BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	202,496	0	A	.	46.5%	76.0 / 136.6	109	intergenic (+274/‑401)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand): ref base A (14/32); new base . (0/40); total (17/92)
Fisher's exact test for biased strand distribution p-value = 5.80e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 191 total aligned reads displayed.

TAATAGAGTTAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑‑AAAT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCTA  >  CP016816/202371‑202622

   taGAGTTAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCAAC‑‑TTAAA‑‑AATT‑aaaaaaaa                                                                                                                          >  2:1680811/1‑128 (MQ=255)

    atagTTAAGGTTAATTAAAATACCAAAAAA‑TTAATAAATCTTAAAATGTATAACCTCGTGATC‑TATTTTTTTAATTGTTT‑ATCT‑TCAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑a                                                                                                                        <  2:1371676/126‑1 (MQ=255)

     tagTTAAGGTTAATTAAAATAACATAAAA‑TTAATAATTCTTAAAATGTCTATCCTCGTGTTT‑TTTTTTTTTTTTTTTTT‑ATCT‑TCAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aa                                                                                                                       <  1:1504287/127‑1 (MQ=255)

        ttAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAATAAAAAAAAAAACAAACAAC‑‑TTAAA‑‑AAAT‑aaaaaaaa‑aaaa                                                                                                                     >  2:172456/1‑128 (MQ=255)

        ttAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCC‑‑ATAAA‑‑AAAT‑aaaaaaaa‑aaaaa                                                                                                                    >  1:1262028/1‑128 (MQ=255)

        ttAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑ACACAAAT‑‑AAAAAAAAACAATCCAC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaa                                                                                                                   >  1:386644/1‑128 (MQ=255)

         taattttaattaaAAAAACAAAAAA‑TTAAAAAATATAAAAAATTATATACTAGTTATT‑TATTTTTTTATTTTTTT‑ATAT‑TAACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaa                                                                                                                   <  2:1157315/123‑1 (MQ=255)

         tAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaa                                                                                                                   >  2:234450/1‑128 (MQ=255)

         tAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑‑AAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaa                                                                                                                  >  2:1586800/1‑128 (MQ=255)

          aatgTTAATTAAAATACAATAAAT‑TTAATAATTCTTATAATGTATATCCTCGTTTTT‑TATTTTTTTATTTTTTT‑ATAT‑TAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaa                                                                                                                  <  1:1685004/125‑1 (MQ=255)

          aaGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTATATCATCGTGATC‑TATTTTTTTATTAATTT‑ATCT‑TCACAAAT‑AAAAAAAAAAAAAAAAAC‑‑‑TAAA‑‑AAAT‑taaaaaaa‑aaaaaaaa                                                                                                                 >  1:1378/1‑128 (MQ=255)

          aaGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATTATTTTATTAGTTT‑ATAT‑TAACAAAT‑AAAAAAAAAACAAACAAATAaaaaa‑‑aaaa‑aaaaaaaa‑aaaaa                                                                                                                    >  1:564032/1‑128 (MQ=255)

          aaGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCTTGATC‑TATATATTTATTTGTTA‑ATCT‑TCACAAAT‑AAAAAAAAAACAAACCCC‑‑‑AAAA‑‑AAAT‑aaaaaaaa‑aaaaaaaa                                                                                                                 >  2:1491770/1‑128 (MQ=255)

          aaGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑aaaaaaaa‑aaaaaaaa                                                                                                                 >  2:1520025/1‑128 (MQ=255)

          aaGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAAAACCAAT‑‑‑AA‑‑AAAT‑aaaaaaaa‑aaaaaaaa                                                                                                                 >  1:430000/1‑128 (MQ=255)

          aaGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAAAAAATCAC‑‑CTAAA‑‑AAAT‑taaaaaaa‑aaaaaaa                                                                                                                  >  1:703673/1‑128 (MQ=255)

           aGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCC‑‑‑ATAAA‑‑AAAT‑taaaaaaa‑aaaaaaaaa                                                                                                                >  1:232710/1‑128 (MQ=255)

           aGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑AA‑‑AAAT‑aaaaaaaa‑aaaaaaaaa                                                                                                                >  1:986532/1‑128 (MQ=255)

           aGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATAT‑TAAAAAAT‑AAAAAAAAAACAA‑‑ACAAATTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaa                                                                                                                 >  1:1372762/1‑128 (MQ=255)

           aGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATACTCTTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCAAAAAT‑AAAAAAAAAAAAAT‑‑AAAATTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaa                                                                                                                 >  1:1156134/1‑128 (MQ=255)

            ggTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaa                                                                                                                >  1:1659166/1‑128 (MQ=255)

            ggTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCC‑‑‑TAAA‑‑AAAT‑aaaaaaaa‑aaaaaaaaaa                                                                                                               >  1:840035/1‑128 (MQ=255)

            atttaattaaAATAACAAATAA‑TTTATAATTAATATAATTTAAATACTCGTTTTA‑TATTTTTTTTTTTTTTT‑ATAT‑TAACAAAA‑AAAAAAAAAACAAACCCC‑‑ATAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaa                                                                                                                <  2:364313/126‑1 (MQ=255)

             ttactataaAATACCAAAAAA‑TTTATAAATGTTATTATCTCTCTCCCCG‑GTTCTTATTTTTTTTATTTTTT‑TTCT‑TAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaa                                                                                                               <  1:1011096/122‑1 (MQ=255)

              ttaattaaAATAACATAAACATTATTATTTATTTTATTTTTGAT‑ATCTTGTTT‑TATTTTTTTATTTGTTT‑TTTT‑TTAAAAAA‑AAAAAAAAAACAAACCCCTTATAAA‑‑TTAa‑aaaaaaaa‑aaaaaaaaa                                                                                                                <  2:1640717/128‑1 (MQ=255)

               taattaaAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAAACACCTT‑‑‑AA‑‑AAAT‑aaaaaaaa‑aaaaaaaaaaaaa                                                                                                            >  1:610438/1‑128 (MQ=255)

               taattaaAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAAAAATCAC‑‑ATTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaa                                                                                                             >  2:1561882/1‑128 (MQ=255)

               taattaaAATACCAAAAAC‑TTAATAATTATTATAATGTAGATCCTCTTGATC‑TATTTTATTATATTATT‑ATCT‑TAAAAAAT‑AAAAAAAAAAAAATAAAC‑‑TTAAA‑‑AAAT‑aaaaaaaa‑aaaaaaaaaaaa                                                                                                             >  2:438691/1‑128 (MQ=255)

               taaataaaATAACATAAAA‑TTTAAAATTTTTATAATGGTCTTCCTCCTGTTG‑ATTTTTTTTTTTTTTTT‑ATCT‑TAACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAA‑‑AAAT‑aaaaaaaa‑aaaaaaaaaaaa                                                                                                             <  1:204829/128‑1 (MQ=255)

                aattaaAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCCTTAAAAA‑‑Taaa‑aaaaaaaa‑aaaaaaaaaaa                                                                                                              >  1:225618/1‑128 (MQ=255)

                aattaaAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaa                                                                                                            >  1:1480540/1‑128 (MQ=255)

                aattaaAATACCATAAAC‑TTAATAATTATTATAAAGTAGATCCTCGTGATC‑TATTTTTTTATATTTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATACAC‑‑TAAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaa                                                                                                            >  1:929606/1‑128 (MQ=255)

                 attaaAATACCATAAAC‑TTAATAATTCTTATAATGTATATCCTCTTGATC‑TATTATTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAAACCC‑‑ATTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaaa                                                                                                           >  2:1179874/1‑127 (MQ=255)

                 attaaAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAAT‑‑AAAATTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaaa                                                                                                           >  2:5102/1‑127 (MQ=255)

                  ttaaAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAATAAAAACAATCCCCTTAAAAA‑‑TTAT‑aaaaaaaa‑aaaaaaaaaaata                                                                                                            >  1:1831909/1‑126 (MQ=255)

                   taaAATACCATAAAA‑ATAATAATTATTATAATTTATATACTCGTTATC‑TATTTTTTTATTTTTTT‑ATAT‑TCAAAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaactaaaa                                                                                                         <  2:1837542/128‑7 (MQ=255)

                    aaaaaaACATAAAA‑ATTATAATTATTATAATTTATATACTTTTGTTA‑TATTTTTTTATTTTTTT‑ATCT‑TAACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTaa                                                                                                        <  2:1797177/128‑1 (MQ=255)

                    aaaaTACAAAAAAC‑TTATAATTTATTATTAAGAATATCCTCTTGATA‑TATTTTTTTATTTGTTT‑ATAA‑TCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaactaaaaac                                                                                                        <  2:631363/128‑9 (MQ=255)

                     aattACCATAAAA‑TATATAATTATTATAATGTATATCATCTTTATT‑TATTTTTTTATTTTTTA‑TTTT‑TAAAAAATAAAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTaa                                                                                                        <  2:1624467/125‑1 (MQ=255)

                     aaaTACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAAAAAT‑‑CCAAATAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                                       >  2:219543/1‑123 (MQ=255)

                     aaaTACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAAAAAACCAC‑‑TTAAA‑‑AATT‑aaaaaaaa‑aaaaaaaaaaaaaaaaaa                                                                                                       >  1:1522230/1‑123 (MQ=255)

                      aaaaCCAAAAAA‑TTAAAAATATATAAAATTTATATCCTCCGTCTC‑TATTTTTTTTTTTTTTT‑TTAT‑TTACAAAA‑AAAAAAAAAAAAATTCCCCTT‑‑AA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTaaaa                                                                                                      <  2:1198401/125‑1 (MQ=255)

                      aaTACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑Aaaaaaaa‑aaaaaaaaaaaaaaaaaaa                                                                                                      >  2:1667920/1‑128 (MQ=255)

                          caaTAAAA‑TTAATAAATATTAAAATTTATATAAAAGTTATC‑TATTTTTTTTTTTTTTT‑AAAT‑TAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAaaacaa                                                                                                  <  2:1647290/126‑1 (MQ=255)

                           aaaaaaa‑TTAATAATTATTAAAATTTATATACTCTTTATC‑AATTTTTTTATTTTTTT‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AAAT‑‑AAAAAAA‑AAAAAAAAAAAAACTAAaaacaaac                                                                                                <  2:1674427/125‑1 (MQ=255)

                             tAAAC‑ATTATAAATTTTTTAATTTTCATACTCGGTATC‑TATTTTTTTATTTTTTT‑ATCT‑TCAAAAAT‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑‑AAAT‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                            <  1:1564429/128‑1 (MQ=255)

                             tAAAA‑TTAATAATTCTTATAATTTTTATAAAAGTTATA‑TTTTTTTTTTTTTTTTT‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAAT‑‑TTAAAAA‑AAAAAAAAAAAAACTAAAAACAAActct                                                                                             <  2:232710/128‑1 (MQ=255)

                               aaaatataaaatTATTATAATTTATATCCACGTGTTA‑TATTTTTTTTTTTTTTT‑ATAT‑T‑AAAAAA‑AAAAAAAAAAAAAACCCCAT‑‑‑AA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                            <  1:1739898/119‑1 (MQ=255)

                                aC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAA‑AAAaaacaaacacaat                                                                                           >  1:1768285/1‑123 (MQ=255)

                                 aattAATAAATCTTATAATTTATAACCTAGTTATT‑TATTTTTTTATTTTTTT‑ATTT‑TAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                            <  2:1597478/126‑1 (MQ=255)

                                   ttAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAA‑AAAAAACAAACTATAtta                                                                                         >  2:205763/1‑127 (MQ=255)

                                    taataaTTTTTAAAATTAATATACTCTTTATA‑TATTTTTTTTTTTTTTT‑ATAT‑TAAAAAAT‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                        <  2:518838/128‑1 (MQ=255)

                                       aaatTCTTATAATTTATATACTTTTTATA‑TTTTTTTTTATTTGTTT‑ATCT‑TAACAAAT‑AAAAAAAAAA‑AATCCCCTT‑‑‑AA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                                    <  2:1016880/127‑1 (MQ=255)

                                             ttATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑‑AAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAATAA‑AAAAAAAAAAAAA‑‑AAAAACAAAAACTATTTCTAAAAATTacc                                                                             >  1:1839321/1‑128 (MQ=255)

                                                        aatatCGTTATT‑TAATTTTTTAATTTTTT‑ATCT‑AAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑‑AAAT‑‑‑‑AAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                                  <  1:246874/124‑1 (MQ=255)

                                                         aaaatttttttatatttttttattttttT‑ATAT‑TAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                   <  2:707827/116‑1 (MQ=255)

                                                             cGTTATA‑TATTTTTTT‑TTTTTTT‑ATTTATAACAAAA‑AAAAAAAAAAAAATACCC‑‑ATAAA‑‑AAAT‑‑AAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                               <  2:439344/128‑1 (MQ=255)

                                                              ttttatttatttttttattttttT‑ATAT‑TAAAAAAT‑AAAAAAAAAAAAATCCCATT‑‑‑AA‑‑AAAT‑‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                              <  2:1357327/121‑1 (MQ=255)

