Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816176,3170GA66.9% 1024.5 / inf 878intergenic (+155/‑80)JCVSYN2_00720/JCVSYN2_00725FAD synthetase/30S ribosomal protein S15
Reads supporting (aligned to +/- strand):  ref base G (115/173);  new base A (237/346);  total (357/521)
Fisher's exact test for biased strand distribution p-value = 8.83e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.70e-01

Only 100 of 899 total aligned reads displayed.

ATTCTAAACTTTCTAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAGAACAAAAATTAGCATTAATTAAAGAGTTTGGTGGA  >  CP016816/176191‑176444
                                                                                                                              |                                                                                                                               
aTTCTAAACTTTCTAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTaga                                                                                                                                <  1:1276527/128‑1 (MQ=255)
 ttCTAAACTTTCTAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTaaag                                                                                                                               <  1:1930258/128‑1 (MQ=255)
   cTAAACTTTCTAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGtt                                                                                                                             <  1:416834/128‑1 (MQ=255)
   cTAAACTTTCTAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGtt                                                                                                                             <  1:1759980/128‑1 (MQ=255)
     aaaCTTTCTAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTtag                                                                                                                           <  2:256447/128‑1 (MQ=255)
      aaCTTTCTAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTtagt                                                                                                                          >  1:2689/1‑128 (MQ=255)
      aaCTTTCTAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTtagt                                                                                                                          >  2:1198035/1‑128 (MQ=255)
        cTTTCTAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTtagtat                                                                                                                        >  1:1445101/1‑127 (MQ=255)
        cTTTCTAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTtagtag                                                                                                                        >  2:1493846/1‑128 (MQ=255)
        cTTTCTAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTtagtag                                                                                                                        >  1:17264/1‑128 (MQ=255)
        cTTTCTAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTtagtag                                                                                                                        >  2:775434/1‑128 (MQ=255)
         tttATAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTagtagt                                                                                                                       <  2:439907/128‑1 (MQ=255)
           tCTAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGttt                                                                                                                     >  2:153511/1‑128 (MQ=255)
            cTAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTag                                                                                                                                 <  2:1819195/115‑1 (MQ=255)
             tAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTAc                                                                                                                   <  2:1979947/128‑1 (MQ=255)
                aaGTATTTTATATTAAACTATAATTTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACTAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCag                                                                                                                <  2:1104938/128‑1 (MQ=255)
                aaGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCag                                                                                                                <  2:1063785/128‑1 (MQ=255)
                   tATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTGCCAgaga                                                                                                             >  2:834552/1‑128 (MQ=255)
                   tATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAgaga                                                                                                             >  1:1893321/1‑128 (MQ=255)
                    aTTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGAc                                                                                                            >  1:1513395/1‑128 (MQ=255)
                    aTTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGAAAAATTAACTTATTTATGATAATATTTTAAAGTTAGTAGTTTACCATAGAc                                                                                                            >  1:1077594/1‑128 (MQ=255)
                        tatataAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACatta                                                                                                        <  1:1051443/128‑1 (MQ=255)
                          tataAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACattatt                                                                                                      >  2:526885/1‑128 (MQ=255)
                           ataAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTAttc                                                                                                     >  1:802602/1‑128 (MQ=255)
                            taAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTAttct                                                                                                    >  2:543342/1‑128 (MQ=255)
                             aaaaCTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTAttctt                                                                                                   >  2:1784278/1‑128 (MQ=255)
                              aaaCTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTAttcttt                                                                                                  >  2:214411/1‑128 (MQ=255)
                              aaaCTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTAttcttt                                                                                                  >  1:507514/1‑128 (MQ=255)
                              aaaCTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTAttcttt                                                                                                  >  2:49499/1‑128 (MQ=255)
                               aaCTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTAttctttc                                                                                                 <  1:54148/128‑1 (MQ=255)
                               aaCTAAAAATTATTAGATATTTTTAGAATTTTTAGCTTTTTTTAAAATTCATTTTAATTACTAAGACAAAGTCACTGATTTATGATAATATTTTAGCGTTAGTAGTTTACCAGAGACATTAtgctttc                                                                                                 <  2:275133/128‑1 (MQ=255)
                                   aaaaaTTATTTGATATTTTTACAATTTTTATCTTTTTTTATAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCaa                                                                                             <  2:186206/128‑1 (MQ=255)
                                   aaaaaTTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCaa                                                                                             >  2:1725193/1‑128 (MQ=255)
                                   aaaaaTTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCaa                                                                                             <  1:1864415/128‑1 (MQ=255)
                                   aaaaaTTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTAAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCaa                                                                                             >  2:582274/1‑128 (MQ=255)
                                      aaTTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAata                                                                                          <  2:939353/128‑1 (MQ=255)
                                      aaTTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAata                                                                                          <  2:893694/128‑1 (MQ=255)
                                      aaTTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAata                                                                                          <  1:729743/128‑1 (MQ=255)
                                        ttattTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATg                                                                                        <  1:383929/128‑1 (MQ=255)
                                          attTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGcc                                                                                      <  1:527883/128‑1 (MQ=255)
                                          attTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGcc                                                                                      <  1:893919/128‑1 (MQ=255)
                                          agttGTTATTATTAATATTTATATCTTTTTTTAAAATACATATTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGcc                                                                                      <  1:1807859/126‑1 (MQ=255)
                                           tttGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGACt                                                                                     >  1:233448/1‑128 (MQ=255)
                                           tttGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTTTTTCTCAAATATGCCt                                                                                     <  2:698455/128‑1 (MQ=255)
                                             tGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCttt                                                                                   <  2:1239418/128‑1 (MQ=255)
                                             tGATATTTTTACAATTTTTATATTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCttt                                                                                   <  1:1158079/128‑1 (MQ=255)
                                               atatTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGa                                                                                 <  1:828824/128‑1 (MQ=255)
                                               atatTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGa                                                                                 <  2:1337690/128‑1 (MQ=255)
                                                 atTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATa                                                                               >  1:1663950/1‑128 (MQ=255)
                                                 atTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATa                                                                               <  2:732433/128‑1 (MQ=255)
                                                 atTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATa                                                                               <  1:568371/128‑1 (MQ=255)
                                                  tttttACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCATATATGACTTTGATAg                                                                              >  1:1338577/1‑128 (MQ=255)
                                                  tttttACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAg                                                                              <  2:1567693/128‑1 (MQ=255)
                                                  tttttACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAg                                                                              <  2:1694821/128‑1 (MQ=255)
                                                  tttttACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAg                                                                              <  2:1650003/128‑1 (MQ=255)
                                                   ttttACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGa                                                                             <  1:302260/128‑1 (MQ=255)
                                                       aCAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACAtt                                                                         <  1:349497/128‑1 (MQ=255)
                                                       aCAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACAtt                                                                         <  1:1475043/128‑1 (MQ=255)
                                                        cAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACAttt                                                                        >  1:1591399/1‑128 (MQ=255)
                                                         aaTTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTa                                                                       <  2:852910/128‑1 (MQ=255)
                                                         aaTTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTa                                                                       >  2:326862/1‑128 (MQ=255)
                                                          aTTTTTTTCTTTTTTTAAAATACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTaa                                                                      <  1:1117774/128‑1 (MQ=255)
                                                          aTTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTaa                                                                      <  2:1403351/128‑1 (MQ=255)
                                                                aTCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAAtacta                                                                >  1:1407654/1‑128 (MQ=255)
                                                                aTCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAAtacta                                                                >  1:60068/1‑128 (MQ=255)
                                                                   tttttttAAAAAACATTTTAATAACTAAGAAAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTacac                                                             <  2:667137/128‑1 (MQ=255)
                                                                    ttttttAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTAcaca                                                            <  2:1282637/128‑1 (MQ=255)
                                                                        ttAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGga                                                        <  1:1004041/128‑1 (MQ=255)
                                                                        ttAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGga                                                        >  1:1638679/1‑128 (MQ=255)
                                                                         tAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGgag                                                       <  1:1546121/128‑1 (MQ=255)
                                                                           aaaaaCATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGaa                                                     <  2:194522/128‑1 (MQ=255)
                                                                            caaaCATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGAAGTTAACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGaaa                                                    <  1:972889/127‑1 (MQ=255)
                                                                            aatgttttttAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGaaa                                                    >  2:1443006/7‑128 (MQ=255)
                                                                             aaaCATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGaaaa                                                   <  2:1616738/128‑1 (MQ=255)
                                                                               aCATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGaaaaaa                                                 <  2:1507319/128‑1 (MQ=255)
                                                                                 aTTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATg                                               <  2:557906/128‑1 (MQ=255)
                                                                                  ttttAATAACTAAGACAAAGTAACTGATTTATGATAAGATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTTAATACTACACAAGGAGAAAAAATgg                                              >  2:1755954/1‑128 (MQ=255)
                                                                                  atttAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTATTTCTAAAATATGCCTTTGATAGACATATAAATACTACACAAGGAGAAAAAATgg                                              >  1:768668/2‑128 (MQ=255)
                                                                                      aataaCTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTc                                          <  1:209568/128‑1 (MQ=255)
                                                                                        taaCTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGa                                        <  1:449720/128‑1 (MQ=255)
                                                                                         aaCTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGaa                                       <  2:398257/128‑1 (MQ=255)
                                                                                         aaCTAAGACAAAGTAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGaa                                       <  2:611210/128‑1 (MQ=255)
                                                                                          aCTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACTAGGAGAAAAAATGGTTTCGaaa                                      >  2:1884338/1‑128 (MQ=255)
                                                                                           cTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCACAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAg                                     >  1:868504/1‑128 (MQ=255)
                                                                                                   aaGTAACTGATTTATGATAATAATTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAGAACaaaaa                             <  2:1146271/128‑1 (MQ=255)
                                                                                                      tAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTaca                                                              <  1:1961798/92‑1 (MQ=255)
                                                                                                      tAACTGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAGAACAAAAATTa                          >  1:1317462/1‑128 (MQ=255)
                                                                                                          tGATTTATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAGAACAAAAATTAGCat                      >  1:473786/1‑128 (MQ=255)
                                                                                                            aTTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAGAACAAAAATTAGCatta                    >  1:1212968/1‑128 (MQ=255)
                                                                                                             tttATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAGAACAAAAATTAGCattaa                   <  2:158553/128‑1 (MQ=255)
                                                                                                             tttATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATAAGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAGAACAAAAATTAGCattaa                   <  2:802602/128‑1 (MQ=255)
                                                                                                              ttATGATAATATTTTTGAGTTAGTAGTTTACCAGAGACATTAATCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAGAACAAAAATTAGCattaat                  <  1:653746/128‑1 (MQ=255)
                                                                                                              ttATGATAATATTTTATAGTTAGTAGTTTACCAGAGAAATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAGAACAAAAATTAGCattaat                  <  1:161603/128‑1 (MQ=255)
                                                                                                              ttATGATAATATTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAGAACAAAAATTAGCattaat                  <  1:931143/128‑1 (MQ=255)
                                                                                                                aTGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAGAACAAAAAATATCaataatta                >  1:996702/1‑128 (MQ=255)
                                                                                                                     aataTTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAACAAATGGTTTCGAAAGAACAAAACTTACCATTAATTAAagag           >  1:1242602/1‑128 (MQ=255)
                                                                                                                      atatTTTAAAGTTAGTAGTTTCCCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAGAACAAAAATTAGCATTAATTAAAGAGt          <  2:977440/128‑1 (MQ=255)
                                                                                                                        atTTTAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAGAACAAAAATTAGCATTAATTAAAGAGttt        >  1:1825735/1‑128 (MQ=255)
                                                                                                                          tttAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAGAACAAAAATTAGCATTAATTAAAGAGTTtgg      >  2:363916/1‑128 (MQ=255)
                                                                                                                           ttAAAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAGAACAAAAATTAGCATTAATTAAAGAGTTtggt     <  1:1709349/128‑1 (MQ=255)
                                                                                                                              |                                                                                                                               
ATTCTAAACTTTCTAAAAGTATTTTATATAAAACTAAAAATTATTTGATATTTTTACAATTTTTATCTTTTTTTAAAAAACATTTTAATAACTAAGACAAAGTAACTGATTTATGATAATATTTTAGAGTTAGTAGTTTACCAGAGACATTATTCTTTCTCAAATATGCCTTTGATAGACATTTAAATACTACACAAGGAGAAAAAATGGTTTCGAAAGAACAAAAATTAGCATTAATTAAAGAGTTTGGTGGA  >  CP016816/176191‑176444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