Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816311,1500A.68.4% 1805.8 / inf 1304intergenic (‑73/‑241)JCVSYN2_01300/JCVSYN2_01305hypothetical protein/30S ribosomal protein S21
Reads supporting (aligned to +/- strand):  ref base A (281/128);  new base . (472/415);  total (753/551)
Fisher's exact test for biased strand distribution p-value = 1.29e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.43e-01

Only 100 of 1801 total aligned reads displayed.

TACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAA  >  CP016816/311023‑311277
                                                                                                                                 |                                                                                                                               
      ttGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatata                                                                                                                           >  1:5399069/1‑128 (MQ=255)
      ttGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatata                                                                                                                           >  1:1806888/1‑128 (MQ=255)
      ttGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACAATCAT‑‑tatatata                                                                                                                           >  1:1001654/1‑128 (MQ=255)
         taataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatat                                                                                                                        >  1:2437853/1‑128 (MQ=255)
          aataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatata                                                                                                                       >  1:5697629/1‑128 (MQ=255)
          aataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatata                                                                                                                       >  2:5600066/1‑128 (MQ=255)
          aataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatata                                                                                                                       >  2:4155246/1‑128 (MQ=255)
          aataaCTAATAAAAATTAACTTAAAATTGTAATTAAATTTTTAATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATACTATTCAAAACATATATAACATACATTCAT‑‑tatatatatata                                                                                                                       <  2:6091203/128‑1 (MQ=255)
           ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATACAT‑‑tatatatatatat                                                                                                                      >  1:2307991/1‑128 (MQ=255)
           ataaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACAGACATTCAT‑‑tatatatatattt                                                                                                                      >  2:2936530/1‑126 (MQ=255)
            tatcTAATCAAAATGAACTTATAATTGTAATAAACTTTTTCATTTTACACACCCATTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatata                                                                                                                     <  1:1246715/125‑1 (MQ=255)
            taaCTAATCCAAATGAACTTAAAATTGTAATTATCTTTTTCATTTTACTCTCCCCTTATTAAAAATTAAAATACTTGTTACATACGATTCAAAACATATATAACAAACATTAAT‑‑tatatataaatata                                                                                                                     >  2:3180485/1‑128 (MQ=255)
             aaCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatataaatat                                                                                                                    >  1:2206235/1‑128 (MQ=255)
              aCTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatata                                                                                                                   >  2:1275468/1‑128 (MQ=255)
               cTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatat                                                                                                                  >  2:2763202/1‑128 (MQ=255)
                tAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatataat                                                                                                                 <  2:6383439/128‑3 (MQ=255)
                tAATCCAAATGAACTAAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatataaa                                                                                                                 >  1:6608322/1‑126 (MQ=255)
                     cAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatat                                                                                                            <  1:3221640/128‑1 (MQ=255)
                     cAAAAGAAATTAAAATAGTTATTAAATTTATCATTTTACACACAACTTATTATAAAATAATATAATTGTTACATACGATTCAAAAAATATATATCATACATTCAT‑‑tatatatatatatatatatatat                                                                                                            <  1:3412788/128‑1 (MQ=255)
                      aaaTGAACTTAAAATTTTAATTAAATTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatata                                                                                                           <  2:1601415/128‑1 (MQ=255)
                       aaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatatat                                                                                                          >  2:3867272/1‑128 (MQ=255)
                        aTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatatatg                                                                                                         >  2:1742176/1‑127 (MQ=255)
                        aTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataat                                                                                                         >  1:1170816/1‑126 (MQ=255)
                        aTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatataatat                                                                                                         >  2:4538690/1‑124 (MQ=255)