                                                               tttaattatttttttattttttT‑ATAT‑TAACAAAA‑AAAAAAAAAACAATCACCTT‑‑‑AA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                              <  2:1455786/122‑1 (MQ=255)

                                                               ttatttatttttttttttttttt‑tTAT‑TAAAAAAT‑AAAAAAAAAA‑AATACCCATT‑‑AA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                              <  2:956414/120‑1 (MQ=255)

                                                                ttttatATTTTTTTTTTTTTTT‑ATAT‑TTAAAAAT‑AAAAAAAAAAAAAAACACTT‑‑‑AA‑‑AAAT‑‑AAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                            <  2:1503473/123‑1 (MQ=255)

                                                                tttatatattttttATTTTTTTAATAT‑TAAAAAAA‑AAAAAAAAAAAAATAACC‑‑‑TAAA‑‑AAA‑‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                             <  2:1220735/120‑1 (MQ=255)

                                                                taattattttttttATTT‑TTT‑AAAT‑AAAAAAAA‑AAAAAAAAAAAAAACCC‑‑‑ATAAA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                            <  2:1884591/121‑1 (MQ=255)

                                                                gtttttatttttttattttttA‑ATTT‑TAACAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                              <  2:1093760/123‑1 (MQ=255)

                                                                attaatatttttttattttttT‑TTAT‑TAAAAAAA‑AAAAAAAAAAAAAACCAC‑‑ATAAA‑‑AAAT‑‑‑AAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                            <  2:919537/123‑1 (MQ=255)

                                                                   tttttttttttattttttt‑aTTA‑ACAAAAAT‑AAAAAAAAAAAAAACCC‑‑‑ATAAA‑‑AAAT‑‑‑‑‑TAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                      <  2:1052230/124‑1 (MQ=255)

                                                                   c‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAATAA‑‑AAAAAAAAA‑‑ATATTTATTAAAATTACATATTAAAACACATTTTATTTTTa                                                      >  2:1526049/1‑128 (MQ=255)

                                                                    tttttttttttttttttT‑AACT‑TAAAAAAA‑AAAAAAAAAAAAATACCC‑TTAAAA‑‑ATTA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttat                                                           <  2:1328869/125‑1 (MQ=255)

                                                                    atATTTTTTTATTTGTTT‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                                          <  2:1659166/127‑1 (MQ=255)

                                                                     tttttttttattttttt‑aAAT‑TCAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AAAT‑‑‑AAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                       <  1:1843420/126‑1 (MQ=255)

                                                                     ttattttttATTTTTTT‑TTAT‑TAAAATAT‑AAAAAAAAAAAAATACCCTTT‑‑‑A‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                        <  1:1507565/125‑1 (MQ=255)

                                                                     tATTTTTTTTTTTTTTT‑ATTT‑TAAAAAAT‑AAAAAAAAAAAAAAACCCTT‑‑‑AA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                        <  2:260855/128‑1 (MQ=255)

                                                                      tttttttttttttttT‑ATTT‑TAAAAAAA‑AAAAAAAAAAAAAACCCCATAAAAATTAAAA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                            <  1:1179874/127‑1 (MQ=255)

                                                                      atttttttattttttt‑ATAT‑TAAAAAAA‑AAAAAAAAAAAAATACCATT‑‑‑AA‑‑AAAT‑‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                      <  1:321496/128‑1 (MQ=255)

                                                                       tttttttattttttt‑aTAT‑TAAAAAAA‑AAAAAAAAAAAAAACCAC‑ATAAAA‑‑ATTA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                        <  1:434935/128‑1 (MQ=255)

                                                                        ttttttattttttt‑atAA‑TAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                      <  2:1885193/128‑1 (MQ=255)

                                                                        ttttttATT‑‑TTT‑ATTA‑TTACAAAA‑AAAAATAAAAAAAAACCC‑TTTAAA‑‑ATAT‑AAAAAAAATAAAAAAAAAAAAACTAAATACAAACTCTATTTCTTAAAATTCCCTATTATACAACATTTTATTTTTa                                                      <  2:1299179/128‑1 (MQ=255)

                                                                          tttttttttttt‑ATAT‑TAACAAAT‑AAAAAAAAAAAAATTCACTT‑‑‑AA‑‑AAAT‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                                 <  1:1610217/128‑1 (MQ=255)

