New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 203895316 (0.120)483 (0.160)
+TTT
124/212 29.9 57.9% intergenic (+279/+179) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
?CP016816 203896 = 358 (0.110)intergenic (+280/+178) JCVSYN2_00845/JCVSYN2_00850 lipoprotein/inorganic diphosphatase
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 769 total aligned reads displayed.

TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTA  >  CP016816/203768‑204016
                                                                                                                                            |                                                                                                                                                
tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑T‑‑‑C‑‑‑TTg                                                                                                                                                  >  1:559579/1‑128 (MQ=255)
tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGATTTCAAAGTGTATTTTTTAT‑‑‑G‑‑‑C‑‑‑TTg                                                                                                                                                  >  1:4715644/1‑128 (MQ=255)
tatAAATTTTTTTAAAAAAAAAATATATAATTTTTTATTTATAGCCATTTTTAAAAAAGCTTATGTTCTATGCTTTTTATTATTCTTATCAACATTAAAACGCTTTCAAATTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTg                                                                                                                                                  <  1:1548758/126‑1 (MQ=255)
   aaTTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑ttt                                                                                                                                          >  1:5722002/1‑128 (MQ=255)
   aaTTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTAATATACTTATCAAAATTTCAACTCTTACAAATTGTAAATTTTAG‑‑‑G‑‑‑C‑‑‑ttt‑‑‑‑‑ttt                                                                                                                                          >  2:6037624/1‑128 (MQ=255)
    aTTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATCCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TGG‑‑‑‑‑tttt                                                                                                                                         >  1:5100723/1‑128 (MQ=255)
     ttttttttAATAAAAAAAATAAAAATTTTTAATTTAAACCCATTTTTAAAAAACCCTATGTTCTAGGCTTTTTATTATAATTATCAAAATAACAACGCTTTCAAATTTTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑ttttt                                                                                                                                        <  1:1924722/128‑1 (MQ=255)
      tttttttATAAAAAAAATTAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑ttttttt                                                                                                                                      >  1:5292861/1‑128 (MQ=255)
       ttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑ttttttt                                                                                                                                      >  1:6615118/1‑128 (MQ=255)
       ttttttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑ttttttt                                                                                                                                      >  1:792490/1‑128 (MQ=255)
          tttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt                                                                                                                                 >  1:6377976/1‑128 (MQ=255)
          tttATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt                                                                                                                                 >  2:5646343/1‑128 (MQ=255)
            ataaaaaaaaaaTAAATATTTTTAAATTAATTCCATTTGTAAAAAACCCTTTGTTTTAGGCTTTTTATTATAATTATAAAAATTACAACGCTTTCAAAGTTTTTTTTTTAG‑‑‑G‑‑‑G‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt‑‑‑tt                                                                                                                            <  2:1379761/125‑1 (MQ=255)
             ataAAAAAAAATAAAAATATTTTAATTAAATACATTTTTTAAAATGACTTTTTTTTATTTTTTTTTTTATAATTATTAAAATTATAACTCTTTTAAATTTTTTTTTTTAG‑‑‑G‑‑‑T‑‑‑ttt‑‑‑‑‑tttttttt‑‑tt‑‑‑ttt                                                                                                                           <  2:2195291/128‑1 (MQ=255)
              taAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGGTCTATGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑ttattttt‑‑tt‑‑‑tttt                                                                                                                          >  1:5429233/1‑128 (MQ=255)
                aaaaaaaaTAAAAATTTTTAATTTTAATCCATTTTTAAAAAACCTATTTTTCTAGGTTTTTTATTAAATTTATAAAAATTAAAACCTTTTAAAATTTTTTTTTTTTT‑‑‑G‑‑‑C‑‑‑Ttt‑‑‑‑‑tttttttt‑‑tt‑‑‑tttttt                                                                                                                        <  2:3738339/128‑1 (MQ=255)
                  tataaatataaatTTTTAAATTATATTAATTTTTAAAAATTCATATTTTTTTTTTTTTTTTTTATTATTATAAAAAATACAACCGTTTCAAATTTTATTTTTTTT‑‑‑G‑‑‑T‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt‑‑‑tttttttt                                                                                                                      <  2:5924799/125‑3 (MQ=255)
                  aaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt‑‑‑tttttttt                                                                                                                      >  1:6748977/1‑126 (MQ=255)
                     aaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt‑‑‑ttttttttttt                                                                                                                   >  1:2084273/1‑123 (MQ=255)
                     aaaaaaaaatTTTTAATTTAAATCCATTTGTAAAAAATACTATTTTTTTGGGTTTTTATTTAAATTTTTAAAATTAAAACGTTTTCAATTTTTTTTTTTTTG‑‑‑G‑‑‑C‑‑‑Ttt‑‑‑‑‑tttttttt‑‑tt‑‑‑tttttttttgt                                                                                                                   <  2:6497781/128‑6 (MQ=255)
                       ataaaaatTTTTCATTTAACGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTATTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTGTT‑‑‑TT‑‑‑‑attaa                                                                                                          >  1:3490767/1‑124 (MQ=255)
                       ataaaaatTTTTCATTTAAAGCCATTTGTAAAAACGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑A‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt‑‑‑tttttttttttta                                                                                                                 >  2:3610787/1‑121 (MQ=255)
                       ataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTTTATTTTTTAG‑‑‑G‑‑‑A‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑taaaa                                                                                                          >  1:4032064/1‑128 (MQ=255)
                            aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt‑‑‑tttttttttttaaaaaa                                                                                                             >  2:722041/1‑117 (MQ=255)
                            aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt‑‑‑ttttttttttgtaaaaa                                                                                                             >  1:492628/1‑117 (MQ=255)
                             aatTTTTTATTTAAATCAATTTAAAAAAATCTTATTTTAAATTCTTTTTTTTAAAAATATTAAAATTAACACGCTTTAAAAGTGTTTTTTTTTGG‑‑‑G‑‑‑T‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt‑‑‑ttttttttttgtaaaaat                                                                                                            <  2:5825745/128‑13 (MQ=255)
                               attttTATTTAAATCCATTTTTAAAAAATCCTATTTTCTATGTTTTTTTTTATAATTATAAACATTAAAAAGCTTTTAAATTTTATTTTTTAT‑‑‑T‑‑‑CTTTTTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATaaa                                                                                                      <  2:628853/127‑1 (MQ=255)
                                ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATaaaa                                                                                                     >  1:5350175/1‑128 (MQ=255)
                                ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TAG‑‑‑‑‑TTTTTTTTTATT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATaaaat                                                                                                    >  1:3182117/1‑127 (MQ=255)
                                  ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑ATAAATAAAAGt                                                                                                   >  1:3687011/1‑128 (MQ=255)
                                    aaTTTTAATCCTTTTTTAAAAAATCCTATTTTTTATGTTTTTTTTTTTAAATATAAACATTACAACGCTTTCAAATTTTTTTTTTTTT‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTaa                                                                                                 <  2:6832491/127‑1 (MQ=255)
                                     aTTTAAATAAATTTGTAAAAATTTCTATTTTCTATGCTTTTTATTATAATTTTCAACTTTAAAAAGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGAtt                                                                                            <  1:3835138/128‑1 (MQ=255)
                                     aTTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAATTAAAAGTAAGAtt                                                                                            >  2:3939265/1‑128 (MQ=255)
                                      tttAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAATTAATATTTg                                                                                          >  2:5141557/1‑128 (MQ=255)
                                       ttAAACCCAATTTTAAAAAATCATATTTTCTATGCATTTTATTAAAATTATAAAAATTAAAACGCTTTAAAATTGTTTTTTTTTG‑‑‑G‑‑‑G‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGAtt                                                                                            <  2:5722002/128‑1 (MQ=255)
                                        tAAATCCATTTTTAAAAAAGCCTATGTTCTTGGCTTTTTATTATACTTATAAAAATTACAACCCTTTCAAATTGTATTTTTTTG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGAtt                                                                                            <  1:5883310/128‑1 (MQ=255)
                                         aatcccAATTTTAAAAATGCATTTTTTATAGGTTTTTTTTTTAAATTAAGAAAATTACAACGCTTTAAAATTGTTTTTTTTAT‑‑‑G‑‑‑G‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGATTTg                                                                                          <  2:6748977/124‑1 (MQ=255)
                                         aaatcaaTTTGTTAAAAAGCATATTTTTTTTGATTTTTTTTAAAATTATAAAAAATAAAAACCTTTAAAATTGTTTTTTTTAGTTTT‑‑‑T‑‑‑TTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGAttt                                                                                           <  2:6188484/122‑1 (MQ=255)
                                          aatccATTTGTAAAAAATCCTATTTTTTAGGCTTTTTATTATAATTATCAACATTAAAACGCTTTAAAATTGTTTTTTTTTG‑‑‑G‑‑‑C‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGATTTgg                                                                                         <  2:5519240/125‑1 (MQ=255)
                                          aatcaaTTTTTAAAAAATTCTATTTTTTTTGTTTTTTATTATTATTATTAAAATTTAAAAGCTTTAAAATTGTTTTTTTTTTG‑‑‑G‑‑‑T‑‑‑TTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGATTTGGa                                                                                        <  2:1921440/123‑1 (MQ=255)
                                           atcaaTTTGTAAAAAATCATAGTTTTTATGCTTTTTATTATTCTTATACAAATTACAACCCTTTCAAAGTGTTTTTTTTTTG‑‑‑G‑‑‑T‑‑‑TTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGATTTGGAt                                                                                       <  2:2044361/124‑1 (MQ=255)
                                            tacATTTTTAAAAAAGTCTTTGTTATATGATTTTTTTTATAATTATAAAAATTTAAAATCTTTAAAATTTTATTTTTTAG‑‑‑G‑‑‑T‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGATTTGGa                                                                                        <  1:1441174/126‑1 (MQ=255)
                                                    tAAAAAATCCTATGTTTTTTTTTTTTTTTTATATTTATCAAAATTTAAACTGTTTAAAATTGTTTTTTTTTG‑‑‑G‑‑‑G‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCaa                                                                               <  2:4197035/128‑1 (MQ=255)
                                                     aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑TAAAATAAATATAAGATTTTGATAAACCaaa                                                                              >  1:3606956/1‑128 (MQ=255)
                                                     aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAATTAAAATTTTGAAAAACCaaa                                                                              >  1:2301609/1‑128 (MQ=255)
                                                        aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATAAAAATTTTGATCAAACAAAACt                                                                           >  2:6406030/1‑128 (MQ=255)
                                                           gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑CTAGTTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAATTAAAAGAAAGATTTAGTAAAACCAAAGAtata                                                                        >  1:4195761/1‑128 (MQ=255)
                                                           gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAAGTAAGATTTGTATCAAAAAAAACtattt                                                                       >  1:133313/1‑126 (MQ=255)
                                                                 tgtttttgtgtttttatttttaTTATTAACATTTTAAAGCTTTTAAATTTTTTTTTTTTG‑‑‑GGTTT‑‑‑TTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                 <  2:3560970/118‑1 (MQ=255)
                                                                 tGTTTTATGTTTTTTTTTATTCTTATAAACATAAATACGTTTTTAAAGTTTATTTTTTAG‑‑‑G‑‑‑G‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                 <  2:6632119/128‑1 (MQ=255)
                                                                 tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTTTTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAATATTTGGATCATACAAAAATATATCaa                                                                  >  1:1013676/1‑128 (MQ=255)
                                                                   ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑TAAAATAAAATTAACATTTGTAAAACCAAAAcataatacaaaaa                                                                >  2:5428097/1‑116 (MQ=255)
                                                                   ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAAAAATTTGATAAAACaaaaaattataaaaat                                                                 >  1:4122153/1‑116 (MQ=255)
                                                                     cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTTTTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGATTTGGAGAAAAAAAAACTATATAaaaaaa                                                              >  2:652854/1‑128 (MQ=255)
                                                                     cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAATATTTGTTTAAACCAAAACTATTTCaaaataa                                                             >  2:2431279/1‑128 (MQ=255)
                                                                     cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAAATAAAGTAAATTTTTGATCAACCAAAAGTATAGAAAAAAAAt                                                            >  1:684099/1‑128 (MQ=255)
                                                                      ttttttttttatttttaTTTTAAATATTAAAAAGATTTAAAATTGTATTTTTTAT‑‑‑T‑‑‑T‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaa                                                         <  1:248082/123‑1 (MQ=255)
                                                                      tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTTTTAGT‑‑‑‑AAAAATAAACTAAAAAATTTGATCACCCAAAACTATTTATAAAAAtt                                                           >  1:3040204/1‑128 (MQ=255)
                                                                       aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAAGTATTTTTTGGATAAAACAAAAGTTAAAAAAAAAAttt                                                          >  2:5367479/1‑127 (MQ=255)
                                                                       aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAATATTTGGATCAACAAAAACTATATCAAAAAATATaaa                                                        >  2:5311794/1‑128 (MQ=255)
                                                                        tttttttttttATAATTATAAAAATTTAAACGCTTTTAAATTGTTTTTTTTTG‑‑‑G‑‑‑CTTTTTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTa                                                          <  2:1068555/125‑1 (MQ=255)
                                                                        ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAAAATTTGGATAAACAAAAAAAATATCAAAAAAATTa                                                          >  2:3219446/1‑128 (MQ=255)
                                                                         gCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAAAATTTTTATAAACAAAAAAAATAAAAAAAAAATTaa                                                         >  1:1701513/1‑128 (MQ=255)
                                                                           tttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAAAAAAATTAAATATTGTAAAAAACAAAAAAATATAAAAAAAATAaaaa                                                       >  1:4475736/1‑128 (MQ=255)
                                                                             tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAATATTTTTATAAAACAAAAATATATAAAAAAAATTtaaaaa                                                     >  1:2392978/1‑128 (MQ=255)
                                                                              ttattaTATATATCAACATTTAAAAGTTTTTAAATTGTATTTTTTTTG‑‑‑GT‑‑T‑‑‑TTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaaaa                                                   <  2:298082/128‑1 (MQ=255)
                                                                              ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAATATAATAATTTGGAAAAAACAAAATAATAtaaaaaaaataaaaaaaa                                                    >  2:4956657/1‑128 (MQ=255)
                                                                                   ataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAATATTTGGAACAACCAAAAATATTTCAAAAAAATATAAAAATAtagt                                              >  1:6243753/1‑128 (MQ=255)
                                                                                    taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAAAATTTTGATAAACCAAAAATAAATAAAAAAAATTAAAAAAAAaatttt                                            >  1:6299917/1‑128 (MQ=255)
                                                                                     cgatATCAAATTTAAAACTCTTTAAAATTTTTTTTTTTAT‑‑‑G‑‑‑T‑‑‑TTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttagt                                         <  2:5843841/125‑1 (MQ=255)
                                                                                     aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTTTTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAATATTTGGATAAACAAAAAATTTATAAAAAAATTTAAAAAAAAtagtt                                             >  1:5246897/1‑128 (MQ=255)
                                                                                      cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAAAATTTTGTTAAAACAAAAATATTAAAAAAAAATTAAAAAAAAtatttta                                           >  1:5524864/1‑128 (MQ=255)
                                                                                      cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TTA‑‑‑AAAAAAAAAATTAAATTTTTGATAAAACAAAAATATATAAAAAAAATTAAAAAAAAtaatttttt                                         >  1:1994506/1‑125 (MQ=255)
                                                                                       ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTTTTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAAAAAAATTAATATTTGGAACACAAAAAAATATAACAAAAAAATTAAAAAAAAaatttta                                           >  2:1698058/1‑128 (MQ=255)
                                                                                       ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TTTTTAAAAAAAAAAATTAAAATTTGGAAAACACAAAAAAAataaaaaaaaaataaaaaaaaaattttt                                             >  1:514746/1‑122 (MQ=255)
                                                                                        tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTTTTTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAAAAAAATTAATATTTTTAAAAACAAAAAATATAAAAAAAAAATTAAAAAAAAtatttta                                           >  1:90897/1‑128 (MQ=255)
                                                                                        tATCAACATTACAACGCTTTCAAAGTGTAGTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TTTTATTTTTT‑‑‑GT‑‑‑‑AAAAAAAAAATTAAGATTTGGATAAACCAAAACTATATCAAAAAAATTAAAAAAAAtatttaata                                         >  1:6180145/1‑124 (MQ=255)
                                                                                        tATCAACATTACAACGCTTTCAAAGTGGATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAAATTTTGGAAAAACCAAAAAATAAAAAAAAAAATTAAAAAAAAtattttttt                                         >  2:5606751/1‑125 (MQ=255)
                                                                                         aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TTTTTAAAAAATAAAAAAAATATTTTAAAAAACAAAAAAAAATAAAAAAAAATAAAAAAAAaattttattt                                        >  2:4445467/1‑128 (MQ=255)
                                                                                          tCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATAATAATTTGGTAAAACAAAAAATTATAAAAAAAAATTAAAAAAAAaattttatttt                                       >  2:2498290/1‑127 (MQ=255)
                                                                                          tCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAAGATTTTGATAAAAAAAAAAAAATAAAAAAAAATTAAAAAAAtattttttgttta                                     >  2:1547604/1‑121 (MQ=255)
                                                                                          tCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTTTTATT‑‑‑‑AAAAATAAAATAAAAATTTTTATAAACCAAAAATATATAAAAAAAAATTAAAAATAtattttatatt                                       >  1:5798319/1‑124 (MQ=255)
                                                                                           cAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑TAAAATAAAAATAAGATTTGGAACAACAAAAACTAAAAAAAAAAAATTAAAAAAAATATTTTATTTGAg                                    >  2:5208506/1‑128 (MQ=255)
                                                                                               aTTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAAAAAAATTAAAATTTTTATCAAACAAAAATAATTAAAAATAATTAAAAAAAATATTTTAGTTTAtttt                                 >  1:5007412/1‑128 (MQ=255)
                                                                                                ttACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAAGATTTGGATCACCCAAAAATATAAAAAAAAATTTAAAAAAATATGTTAAGTTTAGttac                                >  1:6539371/1‑126 (MQ=255)
                                                                                                 tACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑TAAAATAAAATTAATATTTTGATCAACAAAAAAATTATATAAAAAAATTAAAAAAATATTTTATTTTAGtttaa                               >  1:1770732/1‑126 (MQ=255)
                                                                                                  aCAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTTTTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAATATTTGGATCAACCAAAAATATATAAAAAAAATTAAAAAAAATTGTTTTTTAGAGtttaa                               >  1:6016263/1‑126 (MQ=255)
                                                                                                   cAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TTTTAAAAAAAAAAATTAATATTTTGAAAAAACAAAAAAATAAGAAAAAAATAAAAAAAAAttgtttattttgtttgaaaa                              >  2:2837468/1‑118 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAAAAAAATTAAGATTTGGTTACACAAAAACTATATAAAAAAAATTAAAAAAAAAATTTTATTTGatgtgataata                           >  1:735739/1‑118 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAAAAAAAATAAGATTTTTAAAAACAAAAAATATATAAAAAAAATTAAAAAAAAAATTTAAATTGATTTTAAAATc                           >  1:2249246/1‑128 (MQ=255)
                                                                                                       gCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAAGTTATATTTGGTACAAACAAAAAAATATCAAAAAAAATAAAAAAAAAATTTTATTTTATTTTaaaaaatg                         >  1:334471/1‑124 (MQ=255)
                                                                                                          ttCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTTTTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑TAAAATAAAAGTTATATTTTGTTAAACCAAAAAAATAAAAAAAAAATTAAAAAAAATATTTTATTTTTGTTTAAAAtaggca                       >  1:2862509/1‑123 (MQ=255)
                                                                                                          ttCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAATAGAAAGATTTGGATCAAGCAAAAGATATTAAAAAAAAATAAAAAAAAAATTTTTGTTTAGttaatattcagata                      >  1:1629983/1‑116 (MQ=255)
                                                                                                           tCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑TAAAATAAAATTAATATTTTGATAAAACAAAAATATAAAAAAAAAATTAAAAAAAAAATTTTATTATAGTTTaaaaaattaata                     >  1:1132531/1‑120 (MQ=255)
                                                                                                            cAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAATTTTTTTTTATAACAAAAAATTATAAAAAAAATTAAAAAAAAAATTTTATTTTATTTTAAAAtattaataa                    >  1:2778538/1‑120 (MQ=255)
                                                                                                                 tgtATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATAAAATTTTGGATAAACCAAAACTTATTAAAAAAAATTAAAAAAAAATTATTATTTGATTTACAAATATGCttataaatg               >  1:4602233/1‑124 (MQ=255)
                                                                                                                  gtATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTTTTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAAAAAAATAAATTTTTGTAAAAACAAAAAATATATATAAAAAATTAAAAAAAAATTTTTAGTATAGTTAAAAATCATCATATATAga               >  1:2615502/1‑127 (MQ=255)
                                                                                                                    tATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTTTTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAATTAATATTTGGAAAAACCAAAAAAATAAAAAAAAAATTAAAAAAAATTTTTTATTTGAGTTTAAAAACAGAatatatttta              >  2:834939/1‑124 (MQ=255)
                                                                                                                       ttttttAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAAATTTGGATCACCCAAAACTATAAAAAAAAAATTAAAAAAAATATTTTTTGTTGGTTTCACAAAGGCATATATATAACaa           >  1:6091079/1‑128 (MQ=255)
                                                                                                                         ttttAG‑‑‑G‑‑‑C‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑TAAAATTAAAATTATTTTTTTTTTAACCAAAAAAAATTAAAAAAAAATTAAAAAAATTATTTATTTATAGTTTAAAATATACATATATAATAAAAAg         >  1:4329667/1‑128 (MQ=255)
                                                                                                                                            |                                                                                                                                                
TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTA  >  CP016816/203768‑204016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.