Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9120GT44.1% 598.8 / inf 759intergenic (+296/+162)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base G (93/328);  new base T (331/1);  total (429/330)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 831 total aligned reads displayed.

AAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203789‑204039
                                                                                                                                             |                                                                                                                                          
      aaatTATTAATTTAAATCCATTAGTAAAAAAGCCTATTTTTTTTGCTTTTTATTATAATTTTCAAAATTACAACGCTTTAAAATTGTTTTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑a                                                                                                                              <  2:5500171/128‑1 (MQ=255)
      aaatATTTTATTTTAATCTATTTTAAAAAAAGACTATTTTTATGTATTTTTTTTATAATTTTCAAAATTTCAACGTTTTTAATTTTTTTTTTTTT‑TG‑‑G‑‑‑TTGTT‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑a                                                                                                                              <  2:1230090/128‑1 (MQ=255)
           tttaatttaaATAAATTTTTAAAAAATCCTATTTTTTATTCTTTTTATTATAATTATAAAAATTAAAACGATTTCAAATTTTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTa                                                                                                                       <  1:2539398/128‑1 (MQ=255)
            ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑TAAAT‑AAAA‑Gt                                                                                                                        >  1:3687011/1‑128 (MQ=255)
              aaTTTTAATCCTTTTTTAAAAAATCCTATTTTTTATGTTTTTTTTTTTAAATATAAACATTACAACGCTTTCAAATTTTTTTTTTTT‑TG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTaa                                                                                                                      <  2:6832491/127‑1 (MQ=255)
                tttAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑‑T‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑TATTTg                                                                                                               >  2:5141557/1‑128 (MQ=255)
                   aaattaaTTTTTTAAAAAGCATATGTTTTATTTTTTTTTTTTTAATTATAAATATTACAACTGTTTTAAATTTTTTTTTTTT‑GG‑‑T‑‑‑TTGTT‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTg                                                                                                               <  2:6751886/122‑1 (MQ=255)
                   aaaGCCATTTGTAAAAAAGCCTATGTTATAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑TT‑‑‑TT‑TTTTTTTTTTATTT‑TGT‑‑‑A‑‑AAAAA‑AAAA‑TGAA‑Gtttt                                                                                                                >  1:4732121/1‑128 (MQ=255)
                    aactcATTTGTAAAAAATCTTATTTTATAGGCTTTTTTTTATAATTATAAAAATTATAACGCTTTCAAATTGTATTTTTTT‑GG‑‑T‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTg                                                                                                               <  2:5194902/124‑1 (MQ=255)
                      tctaTTTTTAAAAAATCATATTTTGTAGGTTTTTTTTTATAATTATAAAAATTAAAACGCTTTAAAATTGTTTTTTTTT‑GG‑‑G‑‑‑TTGTTTTTT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTgg                                                                                                              <  2:593936/125‑1 (MQ=255)
                       ccATTTGTAAAAAATCCAATGTTCTAGGCTTTTTATTTTACTTATAAACATTACAAAGCTTTCAAATTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCa                                                                                                          <  1:5638931/128‑1 (MQ=255)
                        cATTTTTAAAAAATCCTTTTTTTTTTGTTTTTTATTATAATTATCAAAATTACAACTCTTTCAAAGTTTATTTTTTA‑GG‑‑CTTTTTT‑‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATc                                                                                                           <  1:5215482/128‑1 (MQ=255)
                           ttGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAT‑GTAA‑TAtttttttaaac                                                                                                        >  1:1146584/1‑120 (MQ=255)
                             gTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑TTTA‑TAttttgtttcacga                                                                                                      >  1:1654722/1‑118 (MQ=255)
                              tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑TTTA‑GATTTTGATGAAcaca                                                                                                     >  1:768899/1‑125 (MQ=255)
                               aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑T‑‑AAAAA‑AAAA‑GTAA‑GATTTTGATTAAAC‑aaa                                                                                                   >  1:6792262/1‑128 (MQ=255)
                                aaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACt                                                                                                >  1:5330748/1‑128 (MQ=255)
                                 aaaatcaaaTGTTTTATGATTTTTTTTATAATTATAAAAATTAAAAATATTTAAAATTTTTTTTTTTA‑TG‑‑C‑‑‑TTT‑‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACtat                                                                                              <  1:430908/120‑1 (MQ=255)
                                     tcattttttCTTGGGTTTTTATTAAACTTATAAACATTACAACGCTTTCAATGTTTTTTTTTTA‑GG‑‑CTG‑TTT‑‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GTTTTGGTTGATCC‑AAATCttact                                                                                            <  2:634362/121‑5 (MQ=255)