                        aTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTAACATACGATTCAAAACATATAAAACAGACATTCAT‑‑tatatatatatatatatatatatata                                                                                                         >  2:3717925/1‑128 (MQ=255)
                         tGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATaa                                                                                                        >  1:3098535/1‑128 (MQ=255)
                            aCTTAAAATTGTAATTAACTTTTTCATTTTGCACACCCCTTATTAAAAAATAAAATACTTGTTAAATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatataatgcaata                                                                                                     <  1:4809062/128‑9 (MQ=255)
                            aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatattgcaata                                                                                                     >  1:6796800/1‑121 (MQ=255)
                            aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatattattcaa                                                                                                     >  1:2081315/1‑121 (MQ=255)
                            aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatataattcaata                                                                                                     >  1:4399928/1‑120 (MQ=255)
                            aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatataatgcaata                                                                                                     >  1:5173112/1‑120 (MQ=255)
                              ttAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAAttata                                                                                                   >  2:3582377/1‑124 (MQ=255)
                               tAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTAAATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAatat                                                                                                <  1:783250/128‑1 (MQ=255)
                               tAAAATTGTAATTAAATGTTTCATTTTACACACCACTTATTAAAAAATAAAATAGTTGTTAAATACTATTAAAAACATATATAACATACATTGAT‑‑‑‑TATATATATATATATATATATATAATGCAatat                                                                                                <  2:194565/128‑1 (MQ=255)
                                 aaatttttaataaatttttaatTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGt                                                                                              <  2:1170816/128‑1 (MQ=255)
                                 aaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataattcaatatat                                                                                                >  1:5039201/1‑117 (MQ=255)
                                 aaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataattaaatattt                                                                                                >  1:1950157/1‑117 (MQ=255)
                                 aaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATA‑‑GCAATATGt                                                                                              >  2:3043836/1‑128 (MQ=255)
                                  aaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTa                                                                                             >  2:5433234/1‑128 (MQ=255)
                                   aTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATTTaa                                                                                            >  1:4528283/1‑128 (MQ=255)
                                    ttGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATATGTaat                                                                                           >  1:4653862/1‑127 (MQ=255)
                                     ttttattatatttttCATTTTAAACACCCCTTATTAAAAAATAAAATAATTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAAt                                                                                          <  2:2670235/118‑1 (MQ=255)
                                     tGTAATTAACATTTTAATTTTACACACACATTATTAAAAAATAAAATATTTGTTACATAAGATTAAAAAAATATATAACATACATTCATTATATATATATATATATATATATATATAATGCAATATGt                                                                                              <  2:1831274/128‑1 (MQ=255)
                                       tAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATAAAATATCTAAATGa                                                                                        >  1:2798273/1‑128 (MQ=255)
                                           tAACTTTTTCATATTACACACCCCTTATTAAAAAATAAAATAATAGTTAAATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAatat                                                                                  <  2:5038721/128‑1 (MQ=255)
                                             aCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCTATATGTAAATGAAAatat                                                                                  >  2:5922908/1‑128 (MQ=255)
                                             aCTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAATGAAAatat                                                                                  >  2:428750/1‑128 (MQ=255)
                                                ttttCATTTTAAACAACAATTATTAAAAAATAAAATATTTGTTACATAAGATTAAAAAAATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGt                                                                               <  1:3514220/128‑1 (MQ=255)
                                                  ttCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATAAAATGCAATATTAAAATGAAAatattttat                                                                             >  2:2552755/1‑123 (MQ=255)
                                                     aTTTTACACACCACTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataat                                                                          <  1:2697891/128‑1 (MQ=255)
                                                      ttttACACACAACTTATTAAATAATAAAATAATTTTTACATACTATTCAAAAAATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataata                                                                         <  1:6390887/128‑1 (MQ=255)