                                                                          ttttATTTTTTT‑ATCT‑TAAAAAAA‑AAAAAAAAAACAATCCACTT‑‑‑AA‑‑AAAT‑‑‑AAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                                 <  2:1782623/128‑1 (MQ=255)

                                                                          ttttATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAA‑‑AAAAACAAAATATATTAAATAAAATTCAATATAAAAAAAAATTTTATTTTTAAAAt                                                  >  2:1280637/1‑128 (MQ=255)

                                                                           tttATTTTGTT‑TTAT‑TCAAAAAT‑AAAAAAAAAAAAAT‑‑ACATTT‑AA‑‑AATT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                                  <  1:1705168/128‑1 (MQ=255)

                                                                           tttATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAACCAATCCCC‑‑‑TAAA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAA‑‑TAAAAAAAAAAACAATTTCATAAAAATCACAATAAAACCCCAATTAATTTTTAAAATaa                                                >  2:415279/1‑128 (MQ=255)

                                                                             ttttttttT‑ATCT‑TAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑‑AAAT‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                              <  2:1403072/126‑1 (MQ=255)

                                                                             tATTTTTTT‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAAAACCCTT‑‑‑AA‑‑AAAT‑‑TAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                               <  2:1834357/128‑1 (MQ=255)

                                                                              tttttttT‑ATTT‑TAAAAAAT‑AAAAAAAAAAAAATTCAATT‑‑‑AA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAATCCCTATTATACCACATTTTATTTTTAAAATAAg                                               <  1:1667920/127‑1 (MQ=255)

                                                                              aTTTTTTT‑ATAT‑TAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑‑AAAT‑AAAAAAAA‑AAAAAAAAAAACACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                                <  2:1699675/128‑1 (MQ=255)

                                                                                    ttttttaaaaaaaaaa‑aaaaaaaaaaaaATCCC‑‑‑TT‑AA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                          <  1:1022345/116‑1 (MQ=255)

                                                                                         ttataaaaaaT‑AAAAAAAAAAAAAAACCC‑‑ATAAA‑‑AAAT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTATATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                                       <  2:1763014/121‑1 (MQ=255)

                                                                                            ttaaaaaa‑aaaaaaaaaaaaaaACCCCTTAAAA‑‑AATA‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                      <  1:1589698/124‑1 (MQ=255)

                                                                                             aaaaaaT‑AAAAAAAAAAAAAAAACCA‑‑TAAA‑‑AATTAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                                    <  2:1950753/125‑1 (MQ=255)

                                                                                               aaaaT‑AAAAAAAAAACAATCCCCAT‑‑‑AA‑‑AAAT‑‑‑TAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat                              <  2:1806078/127‑1 (MQ=255)

                                                                                                   aaaaaaaaaaaaCAATACCCTT‑‑‑AA‑‑AAAT‑TAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                             <  2:1932995/126‑1 (MQ=255)

                                                                                                               cAATCCCC‑‑TTAAA‑‑AATT‑AAAAAAAA‑AAAAAAAAAAAAA‑‑AAAAACAAACACAATTTATTAAAATTCACTATTATACCAAATTTTTTTTTTAAAAAAAGATATTTAAATAAAATATAAATAAtatatata                >  1:1915794/1‑128 (MQ=255)

                                                                                                                  aaaaacaataaa‑‑aaat‑taaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                 <  1:1561882/120‑1 (MQ=255)

                                                                                                                  aaaaaaccctta‑‑aaaa‑aaaaaaaa‑aaaaaaaaaaaaaCTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                 <  2:616471/117‑1 (MQ=255)

                                                                                                                     taaacttaa‑‑aaat‑taaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataat              <  2:690365/121‑1 (MQ=255)

                                                                                                                     aactttAAA‑‑AATTAAAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa               <  2:830069/125‑1 (MQ=255)

                                                                                                                       ctttaaa‑‑attt‑aaaaAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc            <  2:1516303/127‑1 (MQ=255)

                                                                                                                                 att‑aaaaaaAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGc    <  2:1878848/126‑1 (MQ=255)

                                                                                                                                  ttaaaaaaaaa‑aaaaaaaaaaaaaCTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGc    <  2:683993/125‑1 (MQ=255)

TAATAGAGTTAAGGTTAATTAAAATACCATAAAC‑TTAATAATTCTTATAATGTAGATCCTCGTGATC‑TATTTTTTTATTTGTTT‑ATCT‑TCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑‑AAAT‑AAAAAAAA‑AAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCTA  >  CP016816/202371‑202622

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`