                                         attttttattttttttATTATAATTATAAAAATTAAAAATCTTTAAAATTTTTTTTTTTA‑TGATT‑‑‑TTT‑‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACTATATCaaa                                                                                        <  1:6675037/117‑1 (MQ=255)
                                          tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTTTTAA‑‑AAAAT‑AAAA‑TTAA‑TAATTTGATAAAAA‑AAAAATATATaaaa                                                                                        >  1:5049496/1‑128 (MQ=255)
                                          gaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑ATAA‑AATTTTTATAAAAA‑AAAAATATATaaaa                                                                                        >  2:2488310/6‑128 (MQ=255)
                                            ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑AATTTTTATAAACC‑AAAAAAATATaaaaaa                                                                                      >  2:6699984/1‑128 (MQ=255)
                                             tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAA‑AAAA‑TTTA‑TATTTGTATAAAAC‑AAAAATATATAaaaaaa                                                                                     >  1:2080810/1‑128 (MQ=255)
                                             catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAA‑AAAA‑TTAA‑GATTTGTAATAACC‑AAAACAATAATaaaaaa                                                                                     >  1:1455328/3‑128 (MQ=255)
                                              cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑TTTTTTTATAAACC‑AAAAATATATaaaaaaaa                                                                                    >  1:2617060/1‑128 (MQ=255)
                                              cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTA‑GG‑‑A‑‑‑AAG‑‑‑‑TT‑‑‑TTATTTTTTTT‑‑‑TTTATTT‑‑‑A‑‑AAAAA‑AAAA‑ATTA‑AATTTTGAAGAACA‑AAAAATATATaaaaaaaaat                                                                                  >  1:6112122/1‑126 (MQ=255)
                                               tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAA‑AAAA‑TTAA‑AATTTGGTTCAACA‑AAAAAAATATCaaaaaaaa                                                                                   >  2:2142420/1‑127 (MQ=255)
                                                gttttttttATTA‑ATTTAT‑AAAATTATAACTCTTTAAAATTGTTTTTTTTATGG‑‑T‑‑‑TTTTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACTATATCAAAAAAAT‑Ta                                                                                <  2:5838994/124‑1 (MQ=255)
                                                  gCTTTTTATTTTTATTTTTAAAATTACAACGTTTTATAAGTGTATTTTTTT‑GGGTT‑‑‑TTT‑‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACTATATCAAAAAAAT‑Taaa                                                                              <  2:5737656/128‑1 (MQ=255)
                                                   cTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑T‑‑AAAAA‑AAAA‑GAAA‑CATTT‑TTCGAAAC‑AAAACTATAAAAAAAAAAT‑Ttaaa                                                                             >  2:3575656/1‑128 (MQ=255)
                                                    tttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAA‑AAAA‑TTAA‑ATATTGTAAAAAAC‑AAAAAAATATAAAAAAAAT‑Aaaaa                                                                             >  1:4475736/1‑128 (MQ=255)
                                                    tttttATTATACTTATCAACATTACAACGCTATCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑TTTTATT‑TTTTTTTT‑‑‑TTT‑TAT‑‑‑A‑‑AAAATAAAAA‑ATAA‑TATTTGTTAAAACA‑AAAAATTAATGAAAAAAAA‑Taaa                                                                              >  1:5919678/1‑128 (MQ=255)
                                                     ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAA‑AAAA‑TTAA‑TATTTGTATCAACC‑AAAAATATAAAAAAAAAAT‑Taaaaa                                                                            >  1:5835020/1‑128 (MQ=255)
                                                      tttattttatTTTTTAATATTACAACTCTTTAAAAGTGTTTTTTTTT‑GG‑‑CTTTTTT‑‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACTATATCAAAAAAAT‑Taaaaaa                                                                           <  1:704882/128‑1 (MQ=255)
                                                       ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑ATTTTTGTAAAACCAAAAAGTAT‑TAAAAAAAAA‑Taaaaaaa                                                                          >  2:1540414/1‑128 (MQ=255)
                                                       ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAT‑ATAATAATTTGGAAAAAAC‑AAAATAATAtaaaaaaaat‑aaaaaaaa                                                                          >  2:4956657/1‑128 (MQ=255)
                                                        tattatACTTATCAACATTACAACGCTTTC‑‑AGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AATA‑TTAA‑AATTTGGAAAAAAC‑AAAAAAATATAAAAAAAAT‑TTAAAAAAAtat                                                                      >  2:4752119/1‑127 (MQ=255)
                                                          ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑AATTTTTTTAAACA‑AAAAATAATAAAAAAAAAT‑TAAAAAAAAta                                                                       >  1:2324286/1‑128 (MQ=255)
                                                           tataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATACACA‑AAACCTATTTCAAAAATAT‑Taaaaaaataatt                                                                     >  1:1572125/1‑123 (MQ=255)
                                                              aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑TATTTTTATCAAAA‑AAAAATATTTAAAAAAAAT‑TAAAAAAAAtatatt                                                                   >  1:82847/1‑124 (MQ=255)
                                                              aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑TATTTTGATAAACC‑AAAAATATATAAAAAAAAT‑TAAAAAAAAta‑tttta                                                                 >  1:2779717/1‑128 (MQ=255)
                                                               cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑TATTTTGATAAAAA‑AAAAATATATAAAAAAAAT‑TAAAAAAAAtatatta                                                                  >  1:136412/1‑123 (MQ=255)
                                                               cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑ATTAAAAT‑AAAA‑GTAA‑GAATTGGATCAACC‑AAAACTAAATAAAAAAAAT‑TAAAAAAAAta‑tttta                                                                 >  1:2427451/1‑128 (MQ=255)
                                                                   tCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTTTTT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAA‑AAAA‑TTAA‑TATTTTGAACAACC‑AAAAATATAAAAAAAAAAT‑TAAAAAAAAaa‑ttttattt                                                              >  1:6063841/1‑128 (MQ=255)
                                                                       cATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTTTTT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑AATTTTTAAAAACA‑AAAAATATATTAAAAAAAT‑TAAAAAAAAtattattttatttt                                                           >  1:2956880/1‑116 (MQ=255)
                                                                         ttACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑GATTTGGATCACCC‑AAAAATATA‑AAAAAAAAT‑TTAAAAAAATATGTTAAGTTTAGttac                                                       >  1:6539371/1‑126 (MQ=255)
                                                                         ttACAACGCTTTCAAAGTGTATTTTATA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑TATTTGGTTCAACC‑AAAAC‑ATAATAAATAAATATAAATAAAAtt‑gttttgttttgttga                                                       >  2:2612966/1‑121 (MQ=255)
                                                                          tACACCGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTTTTT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑ATAA‑GATTTTTATAAACA‑AACTATATAAAAAAAAAAT‑TAAAAAAATTA‑TTTTATTTAAtttta                                                       >  1:4112747/1‑127 (MQ=255)
                                                                          tACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑TTTTTGGATAAACA‑AAAACTATATCAAAAAAAT‑TAAAAAAAATT‑TTTTAGTTTATTTTaaa                                                     >  1:3088587/1‑128 (MQ=255)
                                                                            cAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTTTTT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑T‑‑AAAAT‑AAAA‑TTAA‑ATTTTTGTTAAAAC‑AAAAAAATATAAAAAAAAT‑TAAAAAAAAAA‑ATTTATTTGAGTTTaaa                                                     >  1:5561171/1‑128 (MQ=255)
                                                                              aCGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑TATTTGGATCAACC‑AAAACTTTATAAAAAAAAT‑TAAAAAAAAAA‑TTTTATTTAATTTTAAAAta                                                  >  1:5262960/1‑127 (MQ=255)
                                                                               cGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTTTTT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAA‑AAAA‑TTAA‑TTTTTGGAAAAACC‑AAACCAATATAAAAAAAAT‑TAAAAAAAAAA‑TTTTATTTGATTTACAAAtg                                                  >  1:3452393/1‑127 (MQ=255)
                                                                                gCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAA‑AAAA‑TTTA‑TATTTTTATAAACA‑AAAAATATATAAAAAAAAT‑TAAAAAAAATA‑TTTTATTTGATTTTCAAATATg                                                >  1:6185252/1‑128 (MQ=255)
                                                                                 cTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑TATTTGGTAAAAAC‑AAAACTATTTAAAAAAAAT‑TAAAAAAATTA‑TTTTATTTGAGTTTAAAATATga                                               >  1:4192709/1‑127 (MQ=255)
                                                                                  tttCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑TATTTGGTTAAACC‑AAAACTATAAAAAAAAAAT‑TAAAAAAAATA‑TTTTATTTTAGTTTAAAAACAGCa                                              >  1:3923118/1‑128 (MQ=255)
                                                                                   ttCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAA‑AAAA‑TAAA‑TATTTGTAAAAAAC‑AAAAATTTTTAAAAAAAAT‑TAAAAAAAATA‑TTTTATTTTTGtttaatataagaaa                                             >  1:3602294/1‑117 (MQ=255)
                                                                                   ttCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑TATTTTAATAAACA‑AAAACTATATAAAAAAAAT‑TAAAAAAAAAA‑TTTTATTTTAATTTAAAATATACaaata                                          >  1:5381132/1‑128 (MQ=255)
                                                                                    taaaaTTGTATTTTTTA‑GG‑‑T‑‑‑TTGTT‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCatat                                           <  1:6262153/126‑1 (MQ=255)
                                                                                    tCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAA‑AAAATTTAA‑TATTTGGATAAACA‑AAAAAAAAAAAAAAAAAAT‑AAAAAAAAATT‑TTTTATTTGATTTTaaaaaaagaatat                                           >  2:1060333/1‑119 (MQ=255)
                                                                                     taaattttATTTTTTA‑TG‑‑A‑‑‑TTG‑‑‑‑‑T‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATAAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAg                                       <  1:5141557/121‑1 (MQ=255)
                                                                                     cAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑GATTTGGATAAACC‑AAAACTATATAAAAAAAAT‑TAAAAAAAATA‑TTTTATTTTATTTTCAAATATGAAtatata                                        >  1:5752906/1‑128 (MQ=255)
                                                                                          tgtATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAA‑AAAA‑GTTA‑TATTTTGATAAACA‑AAAAATATAAAAAAAAAAT‑TTAAAAAAATT‑TTTTATTTTATTTTCTAAAAAGAAtatatatt                                      >  1:2249314/1‑126 (MQ=255)
                                                                                           gtATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑GATTTGGATAAAAC‑AAAAATATATAAAAAAAAA‑TAAAAAAAATA‑TTTTAGTTTTTTTTAAAATATGAAAATATATTa                                     >  1:4622456/1‑128 (MQ=255)
                                                                                           gtATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAA‑AAAA‑TTAA‑TATTTGGAAAACCC‑AAAACAATATAAAAAAAAA‑TAAAAAAAATA‑TTTTTATTGATTAAAAAAACTTAATATATAgaa                                     >  1:4958908/1‑126 (MQ=255)
                                                                                            tATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑GATTTGGATAAACC‑AAAAAAATATAAAAAAAAT‑TAAAAAAAATA‑TTTTAGTTGATTTTAAAAAATTAATATAAAGTAc                                    >  2:5272860/1‑128 (MQ=255)
                                                                                              ttttttt‑tG‑‑T‑‑‑TTT‑‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAgg                               <  2:1635994/128‑1 (MQ=255)
                                                                                                ttttA‑GG‑‑C‑‑‑TTGTTT‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TTT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑TATTTTGATCAACC‑AAAAATATATAAAAAAAAT‑TAAAAAAAATT‑TTTTTTTTTAGTTACAAATATTAatatattttaaaaat                                >  1:3277622/1‑119 (MQ=255)
                                                                                                          ttttgtttttttt‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGaa                             <  2:2267054/117‑1 (MQ=255)
                                                                                                             tttttttttt‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAATT‑TAAA‑GTAA‑GATTTGGATAATAC‑AAAACTATATCAAATAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  2:3715794/120‑1 (MQ=255)
                                                                                                             tttttttttt‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  2:6575906/120‑1 (MQ=255)
                                                                                                              ttttttttt‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑T‑‑AATAT‑TAAA‑TTAA‑TATTTTGATAAAAC‑AATAATATATCAAAAATAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                         <  2:2998207/121‑1 (MQ=255)
                                                                                                              ttttttttt‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑AATTT‑AATA‑GTAA‑TTTTTGTTTAAATT‑TAAATTATATAATTTTTAT‑TATAATAAATA‑GTTTAGTTTAGTTTAAAATATGAATATTTAGTACATAGTAATTTa                         <  2:4014678/121‑1 (MQ=255)
                                                                                                              ttttttttt‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGTATAAAAA‑AAAATTATATAAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTa                         <  2:4226516/121‑1 (MQ=255)
                                                                                                              tttgttttt‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTTGATCAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                         <  2:4432671/121‑1 (MQ=255)
                                                                                                               tttttttt‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  2:1701513/122‑1 (MQ=255)
                                                                                                                ttttttt‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATg                       <  2:6460318/123‑1 (MQ=255)
                                                                                                                ttttttt‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATg                       <  2:1880426/123‑1 (MQ=255)
                                                                                                                 tttgttttatt‑tttttttt‑‑‑ttt‑tG‑‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATAAACC‑AAAATTATATCTATAAAAT‑TAAATAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  2:3467747/119‑1 (MQ=255)
                                                                                                                  ttttt‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACTATATCTAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt                     <  1:6480341/125‑1 (MQ=255)
                                                                                                                   tttt‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAATT‑AAAA‑GTAA‑GTTTTGGATCAACC‑AAAAATATTAAAAAAAATT‑TAAAAAAATTA‑TTTTATTTTTTTTTAAAATATGCATATATTGTAAAAAGAAATTATTGATa                    >  1:1930738/3‑128 (MQ=255)
                                                                                                                    ttt‑‑‑tt‑tttttttt‑‑‑ttt‑ttt‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GTTTTGGATCAACC‑AAAAATATATAAAAAAAAT‑TAAAAAAAATA‑TTTTATTTGTGTTTCAAATATTCATATTTATTAAAAAGGAATTTaatatta                   >  1:1012791/2‑122 (MQ=255)
                                                                                                                    ttt‑‑‑tt‑tttttttt‑‑‑ttt‑ttt‑‑‑A‑‑AAAAA‑AAAA‑GTAA‑GATTTGGATAAACC‑AAAAATATATAAAAAAAAT‑TAAAAAAAATA‑TTTTTTTTGATTTTAAAAAATTAATAAATATTAAAAAGAAATTTATtataa                   >  1:90367/2‑127 (MQ=255)
                                                                                                                    ttt‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑ATTAT‑ATTA‑GTAA‑TTTTTGGATTTTTT‑AAAAATATATCAATATAAT‑TAAAAAAAATT‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                   <  2:2798103/127‑1 (MQ=255)
                                                                                                                    ttt‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATAAACC‑AAAAATATATAAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                   <  2:3186406/127‑1 (MQ=255)
                                                                                                                      t‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAT‑AAAT‑GTAA‑GATTTGGATCAAGC‑ATAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  2:6180145/128‑1 (MQ=255)
                                                                                                                      t‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGTATCAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAATGAATTTATGATAGaa                 <  1:6347433/128‑1 (MQ=255)
                                                                                                                      t‑‑‑tt‑tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATAATCA‑AAAATTATATAAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  2:2342887/128‑1 (MQ=255)
                                                                                                                             tttttttt‑‑‑ttt‑ttt‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑GATTTTGATCAACA‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  2:5328460/128‑1 (MQ=255)
                                                                                                                             tttttttt‑‑‑ttt‑tGT‑‑‑T‑‑ATATT‑AAAA‑GTAA‑GATTTGGATCATCC‑AAAAATATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  1:547939/128‑1 (MQ=255)
                                                                                                                             tttttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  2:5580268/128‑1 (MQ=255)
                                                                                                                               tttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATAAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa            <  1:1717792/128‑1 (MQ=255)
                                                                                                                                ttttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATAAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAAt           <  2:2014096/128‑1 (MQ=255)
                                                                                                                                 tttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAA‑AAAA‑GAAA‑GATTTGGATCAACC‑AAAAAAATATCAAAAAAAT‑TAAAAAAAAAA‑GTTTATTTGATTTTAAAATAGACATATTTAGTACAAAGGAATTTATTATATAAAAAAATg          >  2:5651794/1‑128 (MQ=255)
                                                                                                                                  ttt‑‑‑ttt‑tGT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑GATTTGGATCAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg         <  2:6066998/128‑1 (MQ=255)
                                                                                                                                    t‑‑‑ttt‑ttT‑‑‑A‑‑AAAAT‑AAAA‑TTAA‑TATTTGGATAAACC‑AAAACTATATAAAAAAAAT‑TAAAAAAAATA‑TTTTTTTTGTGTTTAAAAAATGAATATAAATTAAAAATAATTTTTTGAAATaaaaaaaatgtt       >  2:762094/1‑123 (MQ=255)
                                                                                                                                        ttt‑tGT‑‑‑A‑‑ATAAT‑AAAA‑GTAA‑GATTTGGATCTACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt      <  1:1784682/128‑1 (MQ=255)
                                                                                                                                        ttt‑tGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGTATAAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt      <  2:541672/128‑1 (MQ=255)
                                                                                                                                          t‑tGT‑‑‑A‑‑AAAAT‑AATA‑GTAA‑TATTTTGATCAAAT‑AAAACTATATAAAAAAAAT‑TAATAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat    <  2:389670/128‑2 (MQ=255)
                                                                                                                                             gT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatca  <  2:833594/128‑4 (MQ=255)
                                                                                                                                             |                                                                                                                                          
AAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑TT‑‑‑TT‑TTTTTTTT‑‑‑TTT‑TGT‑‑‑A‑‑AAAAT‑AAAA‑GTAA‑GATTTGGATCAACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATA‑GTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203789‑204039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