                                                       aatACACACACCTAATTAAAAAATATAATACTTGTTAGATAAGTTTAAAAAAATATATATCATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAg                                                                        <  2:4945082/126‑1 (MQ=255)
                                                        ttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATTAAACAATATATAAAAGAAAATATTATataatatc                                                                       >  1:6084848/1‑126 (MQ=255)
                                                          acacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATA‑‑GAAATATATAAAAGAAAATATTTAataatataaa                                                                     >  1:1400277/1‑124 (MQ=255)
                                                           tacaaaccTTATTTAAAAATAAAATAATTTTTTCATACTATTCAAAAAATATATATCATAAATTAAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCa                                                                      <  2:671161/122‑1 (MQ=37)
                                                             cacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATAAAAA‑‑‑AATATATAAATTAAAATATATTataatataaaaatat                                                                >  2:2413643/1‑119 (MQ=255)
                                                             cacCCCTTATTAAAAAATAAAATACATGTTACATACGATTCAAAACATATATAACATACAATCAT‑‑TATATATATATATATATATAAATAAAGCAATATAAAAATGAATATATGCTATAATAACAcccc                                                                  >  2:5664918/1‑127 (MQ=255)
                                                               ccccTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGAAACCGtt                                                                >  2:5230347/1‑128 (MQ=255)
                                                                 ccTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAAATAAATATGTAAAATAAAATATTATatactataaccagttta                                                              >  1:6228178/1‑117 (MQ=255)
                                                                 aattattaAAAAATAAAATAATTTTTAAATAAGATTCAAAACATATATAACATACATTAAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTtata                                                            <  1:6690522/126‑1 (MQ=255)
                                                                  cTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaa                                                           >  2:6206521/1‑128 (MQ=255)
                                                                   ttattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTCAATATGTAAATGAATATATGTTATAATAGAAACATTTtata                                                            >  1:58469/1‑128 (MQ=255)
                                                                    tattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCATTATATATATATATATATATATATATATAAATAAATATTTAAAAGAAAATATTTTATAATATCAAACAttt                                                               >  2:90940/1‑128 (MQ=255)
                                                                    tattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTCTATATGAAAATAAAAATATTTTATAATAGCaaaattatataa                                                           >  2:1484152/1‑118 (MQ=255)
                                                                    tattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTAAATATTTAAATAAAAATATGATATAATATAAAACTTTTATaa                                                           >  1:3947095/1‑128 (MQ=255)
                                                                     attaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGt                                                        <  2:5309451/128‑1 (MQ=255)
                                                                         aaaaaTAAAATATTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaa                                                    <  2:81197/128‑1 (MQ=255)
                                                                          aaaataaaatACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATTAAAAAGAAAATATTGTATAATAGCAACCGATTATAAAGTata                                                     >  2:1013477/1‑126 (MQ=255)
                                                                            aataaaataaTTTTTAAATAAGATTCAAAACATATATAAAATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaa                                                   <  1:2553330/128‑1 (MQ=255)
                                                                            aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATTGTATAATATCAACCGTTTATAAAGTaaaaa                                                   >  1:919705/1‑128 (MQ=255)
                                                                            aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTaaaaa                                                   >  1:4073151/1‑128 (MQ=255)
                                                                            aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTTAATGAAAATATGGTATAATACAAACCTTATATAAAGTaaaaaaa                                                 >  2:4394927/1‑128 (MQ=255)
                                                                              taaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAAAAAAAAATATATAAATAAAAATATTATAAAATAGACACAGTATATAATATaaaaa                                                   >  2:3322658/1‑128 (MQ=255)
                                                                              taaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATATGTATATGAATATATGATATAAAAGCAACCGATTATTATATaaaaaaa                                                 >  2:6844764/1‑128 (MQ=255)
                                                                                     cTTGTTACATACTATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTaaa                                          <  2:4024231/128‑1 (MQ=255)
                                                                                     cTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAAATATATATTTAAAAGAAAATATTTTATAATAGCAAAATTTTATAAAGTAAAAAAataatata                                          >  1:5580981/1‑126 (MQ=255)
                                                                                     cTTGTTACATACGATTCAAAACATATATAACATACATTAAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                        <  2:5130766/128‑1 (MQ=255)
                                                                                      ttGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAat                                         <  1:4903059/128‑1 (MQ=255)
                                                                                       ttttaaattagATTAAAAAAAAATATAAAATAAATTCAT‑‑TATATATATTATTATAAATATATAATTCAATATGTAAATGAAAATATGGTATAAAAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                        <  2:5504043/118‑1 (MQ=255)
                                                                                       tGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAATTGAATATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                        >  2:5796349/1‑128 (MQ=255)
                                                                                       tGTTACATACGATTCAAAACATATATAAAATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                        <  2:4828724/128‑1 (MQ=255)
                                                                                        gTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAatat                                       <  1:4203195/128‑1 (MQ=255)
                                                                                             aTACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATTATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtactaa                                  >  2:2218000/1‑127 (MQ=255)
                                                                                                 gATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATATCAACCTTTTATAAAGTAAAAAAATAGTAAATATACTAattatta                            >  1:1477244/1‑127 (MQ=255)
                                                                                                   ttCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAATTAAAAAAATAGTAAATATACTACTTATTTACta                        >  1:5938881/1‑128 (MQ=255)
                                                                                                        aaCATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGAAATATGTAAATGAAAATATGTTATAATAGCAACAGTTTATATAGTAAAAAAATATTAAATATAATAATTATTTACt                         >  1:6513354/1‑128 (MQ=38)
                                                                                                        aaCATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaa                       <  1:2985400/128‑1 (MQ=255)
                                                                                                         aCATATATAACATATATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaat                      <  1:5291335/128‑1 (MQ=255)
                                                                                                         aCATATATAACATACATTCAT‑‑TATATATATATATATATATA‑‑‑‑‑AAGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATaaaa                  >  1:366540/1‑128 (MQ=255)
                                                                                                          cATATATAACATACATTCAT‑‑TATATATATATATATATATATATAAAGCAATATGTAAATGAAAATATTGTATAATAGCAACAGTTTAAAAAGTAAAAAAATTGTAAATAAACTACTTATTTACtaata                     >  2:2055541/1‑128 (MQ=255)
                                                                                                            tatataACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATaaa                   >  1:1704927/1‑128 (MQ=255)
                                                                                                               ataACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATTAAAATATTGTATAATAGCAACCGTTTATAAATTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATc                >  2:659265/1‑128 (MQ=255)
                                                                                                                  acatacatTTAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt               <  2:1369861/128‑1 (MQ=255)
                                                                                                                  acatacatTCAT‑‑TATATATATATATATATATATATATAAAGAAATATTTATATGAAAATATGGTATAATATCAACCTTTTATAAATTAAAAAAATAGTAAATATAATAATTAATTACTAATAAAATCt               >  2:3435539/1‑128 (MQ=37)
                                                                                                                  acatacatTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAATGAATATTTGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTTCTTATTTACTAATAAAATCTAt             >  2:4667587/1‑128 (MQ=255)
                                                                                                                   catacatTCATTATATATATATATATATATATATATATAATTCAATATGTAAATGAAAATATGTTATAATAGCAACATTTTATAAATTAAAAAAATAATAAATATACTAATTATTTAATAATAAAATc                >  1:1593160/1‑128 (MQ=255)
                                                                                                                    atacatTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAt             <  1:4306507/128‑1 (MQ=255)
                                                                                                                     tacatTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGTTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTATATATACTACTTTTTTACTAATAAAATCTAtttt          >  2:6498740/1‑128 (MQ=255)
                                                                                                                     tacatTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGTTATAATAGCAACCGTTTATAAAGTAAAAAAATAGAAAATATAATACTTATTTAATAATAAAATCTAtttt          >  1:3792171/1‑128 (MQ=255)
                                                                                                                      acatTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGTTATAATATCAACCGTTTATAAATTAAAAAAATAGTAATTATAATACTTATTTACTAATAAAATCTAttttt         >  1:2900647/1‑128 (MQ=255)
                                                                                                                                 |                                                                                                                               
TACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAA  >  CP016816/311023‑311277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: