Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP016816 | 203,895 | 3 | . | T | 56.1% | inf / inf | 554 | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
Reads supporting (aligned to +/- strand): ref base . (149/94); new base T (267/43); total (416/138) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.79e-11 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 769 total aligned reads displayed.
TTTAATTTTTTTTATAAAAAAAAATA‑AAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GATTTGGATCA‑ACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATA‑GTTTAGTT‑GAGTTTCAAATCTGCATATATAGTACAAAGGAATTTA > CP016816/203768‑204016 | tttAATTTTTTTTATAAAAAAAAATA‑AAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑T‑‑‑C‑‑‑TTg > 1:559579/1‑128 (MQ=255) tttAATTTTTTTTATAAAAAAAAATA‑AAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGATTTCAAAGTG‑TA‑TTTTTTAT‑‑‑G‑‑‑C‑‑‑TTg > 1:4715644/1‑128 (MQ=255) tatAAATTTTTTTA‑AAAAAAAAATATATAATTTTTTATTTATAGCCATTTTTAAAAAAGCTTA‑TGTTCTATGCTTTTTATTATTCTTATCAACATTAAAACGCTTTCAAATTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTg < 1:1548758/126‑1 (MQ=255) aaTTTTTTTTATAAAAAAAAATA‑AAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑ttt > 1:5722002/1‑128 (MQ=255) aaTTTTTTTTATAAAAAAAAATA‑AAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTAATATACTTATCAAAATTTCAACTCTTACAAATTG‑TA‑AATTTTAG‑‑‑G‑‑‑C‑‑‑ttt‑‑‑‑‑ttt > 2:6037624/1‑128 (MQ=255) aTTTTTTTTATAAAAAAAAATA‑AAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATCCTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TGG‑‑‑‑‑tttt > 1:5100723/1‑128 (MQ=255) ttttttttAATAAAAAAAATA‑AAAATTTTTAATTTAAACCCATTTTTAAAAAACCCTA‑TGTTCTAGGCTTTTTATTATAATTATCAAAATAACAACGCTTTCAAATTT‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑ttttt < 1:1924722/128‑1 (MQ=255) tttttttAT‑AAAAAAAATT‑AAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑ttttttt > 1:5292861/1‑128 (MQ=255) ttttttATAAAAAAAAATA‑AAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑ttttttt > 1:6615118/1‑128 (MQ=255) ttttttATAAAAAAAAATA‑AAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑ttttttt > 1:792490/1‑128 (MQ=255) tttATAAAAAAAAATA‑AAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt > 1:6377976/1‑128 (MQ=255) tttATAAAAAAAAATA‑AAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt > 2:5646343/1‑128 (MQ=255) ataaaaaaaaaaTA‑AATATTTTTAAATTAATTCCATTTGTAAAAAACCCTT‑TGTTTTAGGCTTTTTATTATAATTATAAAAATTACAACGCTTTCAAAGTT‑TT‑TTTTTTAG‑‑‑G‑‑‑G‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt‑‑‑tt < 2:1379761/125‑1 (MQ=255) ataAAAAAAAATA‑AAAATATTTTAATTAAATACATTTTTTAAAATGACTT‑TTTTTTATTTTTTTTTTTATAATTATTAAAATTATAACTCTTTTAAATTT‑TT‑TTTTTTAG‑‑‑G‑‑‑T‑‑‑ttt‑‑‑‑‑tttttttt‑‑tt‑‑‑ttt < 2:2195291/128‑1 (MQ=255) taAAAAAAAATA‑AAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGGTCTATGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑ttattttt‑‑tt‑‑‑tttt > 1:5429233/1‑128 (MQ=255) aaaaaaaaTA‑AAAATTTTTAATTTTAATCCATTTTTAAAAAA‑CCTATTTTTCTAGGTTTTTTATTAAATTTATAAAAATTAAAACCTTTTAAAATTT‑TT‑TTTTTTTT‑‑‑G‑‑‑C‑‑‑Ttt‑‑‑‑‑tttttttt‑‑tt‑‑‑tttttt < 2:3738339/128‑1 (MQ=255) tataaata‑taaatTTTTAAATTATATTAATTTTTAAAAATTCATA‑TTTTTTTTTTTTTTTTTTATTATTATAAAAAATACAACCGTTTCAAATTT‑TA‑TTTTTTTT‑‑‑G‑‑‑T‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt‑‑‑tttttttt < 2:5924799/125‑3 (MQ=255) aaaaaaTA‑AAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt‑‑‑tttttttt > 1:6748977/1‑126 (MQ=255) aaata‑aaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt‑‑‑ttttttttttt > 1:2084273/1‑123 (MQ=255) aaaaa‑aaaatTTTTAATTTAAATCCATTTGTAAAAAATACTA‑TTTTTTTGGGTTTTTATTTAAATTTTTAAAATTAAAACGTTTTCAATTTT‑TT‑TTTTTTTG‑‑‑G‑‑‑C‑‑‑Ttt‑‑‑‑‑tttttttt‑‑tt‑‑‑tttttttttgt < 2:6497781/128‑6 (MQ=255) ata‑aaaatTTTTCATTTAACGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTATTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTGTT‑‑‑TT‑‑‑‑attaa > 1:3490767/1‑124 (MQ=255) ata‑aaaatTTTTCATTTAAAGCCATTTGTAAAAACGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑A‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt‑‑‑tttttttttttta > 2:3610787/1‑121 (MQ=255) ata‑aaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTT‑TA‑TTTTTTAG‑‑‑G‑‑‑A‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑taaaa > 1:4032064/1‑128 (MQ=255) aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt‑‑‑tttttttttttaaaaaa > 2:722041/1‑117 (MQ=255) aaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt‑‑‑ttttttttttgtaaaaa > 1:492628/1‑117 (MQ=255) aatTTTTTATTTAAATCAATTT‑AAAAAAATCTTA‑TTTTAAATTCTTTTTTTTAAAAATATTAAAATTAACACGCTTTAAAAGTGTTT‑TTTTTTGG‑‑‑G‑‑‑T‑‑‑TTG‑‑‑‑‑tttttttt‑‑tt‑‑‑ttttttttttgtaaaaat < 2:5825745/128‑13 (MQ=255) attttTATTTAAATCCATTTTTAAAAAATCCTA‑TTTTCTATGTTTTTTTTTATAATTATAAACATTAAAAAGCTTTTAAATTT‑TA‑TTTTTTAT‑‑‑T‑‑‑CTTTTTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATaaa < 2:628853/127‑1 (MQ=255) ttttCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATaaaa > 1:5350175/1‑128 (MQ=255) ttttCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TAG‑‑‑‑‑TTTTTTTTTATT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATaaaat > 1:3182117/1‑127 (MQ=255) ttCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑ATAAATAAAAGt > 1:3687011/1‑128 (MQ=255) aaTTTTAATCCTTTTTTAAAAAATCCTA‑TTTTTTATGTTTTTTTTTTTAAATATAAACATTACAACGCTTTCAAATTT‑TT‑TTTTTTTT‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTaa < 2:6832491/127‑1 (MQ=255) aTTTAAATAAATTTGTAAAAATTTCTA‑TTTTCTATGCTTTTTATTATAATTTTCAACTTTAAAAAGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GAtt < 1:3835138/128‑1 (MQ=255) aTTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAATTAAAAGTAA‑GAtt > 2:3939265/1‑128 (MQ=255) tttAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑‑TTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAATTAA‑TATTTg > 2:5141557/1‑128 (MQ=255) ttAAACCCAATTTTAAAAAATCATA‑TTTTCTATGCATTTTATTAAAATTATAAAAATTAAAACGCTTTAAAATTG‑TT‑TTTTTTTG‑‑‑G‑‑‑G‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GAtt < 2:5722002/128‑1 (MQ=255) tAAATCCATTTTTAAAAAAGCCTA‑TGTTCTTGGCTTTTTATTATACTTATAAAAATTACAACCCTTTCAAATTG‑TA‑TTTTTTTG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GAtt < 1:5883310/128‑1 (MQ=255) aatcccAATTTTAAAAATGCATT‑TTTTATAGGTTTTTTTTTTAAATTAAGAAAATTACAACGCTTTAAAATTG‑TT‑TTTTTTAT‑‑‑G‑‑‑G‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GATTTg < 2:6748977/124‑1 (MQ=255) aaatcaaTTTGTTAAAAAGCATA‑TTTTTTTTGATTTTTTTTAAAATTATAAAAAATAAAAACCTTTAAAATTG‑TT‑TTTTTTAGTTTT‑‑‑T‑‑‑TTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GAttt < 2:6188484/122‑1 (MQ=255) aatccATTTGTAAAAAATCCTA‑TTTTTTAGGCTTTTTATTATAATTATCAACATTAAAACGCTTTAAAATTG‑TT‑TTTTTTTG‑‑‑G‑‑‑C‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GATTTgg < 2:5519240/125‑1 (MQ=255) aatcaaTTTTTAAAAAATTCTA‑TTTTTTTTGTTTTTTATTATTATTATTAAAATTTAAAAGCTTTAAAATTGTTT‑TTTTTTTG‑‑‑G‑‑‑T‑‑‑TTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GATTTGGa < 2:1921440/123‑1 (MQ=255) atcaaTTTGTAAAAAATCATA‑GTTTTTATGCTTTTTATTATTCTTATACAAATTACAACCCTTTCAAAGTGTTT‑TTTTTTTG‑‑‑G‑‑‑T‑‑‑TTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GATTTGGAt < 2:2044361/124‑1 (MQ=255) tacATTTTTAAAAAAGTCTT‑TGTTATATGATTTTTTTTATAATTATAAAAATTTAAAATCTTTAAAATTT‑TA‑TTTTTTAG‑‑‑G‑‑‑T‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GATTTGGa < 1:1441174/126‑1 (MQ=255) tAAAAAATCCTA‑TGTTTTTTTTTTTTTTTTATATTTATCAAAATTTAAACTGTTTAAAATTG‑TT‑TTTTTTTG‑‑‑G‑‑‑G‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GATTTGGATCA‑ACCaa < 2:4197035/128‑1 (MQ=255) aaaaaaGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑TAAAATAAATATAA‑GATTTTGATAA‑ACCaaa > 1:3606956/1‑128 (MQ=255) aaaaaaGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAATTAA‑AATTTTGAAAA‑ACCaaa > 1:2301609/1‑128 (MQ=255) aaaGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATAAA‑AATTTTGATCA‑AACAAAACt > 2:6406030/1‑128 (MQ=255) gCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑CTAGTTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAATTAAAAGAAA‑GATTTAGTAAA‑ACCAAAGAtata > 1:4195761/1‑128 (MQ=255) gCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAAGTAA‑GATTTGTATCA‑AAAAAAACtattt > 1:133313/1‑126 (MQ=255) tgtttttgtgtttttatttttaTTATTAACATTTTAAAGCTTTTAAATTT‑TT‑TTTTTTTG‑‑‑GGTTT‑‑‑TTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GATTTGGATCA‑ACCAAAACTATA‑T‑Caaa < 2:3560970/118‑1 (MQ=255) tGTTTTATGTTTTTTTTTATTCTTATAAACATAAATACGTTTTTAAAGTT‑TA‑TTTTTTAG‑‑‑G‑‑‑G‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GATTTGGATCA‑ACCAAAACTATA‑T‑Caaa < 2:6632119/128‑1 (MQ=255) tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTT‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAA‑TATTTGGATCA‑TACAAAAATATA‑T‑Caa > 1:1013676/1‑128 (MQ=255) ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑TAAAATAAAATTAA‑CATTTGTA‑AA‑ACCAAAAcataatacaaaaa > 2:5428097/1‑116 (MQ=255) ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAA‑AAATTTGATAA‑AACaaaaaattataaaaat > 1:4122153/1‑116 (MQ=255) cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTT‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GATTTGGAGAA‑AAAAAAACTATA‑T‑Aaaaaaa > 2:652854/1‑128 (MQ=255) cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAA‑TATTTGTTTAA‑ACCAAAACTATT‑T‑Caaaataa > 2:2431279/1‑128 (MQ=255) cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAAATAAAGTAA‑ATTTTTGATCA‑ACCAAAAGTATA‑G‑AAAAAAAAt > 1:684099/1‑128 (MQ=255) ttttttttttatttttaTTTTAAATATTAAAAAGATTTAAAATTG‑TA‑TTTTTTAT‑‑‑T‑‑‑T‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GATTTGGATCA‑ACCAAAACTATA‑T‑CAAAAAAATTaa < 1:248082/123‑1 (MQ=255) tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTTTTAGT‑‑‑‑AAAAATAAACTAAA‑AAATTTGATCA‑CCCAAAACTAT‑‑T‑TATAAAAAtt > 1:3040204/1‑128 (MQ=255) aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAAGTAT‑TTTTTGGATAA‑AACAAAAGT‑TA‑A‑AAAAAAAAttt > 2:5367479/1‑127 (MQ=255) aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑TATTTGGATCA‑ACAAAAACTATA‑T‑CAAAAAATATaaa > 2:5311794/1‑128 (MQ=255) tttttttttttATAATTATAAAAATTTAAACGCTTTTAAATTG‑TT‑TTTTTTTG‑‑‑G‑‑‑CTTTTTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GATTTGGATCA‑ACCAAAACTATA‑T‑CAAAAAAATTa < 2:1068555/125‑1 (MQ=255) ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAA‑AATTTGGATAA‑ACAAAAAAAATA‑T‑CAAAAAAATTa > 2:3219446/1‑128 (MQ=255) gCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAA‑AATTTTTATAA‑ACAAAAAAAATA‑A‑AAAAAAAATTaa > 1:1701513/1‑128 (MQ=255) tttttATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAAAAAAATTAA‑ATATTGTAAAA‑AACAAAAAAATA‑T‑AAAAAAAATAaaaa > 1:4475736/1‑128 (MQ=255) tttATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAA‑TATTTTTATAA‑AACAAAAATATA‑T‑AAAAAAAATTtaaaaa > 1:2392978/1‑128 (MQ=255) ttattaTATATATCAACATTTAAAAGTTTTTAAATTG‑TATTTTTTTTG‑‑‑GT‑‑T‑‑‑TTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GATTTGGATCA‑ACCAAAACTATA‑T‑CAAAAAAATTaaaaaaaa < 2:298082/128‑1 (MQ=255) ttattaTACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAATATAATAATTTGGAAAA‑AACAAAATAATA‑t‑aaaaaaaataaaaaaaa > 2:4956657/1‑128 (MQ=255) ataCTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAA‑TATTTGGAACA‑ACCAAAAATATT‑T‑CAAAAAAATATAAAAATAta‑gt > 1:6243753/1‑128 (MQ=255) taCTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAA‑AATTTTGATAA‑ACCAAAAATAAA‑T‑AAAAAAAATTAAAAAAAAaa‑tttt > 1:6299917/1‑128 (MQ=255) cgatATCAAATTTAAAACTCTTTAAAATTT‑TT‑TTTTTTAT‑‑‑G‑‑‑T‑‑‑TTT‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GATTTGGATCA‑ACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAAta‑gtttagt < 2:5843841/125‑1 (MQ=255) aCTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTT‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAA‑TATTTGGATAA‑ACAAAAAATTTA‑T‑AAAAAAATTTAAAAAAAAta‑gtt > 1:5246897/1‑128 (MQ=255) cTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAA‑AATTTTGTTAA‑AACAAAAATATT‑A‑AAAAAAAATTAAAAAAAAta‑tttta > 1:5524864/1‑128 (MQ=255) cTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TTA‑‑‑AAAAAAAAAATTAA‑ATTTTTGATAA‑AACAAAAATATA‑T‑AAAAAAAATTAAAAAAAAta‑atttttt > 1:1994506/1‑125 (MQ=255) ttATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTT‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAAAAAAATTAA‑TATTTGGAACA‑CAAAAAAATATA‑A‑CAAAAAAATTAAAAAAAAaa‑tttta > 2:1698058/1‑128 (MQ=255) ttATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TTTTTAAAAAAAAAAATTAA‑AATTTGGAAAACACAAAAAAAata‑a‑aaaaaaaataaaaaaaaaattttt > 1:514746/1‑122 (MQ=255) tATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTTTTTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAAAAAAATTAA‑TATTTTTAAAA‑ACAAAAAATATA‑A‑AAAAAAAATTAAAAAAAAta‑tttta > 1:90897/1‑128 (MQ=255) tATCAACATTACAACGCTTTCAAAGTG‑TA‑GTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TTTTATTTTTT‑‑‑GT‑‑‑‑AAAAAAAAAATTAA‑GATTTGGATAA‑ACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAAta‑tttaata > 1:6180145/1‑124 (MQ=255) tATCAACATTACAACGCTTTCAAAGTG‑GA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAA‑ATTTTGGAAAA‑ACCAAAAAATAA‑A‑AAAAAAAATTAAAAAAAAta‑ttttttt > 2:5606751/1‑125 (MQ=255) aTCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TTTTTAAAAAATAAAAAAAA‑TATTT‑TAAAA‑AACAAAAAAAAA‑T‑AAAAAAAAATAAAAAAAAaa‑ttttattt > 2:4445467/1‑128 (MQ=255) tCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAA‑TAA‑TAATTTGGTAA‑AACAAAAAATTA‑TAAAAAAAAATTAAAAAAAAaa‑ttttatttt > 2:2498290/1‑127 (MQ=255) tCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAA‑GATTTTGAT‑A‑AAAAAAAAAAAA‑T‑AAAAAAAAATTAAAAAAAta‑ttttttgttta > 2:1547604/1‑121 (MQ=255) tCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTTTTATT‑‑‑‑AAAAATAAAATAAA‑AATTTTTATAA‑ACCAAAAATATA‑T‑AAAAAAAAATTAAAAATAta‑ttttatatt > 1:5798319/1‑124 (MQ=255) cAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑TAAAATAAAAATAA‑GATTTGGAACA‑ACAAAAACTAAA‑A‑AAAAAAAATTAAAAAAAATA‑TTTTATTT‑GAg > 2:5208506/1‑128 (MQ=255) aTTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAAAAAAATTAA‑AATTTTTATCA‑AACAAAAATAAT‑T‑AAAAATAATTAAAAAAAATA‑TTTTAGTT‑TAtttt > 1:5007412/1‑128 (MQ=255) ttACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAA‑GATTTGGATCA‑CCCAAAAATATA‑‑‑AAAAAAAATTTAAAAAAATATGTTAAGTT‑TAGttac > 1:6539371/1‑126 (MQ=255) tACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑TAAAATAAAATTAA‑TATTTTGATCA‑ACAAAAAAATTA‑T‑ATAAAAAAATTAAAAAAATA‑TTTTATTT‑TAGtttaa > 1:1770732/1‑126 (MQ=255) aCAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTT‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAA‑TATTTGGATCA‑ACCAAAAATATA‑T‑AAAAAAAATTAAAAAAAATT‑GTTTTTTA‑GAGtttaa > 1:6016263/1‑126 (MQ=255) cAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TTTTA‑AAAAAAAAAATTAA‑TATTTTGAAAA‑AACAAAAAAATA‑A‑GAAAAAAATAAAAAAAAAtt‑gtttattttgtttgaaaa > 2:2837468/1‑118 (MQ=255) aCGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAAAAAAATTAA‑GATTTGGTTAC‑ACAAAAACTATA‑T‑AAAAAAAATTAAAAAAAAAA‑TTTTATTT‑Gatgtgataata > 1:735739/1‑118 (MQ=255) aCGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAAAAAAAATAA‑GATTTTTAAAA‑ACAAAAAATATA‑T‑AAAAAAAATTAAAAAAAAAA‑TTTAAATT‑GATTTTAAAATc > 1:2249246/1‑128 (MQ=255) gCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAAGTTA‑TATTTGGTACA‑AACAAAAAAATA‑T‑CAAAAAAAATAAAAAAAAAA‑TTTTATTT‑TATTTTaaaaaatg > 1:334471/1‑124 (MQ=255) ttCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTT‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑TAAAATAAAAGTTA‑TATTTTGTTAA‑ACCAAAAAAATA‑A‑AAAAAAAATTAAAAAAAATA‑TTTTATTT‑TTGTTTAAAAtaggca > 1:2862509/1‑123 (MQ=255) ttCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAATAGAAA‑GATTTGGATCA‑AGCAAAA‑GATATT‑AAAAAAAAATAAAAAAAAAA‑TTTTTGTT‑TAGttaatattcagata > 1:1629983/1‑116 (MQ=255) tCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑TAAAATAAAATTAA‑TATTTTGATAA‑AACAAAAATATA‑A‑AAAAAAAATTAAAAAAAAAA‑TTTTATTA‑TAGTTTaaaaaattaata > 1:1132531/1‑120 (MQ=255) cAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATTAA‑TTTTTTTTTAT‑AACAAAAAATTA‑T‑AAAAAAAATTAAAAAAAAAA‑TTTTATTT‑TATTTTAAAAtattaataa > 1:2778538/1‑120 (MQ=255) tg‑tA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAATAAAATAAA‑ATTTTGGATAA‑ACCAAAACTTAT‑T‑AAAAAAAATTAAAAAAAAAT‑TATTATTT‑GATTTACAAATATGCttataaatg > 1:4602233/1‑124 (MQ=255) g‑tA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTT‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑AAAAAAAAAATAAA‑TTTTTGTAAAA‑ACAAAAAATATA‑T‑ATAAAAAATTAAAAAAAAAT‑TTTTAGTA‑TAGTTAAAAATCATCATATATAga > 1:2615502/1‑127 (MQ=255) tA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTGTTTT‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAATTAA‑TATTTGGAAAA‑ACCAAAAAAATA‑A‑AAAAAAAATTAAAAAAAATT‑TTTTATTT‑GAGTTTAAAAACAGAatatatttta > 2:834939/1‑124 (MQ=255) ttttttAG‑‑‑G‑‑‑C‑‑‑TTGTTT‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑AATTTGGATCA‑CCCAAAACTATA‑A‑AAAAAAAATTAAAAAAAATATTTTTTGTT‑G‑GTTTCACAAAGGCATATATATAACaa > 1:6091079/1‑128 (MQ=255) ttttAG‑‑‑G‑‑‑C‑‑‑TTGTT‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑TT‑‑‑‑TAAAATTAAAATTA‑TTTTTTTTTTA‑ACCAAAAAAAAT‑T‑AAAAAAAAATTAAAAAAATT‑ATTTATTTATAGTTTAAAATATACATATATAATAAAAAg > 1:4329667/1‑128 (MQ=255) | TTTAATTTTTTTTATAAAAAAAAATA‑AAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTA‑TGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTG‑TA‑TTTTTTAG‑‑‑G‑‑‑C‑‑‑TTG‑‑‑‑‑TTTTTTTT‑‑TT‑‑‑TTTTTT‑‑‑GT‑‑‑‑AAAAATAAAAGTAA‑GATTTGGATCA‑ACCAAAACTATA‑T‑CAAAAAAATTAAAAAAAATA‑GTTTAGTT‑GAGTTTCAAATCTGCATATATAGTACAAAGGAATTTA > CP016816/203768‑204016 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |