Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681634,9451.A44.8% 44.6 / inf 2241intergenic (+49/+117)JCVSYN2_00105/JCVSYN2_00110ABC transporter permease/cell division protein FtsH
Reads supporting (aligned to +/- strand):  ref base . (364/873);  new base A (924/79);  total (1288/953)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.60e-29

Only 100 of 2578 total aligned reads displayed.

CTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTT  >  CP016816/34818‑35072
                                                                                                                                     |                                                                                                                                     
  ttACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATACTGTTTGTTTTTATTATTTAATATT‑‑G‑‑aa                                                                                                                                    >  2:533718/1‑128 (MQ=255)
            aTGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACAAAATAAATTGTGTTTGTTTTTTTTATTTACTATT‑‑T‑‑aaaaaaaaaaaa                                                                                                                          >  1:2915130/1‑128 (MQ=255)
             tGATTTTCAAAAAAAATATTAATAAATGCTTAAACAATTAAAATGCTAATTTAATTTTTTTAATAATAAAATATTAAAAAAAATAAATTGTGTTTGGTTTTTTTATTTTATATT‑‑T‑‑aaaaaaaaaaaaa                                                                                                                         <  2:2658191/128‑1 (MQ=255)
             tGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACAATGAGTTTGTTTTTTTTATTTACTATT‑‑a‑‑aaaaaaaaaaaaa                                                                                                                         >  2:3702058/1‑128 (MQ=255)
               aGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTTTTTTTTTTATTTACTATT‑‑G‑‑aaaaaaaaaaaaaa‑‑a                                                                                                                     >  1:2649837/1‑128 (MQ=255)
               aGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGAGTATGGTTTATTTATTTAATATT‑‑G‑‑aaaaaaaaaaaaaa‑‑a                                                                                                                     >  1:52677/1‑128 (MQ=255)
                ttttAAACAAAAACAGTAATAAATGCTTAACCAATTAAAATGCTAAGTTAATTTTATTAAAAATAAAATATTAAAACAAAAAAATTTTGTTTGGTTTTTTTATTTACAATT‑‑T‑‑AAAAAAAAAAAAAa‑‑a‑‑t                                                                                                                  <  1:707895/127‑1 (MQ=255)
                gTTTCAACATAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTCAAGTTGATGAATAATAAAAGATTAAAAAAATTACATTGTGTTTGGTTTTTTTATTATCTATT‑‑G‑‑AATAAAAAAAAAat‑‑a‑‑t                                                                                                                  >  1:3500829/1‑128 (MQ=255)
                 tttCAAAAAAATTATTATGAAATGTTGAACAATGTACAATGCTAAGTTAAGTTTTTTAATAAAAAAAGATTAAACCAAATAAATTGTTTTTGGTTTTTTTATTTACTATT‑‑G‑‑aaaaaaaaaaaaaa‑‑aaa                                                                                                                   <  1:5893123/128‑3 (MQ=255)
                   tCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑AAAAAAAAAAAAAa‑‑a‑‑taaa                                                                                                              >  1:4448522/1‑127 (MQ=255)
                    caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGTTTTTATTATTTACTATT‑‑C‑‑aaaaaaaaaaaaaa‑‑a‑‑aaaat                                                                                                             >  1:477576/1‑126 (MQ=255)
                    caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑T‑‑aaaaaaaaaaaaaa‑‑aataaa                                                                                                                >  2:4533912/1‑123 (MQ=255)
                       caaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑aaaaaaaaaaaaaa‑‑a‑‑aaaatttt                                                                                                          >  1:6691023/1‑123 (MQ=255)
                            agagTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTACTATT‑‑G‑‑AAAAAAAAAAAAAA‑‑A‑‑AAATATAATTTgaa                                                                                                    >  2:1648128/1‑126 (MQ=255)
                              tttaataaATGTTGAACAAAGTAAAATGCTAAGTTAAGTTTATTAATAAAAAAACAATAAACCAAATACATTGTGTTTGGTTTTTTATTTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCa                                                                                                    <  1:6067726/126‑1 (MQ=255)
                              tgTAAGAAAGGTTTAACCAATTAAAATGTTAAGTTATTTTTTTTAATAATAAAATTTTAAACAAAATAATTTGTTTTTGGTTTTTTTATTTACTATTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCa                                                                                                    <  1:1837663/127‑1 (MQ=255)
                               gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATGCATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATATTTTTCAt                                                                                                   >  2:5972031/1‑128 (MQ=255)
                                  ataaaTGCTTAACCAATTTAAATTTTAATTTAATTTTATTAATAATAAAATATTAAACCAAATAAATTGTTTTTCGTTTTTTTATTTAATATTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACt                                                                                                <  1:4906899/126‑1 (MQ=255)
                                    aaattttGAACAAATTTCAATTGTAAGTTAAGTTGATTATTTATTAAATATTAAACCAATTATTTTTTGTTTGGTTTTTTTTTTTATTATT‑‑G‑‑TAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACtata                                                                                             <  2:5202706/122‑1 (MQ=255)
                                      aTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGAATACTATaaa                                                                                           >  2:3519078/1‑128 (MQ=255)
                                       tgatGAACCAAGTACAATGCTAAGTGATTTTTATGAAAAAAAAAAGATTAAACCAAATAAATTGTTTTTGGTTTTTTTATTTAATATTTAA‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATaa                                                                                            <  1:4195229/125‑1 (MQ=255)
                                           gAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAAAACATTGTGTTTGGTTATTTTATTTACTATTTAA‑‑AAAAAAAAAAAAAA‑‑A‑‑AAAAATAAATTTAAAACTATaaaaaa                                                                                        >  1:455965/1‑128 (MQ=255)
                                                aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑AAATATAATTTGAATAATATAAAAAAtttttt                                                                                  >  2:6195975/1‑128 (MQ=255)
                                                aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑AAAAAAAAAAAAAA‑‑A‑‑TAAAATAATTTGAATACTATAAAAAATTGtttt                                                                                 >  2:2373393/1‑128 (MQ=255)
                                                  gTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑AAATATAATTTAAAAAATATAAAAAATTAttttt                                                                                >  1:3261788/1‑128 (MQ=255)
                                                   tACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGAAAACTATAAAAAAtttttttt                                                                                >  1:5716992/1‑128 (MQ=255)
                                                       aTGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAAA‑‑A‑‑TAAAATAATTTTCAAAATAAAAAAAATTAttttaaaaa                                                                            >  2:4685022/1‑123 (MQ=255)
                                                       aTGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAAAATAATTTTAATACAATAAAAATTTTTTTTTAAATa                                                                          >  2:4050387/1‑128 (MQ=255)
                                                        tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTTCATAATAAAAAAAATTTTTTTTCaaaaa                                                                          >  1:1560902/1‑126 (MQ=255)
                                                          ttaagttaagtTGATTAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGt                                                                       <  1:5560885/127‑1 (MQ=255)
                                                          cTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑‑‑‑AAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAAAAAGTAtt                                                                    >  1:3032027/1‑128 (MQ=255)
                                                            aaGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTTAAAAATAAAAAAAATTTTTTTTAAAAAAAATa                                                                      >  2:2137403/1‑128 (MQ=255)
                                                            aaGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACAATAAAAAATTGTTTTTAAAATAATTAt                                                                     >  2:6088615/1‑128 (MQ=255)
                                                            aaGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑AAAAAAAAAAAAAA‑‑A‑‑AAAAAAAATTTGCATACTATAAAAAATTTTTTTTAAAATAATTAt                                                                     >  1:1221190/1‑128 (MQ=255)
                                                             aGTGAAGATGATGAATAATAAAAGATTAAACCAAAAACATTTTCTTTGGTTTTTTTATTTACTATA‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATTGAATTAGAATAGTAAAAAAAATTTATTTTAAAATAAgaaa                                                                     >  1:3601367/1‑125 (MQ=255)
                                                              gtgaatttttttaataatAAAATATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTAATTTTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAtt                                                                    <  1:2188113/116‑1 (MQ=255)
                                                              gTGAAGTTGATTAATAAAAAAATATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTAATATTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTAtt                                                                    <  1:5630974/128‑1 (MQ=255)
                                                              gTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGAATAATATAAAAAATTTTTTTTAAAAAATGTaat                                                                    >  1:396342/1‑126 (MQ=255)
                                                              gTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATTTAATTTGAATTATATAAAAAATTTTTTTTCAAATAATTATTc                                                                   >  2:5888274/1‑128 (MQ=255)
                                                               tgaatttttttaataatAAAAAATTAAACAAAATAAATTTTTTTTGGTTTTTTTATTTAATATTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTc                                                                   <  1:801396/117‑1 (MQ=255)
                                                               gtaaGTTTATTAAAATTAAATAATAAAAACAAAAACTTTGTGTTTGTTTTTTTTATTTACTATTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTc                                                                   <  1:860777/126‑1 (MQ=255)
                                                               agAAGTTGATGAATAATAAAAGATTAAACCAAATACATAGTCAATGGATTTTTTATTTACTATT‑‑G‑‑AAAAAAAAAAAAAA‑‑A‑‑TAAAAAAAATTTTGAAAAAATAAAAAATTATTTTTAAAAAAATTaata                                                                   >  2:6481746/2‑125 (MQ=255)
                                                                 atgttttttaataatAAAATATTAAACCAAATACTTTTTTTTTGGTTTTTTTTTTTAAATTTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAg                                                                 <  1:1479913/119‑1 (MQ=255)
                                                                     tgatgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGAATAATATAAAAAATTTTATTTAAAAAAAGAAttaataatt                                                             >  1:2772448/1‑121 (MQ=255)
                                                                       atgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGAATAAATTAAAAAATTTTTTTAAAAATAATAATTAATGATTaaa                                                          >  2:1497071/1‑128 (MQ=255)
                                                                         taataaaAAAATATTAAACAAAATAAATTGTGTTTTTTTTTTTTATTTACTATTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAAt                                                         <  1:2054115/127‑1 (MQ=255)
                                                                         gaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAAAATAATATAAAAAATATAAAAAATTATTTTAAAAATAAATAttaaatattaaat                                                         >  2:124620/1‑117 (MQ=255)
                                                                            taataaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGAATAATATAAAAAATTTTTTTTAAAAAATTTAATAAGTATTAAATTTa                                                      >  1:2560403/1‑128 (MQ=255)
                                                                                 aaaGATTAAACCAAATACATTGTGTTTGGTTATTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGAATAATATAAAAAATTTTTTTAAAAATAATAATTAAGTATTAAATTTaaaaaa                                                 >  1:6809430/1‑128 (MQ=255)
                                                                                     tttAAAAAAAATAAATTGTGTTTGGTTTTTTTATTTAATATTTAA‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCa                                              <  2:5475120/127‑1 (MQ=255)
                                                                                     aTTAAACCAAATACATTGTTTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAAA‑‑A‑‑AAAAAAAATTAAAATAAAAAAAAAAATTTTTTTAAAAATAATTATAAATAAATAAATTTaaaaaaaaa                                              >  2:2500299/1‑125 (MQ=255)
                                                                                     aTTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGAATACTATAAAAAATTGTTTTTAAAATAATTATTAAGGATTAAATTTAAAAAACaaaa                                            >  2:5718143/1‑127 (MQ=255)
                                                                                      ttAAACAAAATAATTTTTGTTTGTTTTTTTTTTTTAATTTTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAag                                            <  2:1399145/128‑1 (MQ=255)
                                                                                       taaaataaaTAATTTGTGTTTGGTTTTTTTATTTAATATT‑‑T‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAagag                                          <  2:5056626/122‑1 (MQ=255)
                                                                                       tAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAATTATTAATTATTAAATTTAAAAAACaaata                                           >  1:1154257/1‑126 (MQ=255)
                                                                                        aaaCCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTAAGGAGTAAATTTAAAAAACAAagag                                          >  1:5478624/1‑128 (MQ=255)
                                                                                        aaaCCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGAATACTATAAAAAATTTTTTTTAAAATAATTATTAAGTAGTAAATTTAAAAAAAAAagag                                          >  1:5148202/1‑128 (MQ=255)
                                                                                         aaCCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑AAAAAAAAAAAAAA‑‑A‑‑AAAATAAATTTAAAAAAAAAAAAAAATTTTTTTTAAAAAAATTATTAAAGTTTAAATTTAAAAAAACaaaaatt                                        >  2:6792104/1‑123 (MQ=255)
                                                                                            cAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAAAATAATTTGAATACTATAAAAAATTTTTTTTCAAATAAGTATTCAGGAGTAAAATTAAAAAACAAATATTtaa                                      >  2:4399888/1‑127 (MQ=255)
                                                                                            aaattACATTTTGTTTGTTTTTTTTATTTAATATT‑‑T‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                     <  1:64511/124‑1 (MQ=255)
                                                                                             aaaaaaaTTGTTTTTGGTTTTTTTTTTTAATATTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTtata                                     <  1:1944509/122‑1 (MQ=255)
                                                                                             aaaTAATTTGTTTTTTGTTTTTTTTTTTAATTATTAA‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtat                                      <  2:6570021/128‑1 (MQ=255)
                                                                                              aaTACATTGTTTTTGGTTTTTTTATTTAATATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATaa                                    <  1:6255420/128‑1 (MQ=255)
                                                                                              aaTACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATAATATAAAAAATTGTTTTTAAAATAAGTATTCAGGAGTAATTTTAAAAAACCAAAAGTTATaa                                    >  1:6153547/1‑128 (MQ=255)
                                                                                               aTACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTTTTTTTAAAATAAGTATTAAGGATTAAATTTAAAAAACCAATATTTATaaa                                   >  2:6714700/1‑128 (MQ=255)
                                                                                                taaaTTGTTTTTGTTTTTTTTATTTAATATTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAAt                                  <  2:1980661/125‑1 (MQ=255)
                                                                                                tACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTTCATACTATAAAAAATTGTTTTAAAAAAAATTATTAAGTAATAAATTAAAAAAACAAAGATaaataaat                                  >  1:4321370/1‑128 (MQ=255)
                                                                                                tACATTGTGTTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑AAATATAATTTGCATACTATAAAAAATTGTTTATAAAATAATAATTAATTAGTATATTTAAAAAACaaattttattaaat                                  >  1:3158584/1‑117 (MQ=255)
                                                                                                 taatttggtTTGGTTTTTTTTTTTTATATTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTTATAACTc                                 <  2:816734/121‑1 (MQ=255)
                                                                                                 aaattttttttGTTTTTTTTATTTAATATTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATc                                 <  2:1031308/120‑1 (MQ=255)
                                                                                                  cATTGTTTTTGTGTTTTTTATTTACAATT‑‑T‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCtt                               <  1:5353944/128‑1 (MQ=255)
                                                                                                   aTTTTGTTTGGTTTTTTTAATTAATATTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCtt                               <  2:715462/128‑1 (MQ=255)
                                                                                                    ttgtgttgtgTTTTTTTATTTAAATTTT‑‑AAAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCt                                <  2:5809540/128‑1 (MQ=255)
                                                                                                      tttttttttttatttatttaATATT‑‑T‑‑AAAAAAAAAAAAAAATA‑‑TAATATAATTTGAATACTATAAAAAATTGTTTTTCAAATAATTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTgg                             <  1:5969295/120‑1 (MQ=255)
                                                                                                       tgtTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑AAAAAAAATTTTAATAATATAAAAAATTTTTTTTAAAAAAATTATTAAATATAAAAATTAAAAAAACAAGATTTATaaaaatttttt                           >  2:3840394/1‑120 (MQ=255)
                                                                                                       tgtTTGGTTTTTTTATTTACTATT‑‑G‑‑AAAAAAAAAAAAA‑‑A‑‑TAATATAAATTGCATAAAATAAAAAATTGTTTTTAAAATAATTATTAAGTAGTAAATTTAAAAAACAAATATTTATAAATATTGTtttt                         >  2:1820855/1‑128 (MQ=255)
                                                                                                        gtTTGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATAATATAAAAAATTTTTTTTAAAATAATTATTAATGTGTAAATTTTAAAAACAAAGATTTATAAATATTGtttt                          >  1:5044217/1‑128 (MQ=255)
                                                                                                         tttGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAAA‑‑A‑‑TAATATATTTTGCATAATATAAAAAATTTTTTTACAAATAATTATTCATGATTAAATTTAAAAAAAAAAAAGTTATAAATCTTTGtta                          >  1:2422655/1‑127 (MQ=255)
                                                                                                         tttGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTTCATAATATAAAAAATTGTTTTTAAAATAATTATTAATGATTAAATTTAAAAAACCAATATTTTTAAATATTGGtttt                         >  1:3718145/1‑128 (MQ=255)
                                                                                                           tttttttttaATTTAATATT‑‑T‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAAATTGCATACTAAAAAAAATTGATTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACAAAGAGTTATAAATCTTGGTTTTTTg                      <  2:2964646/125‑1 (MQ=255)
                                                                                                           tGGTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATAATTTAAAAAATTGTTTTTCAAATAAGTATTCAGTAGTAAATTTAAAAAACCAATATTTATAAATCTTGGttttt                        >  1:4113127/1‑128 (MQ=255)
                                                                                                            tgTTTTTTTATTTAATATTTAA‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGtttttt                       <  1:5807474/127‑1 (MQ=255)
                                                                                                            ggTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTAAAAAAAAAAAAAAATTTTTTTAAAAATAATAATAAAAGTAAAAATTTAAAAAACAAATAATTAAAAAAATTATtttttta                      >  2:2855574/1‑127 (MQ=255)
                                                                                                             tgttttttATTTTATATT‑‑GAAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTg                      <  1:1734796/126‑1 (MQ=255)
                                                                                                             gTTTTTTTATTTACTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTTCAAAATATAAAAAATTTTTTTAAAAATAATTATTAATTATTAAATTAAAAAAACAAAAAATTATAAATATTTAtttttttt                     >  1:1003473/1‑126 (MQ=255)
                                                                                                              ttttttttttTATTTTTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGtt                    <  2:1140118/128‑1 (MQ=255)
                                                                                                              tttttttATTTTTAATTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGtt                    <  2:4229955/128‑1 (MQ=255)
                                                                                                                 ttttATTTACTATT‑‑G‑‑AAAAAAAAAAAAAA‑‑A‑‑AAATATAATTTTAATACTTAAAAAAATTTTTTTTCAAATAAGTATAAATTAGTAAATTTAAAAAAAAAATAGTTATAAATATTGGTTTTTTGTTtata                >  1:4682426/1‑128 (MQ=255)
                                                                                                                 ttttATTTAATATTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtat                 <  2:4916208/128‑1 (MQ=255)
                                                                                                                 ttttATTTAATATTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtat                 <  2:5590205/128‑1 (MQ=255)
                                                                                                                    ttttttaataaTT‑‑A‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTatat               <  2:312215/118‑1 (MQ=255)
                                                                                                                    tatttaCTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑AAAAATAATTTTCAAACTAAAAAAAATTTTTTTTCAAATAATTATTAAGAAGTAAATTAAAAAAACAAAAATTTAAAAAAAATTGTTTTTTTTATAtatt              >  2:2262438/1‑128 (MQ=255)
                                                                                                                     atttaATATT‑‑TAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTATCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTTATAACTCTTGGttttttaaatttactc             <  1:6566016/128‑11 (MQ=25)
                                                                                                                       ttaCTATT‑‑GAAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATAATATAAAAAATTTTTTTTAAAATAAGTATTAAGGATTAAATTTAAAAAACAAAGAGTTAAAAATATTGTTTTTTGGTTTAtataat            >  1:3819200/1‑128 (MQ=255)
                                                                                                                       ttaCTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATAATATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACAAAGAGTTATAAAGGTTGGTTTTTTGTTTAtattttt           >  1:2301820/1‑128 (MQ=255)
                                                                                                                       ttaCTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATAATAAAAAAAATTGTTTTTAAAATAAGTATACAGGAGTAAATTAAAAAAACCAAGAGTTATAAATATTGGTTTTTTGTTTAaattatt           >  2:3370230/1‑128 (MQ=255)
                                                                                                                       ttaCTATT‑‑G‑‑AAAAAAAAAAAAAA‑‑AATTAATATATTTTGATTAATATAAAAATTTTTTTTTAAAATAATTATTAAGGATTAAATTTAAAAAACAAAAATTTATAAATATTGTTTTTTTTTTTAtatttt            >  1:1390256/1‑126 (MQ=255)
                                                                                                                        taCTATT‑‑G‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtattattat         <  1:6346387/128‑1 (MQ=255)
                                                                                                                          aCTATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATAATATAAAAAATTGTTTTTCAAATAAGTATTAAGTATTAAATTTAAAAAACAAAGAGTTATAAATATTGGTTTTTTTTTTAaattattat         >  1:336519/1‑128 (MQ=255)
                                                                                                                             tATT‑‑GAAAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGAAAAATATAAAAAATTTTTTTTAAAATAATTATTAAGGTTTAAATTTAAAAAACAAATAGTTATAAATATTGTTTTTTTTTTTATATTATTAttt       >  2:6366190/1‑128 (MQ=255)
                                                                                                                                     |                                                                                                                                     
CTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTATTTACTATT‑‑G‑‑AAAAAAAAAAAAAA‑‑A‑‑TAATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTT  >  CP016816/34818‑35072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: