123 (MQ=255)
                                                                       tttcctatctaaaGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTaa                                                           <  2:47464/118‑1 (MQ=255)
                                                                            taataaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GAA‑‑AAAAAAAAAAAAAAAAAATATAATTTGAATAATATAAAAAATTTTTTTTCAAATAATTATTAATAAATAAAttt                                                       >  1:1139462/1‑128 (MQ=255)
                                                                             aataaAAGATTAAACCAGATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAAATAATATATTTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTaa                                                     >  2:1731427/1‑128 (MQ=255)
                                                                             aataaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GAA‑‑AAAAAAAAAAAAAAATAATATAATTTTAATAATATAAAAAATTTTTTTTAAAATAATTATTAATTAATAAATTTa                                                      >  2:297875/1‑128 (MQ=255)
                                                                             aataaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAATAAAATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCATCATTAAATTaaaaaa                                                  >  1:237737/1‑128 (MQ=255)
                                                                              ataaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GAA‑‑AAAAAAAAAAAAAAATAATATAATTTGCAAACAATAAAAAATTTTTTTTAAAATAAGTATTAAGTATTAAATTTaa                                                     >  1:1703767/1‑128 (MQ=255)
                                                                              aataaatttttAAAAAAAATAAATTTTGTTTTTTTTTTTTATTTAATTTTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTaa                                                     <  1:1585676/119‑1 (MQ=255)
                                                                                 aaaGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTTTTTTTCAAATAATAATTCAGGATTAAATTTAAAAAAc                                                >  2:1372947/1‑128 (MQ=255)
                                                                                     taTTAAAACTAATAAATTTTTTTTTTTTTTTTTATTTATTATTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCATGAGTAAATTTAAAAAACCa                                              <  2:1952012/127‑1 (MQ=255)
                                                                                     gATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GAAAAAAAAAAAAAAAAAAATATTATAATTTTAATAATAAAAAAAATTATTTTAAAAATAATTATAAATTATTAAATTTaaaaaa                                                 >  2:202879/1‑128 (MQ=255)
                                                                                      aTTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAATAATTAATTATTAAATTTAAAAAACaaa                                             >  1:1353779/1‑128 (MQ=255)
                                                                                       tttaaaaaaaTACTATGTTTTTGGTTTTTTTATTTAATATTAAA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCaa                                             <  1:97445/121‑1 (MQ=255)
                                                                                        tAAACCAAATACATTGTGTTTGGTTTTTTTATTTTCTATT‑‑‑GAA‑‑AAAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAATTATTAAGTATTAAATTTaaaaaaaaaaa                                            >  2:1113369/1‑123 (MQ=255)
                                                                                         aaaCCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAAAAAATATAATTTTCATAAAATAAAAAATTTTTTTTCAAAAAATTAATAATAATTAAAATTAAAAAACCaaaat                                          >  1:1205563/1‑125 (MQ=255)
                                                                                           acaaaaTACATTGTGTTTGGTTTTTTTATTTAATATTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAttt                                        <  1:1794310/125‑1 (MQ=255)
                                                                                             caaattatttGTGTTTGGTTTTTTAATTAAATATT‑‑‑T‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                     <  2:1039655/120‑1 (MQ=255)
                                                                                             cAATTAAATTTTGTTTGTTTTTTTTATTTAATATT‑‑‑T‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                     <  2:1919870/128‑1 (MQ=255)
                                                                                             aaaaTATATTGTGTTTGGTTTTTTTATTTAATATTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtat                                      <  1:1671987/127‑1 (MQ=255)
                                                                                              ataTACTTTTTGTTTGTTTTTTTTATTTAATTTTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                     <  1:838545/126‑1 (MQ=255)
                                                                                              aaataaatTTTTTTTTTTTTTTTTATTTACAATT‑‑‑T‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATaa                                    <  2:1778405/128‑1 (MQ=255)
                                                                                              aaaTACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GAAAAAAAAAAAAAAAAAAAAAAATAATTTTCATAATAAAAAAAAATTTTTTTAAAAAAATTATTAAGTATTAAATTTaaaaaaaaaaaaataa                                       >  2:269386/1‑118 (MQ=255)
                                                                                              aaaTACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GAA‑‑AAAAAAAAAAAAAAATAATATAATTTGAATACTATAAAAAATTTTTTTTAAAATAAATATTAATTATTAATTTAAAAAAACCAAAAGTtat                                      >  1:1511372/1‑128 (MQ=255)
                                                                                              aaaTACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑GAA‑‑AAAAAAAAAAAAAAAAAATATAATTTGAATAATATAAAAAATTTTTTTTCAAAAAATAATTAAGTATTAATTTTAAAAAACAAAAATTtat                                      >  1:1834254/1‑128 (MQ=255)
                                                                                               aaaaaaTTTTGTTTTGTTTTTTTATTTAATATTTAA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                     <  2:687598/123‑1 (MQ=255)
                                                                                               aaTACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATAATATAAAAAATTTTTTTTCAAATAATTATTAAGGAGTAAATTTAAAAAACAAAGAGTTATaaa                                   >  2:162389/1‑128 (MQ=255)
                                                                                               aaTACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAAAATATATAATTTTGAATAATTAAAAAATTTTTTTTAAAAATAATTTTAAAGTATAAATTTTAAAAAACaaatatattaaa                                   >  2:508276/1‑118 (MQ=255)
                                                                                                aaaCATTTTGTTTGGTTTTTTTTATAACTATTTAAA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                     <  2:1562732/126‑1 (MQ=255)
                                                                                                  aaaTTGTTTTTGGTTTTTTTATTTAATATT‑‑‑T‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCt                                <  2:1431304/126‑1 (MQ=255)
                                                                                                   taTTTTGTTTGGTTTTTTTTTTTAATATT‑‑‑T‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCtt                               <  1:388744/127‑1 (MQ=255)
                                                                                                    tttGTGTTTTGTTTTTTTATTTATTATT‑‑‑T‑‑‑‑ATAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCtt                               <  1:788063/127‑1 (MQ=255)
                                                                                                    attttttttttttttttttATTTAATATTTTAA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTTCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAAt                                  <  1:290991/116‑1 (MQ=255)
                                                                                                     ttGTGTTTGTTTTTTTTTTTTATAATTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAAGTGTATTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTg                              <  2:1814405/128‑1 (MQ=255)
                                                                                                      tgtgTTTGGTTTTTTTATTTACTATT‑‑‑GAAAAAAAAAAAAAAAAAAAAATAAAATTTGCATAAAAAAAAAAATTTTTTTTAAAAAAATTATTAAGGAGTAAATTTAAAAAACCAATATTTATTAAACtt                               >  1:1305492/1‑128 (MQ=255)
                                                                                                        tttttttttttttttATTTTAAATT‑‑‑T‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtt                           <  2:1132180/120‑1 (MQ=255)
                                                                                                        ttttttGTTTTTTTTATTTAATATT‑‑‑G‑‑‑‑AAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtttt                         <  2:766438/125‑1 (MQ=255)
                                                                                                        tgtTTGGTTTTTTTATTTACTATT‑‑‑GAAAAAAAAAAAAAAAAAAAAATATAATTTGAATAATAAAAAAAATTTTTTTTAAAAAAATTATAAATAATTAAATTAAAAAAAAAAAAATTTATAAAtaatgt                             >  2:899747/1‑123 (MQ=255)
                                                                                                         gtTTGGTTTTTTATTTACTATT‑‑‑GAAAAAAAAAAAAAAAAAAAAAAATAATTTGAATAAAATAAAAAATTTTTTTTCAAATAAGAATTCAGGATTAAATTTAAAAAACAAAGAGTAATaaaaattgttt                           >  1:1871890/1‑120 (MQ=255)
                                                                                                          ttttGTTTTTTTTATTTAATATTT‑‑‑T‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGttt                          <  2:369130/127‑1 (MQ=255)
                                                                                                           ttttGTTTTTTTATTTAATTTTTAA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGttt                          <  2:1066533/128‑1 (MQ=255)
                                                                                                           tttGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTTTTTTTCAAATAATTATTCAGGAGTAAATTTAAAAAACAAATAGTTATAAATATTGGtttttt                       >  2:1656153/1‑128 (MQ=255)
                                                                                                            tttgTTTTTTTATTTATTTTTTAA‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtttt                         <  1:1449386/125‑1 (MQ=255)
                                                                                                            ttGGTTTTTTTATTTACTATT‑‑‑GA‑‑‑AAAAAAAAAAAAAAAAAAAATAATTTTAAAAAAATAAAAAATTTTTTTTAAAAAAATTAATAATTATTAAATTTAAAAAAACAAAATTTATAAAtaatttttttt                        >  1:599720/1‑118 (MQ=255)
                                                                                                               ttttttttATTTAATATTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAAATAATATAAATTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGt                     <  2:70173/127‑1 (MQ=255)
                                                                                                                ttttttttttAATTTTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGttt                   <  1:427110/128‑1 (MQ=255)
                                                                                                                 ttttttATTTACTATT‑‑‑GAAAAAAAAAAAAAAAAAAATAAAATAATTTGCAAAATATAAAAATTTTTTTTTAAAAAAATTTTTATTTATTAATTTTAAAAAACAAATAGTTATTAAAGTTGTTTTTTTg                      >  1:1965051/1‑128 (MQ=255)
                                                                                                                 ttttttATAAAATTTT‑‑‑A‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTta                  <  1:1079729/128‑1 (MQ=255)
                                                                                                                   ttttATTTACTATT‑‑‑GAAAAAAAAAAAAAAAAAATAATATAATTTGAATAATATAAAAAATTGTTTTTAAAATAATTATAAATTATTAAATTTAAAAAAACAATATTTATAAATAtttttttttttttt                   >  2:794913/1‑128 (MQ=255)
                                                                                                                   ttttATTTACAATT‑‑‑GA‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtat                 <  2:937716/128‑1 (MQ=255)
                                                                                                                    tttatttaCTATT‑‑‑GAA‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACAATAAAAAATTGTTTTACAAAAAATTATTAATAATTAAATTAAAAAAAACAAAATTTATAAATATTGGTTTTTTGTTtat                 >  1:1607133/1‑128 (MQ=255)
                                                                                                                       atttaCTATT‑‑‑G‑‑‑‑AAAAAATAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtattat            <  2:1237786/128‑1 (MQ=255)
                                                                                                                         ttaCTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAATAATATAATTTGCATAATATAAAAAATTTTTTTTAAAATAATTATTAATGAGTAAATTTAAAAAACAAAATGTTTAAAATATTGGTTTTTTTTTTAtatttttat         >  2:605729/1‑128 (MQ=255)
                                                                                                                          taCTATT‑‑‑GAA‑‑AAAAAAAAAAAAAAAAAAAATAATTTTCATAATATAAAAAATTTTTTTTAAAATAATTATTAAGGATTAAATTTAAAAAACCAAAAGTTATAAATATTGTTTTTTTTTTTAtattatt           >  1:1947307/1‑128 (MQ=255)
                                                                                                                           taatATT‑‑‑T‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtattattat         <  1:208466/125‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                     
CTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑‑G‑‑‑‑AAAAAAAAAAAAAAATAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTT  >  CP016816/34818‑35072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: