New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 76896 =2169 (0.850)362 (0.160) 134/226 12.4 16.4% intergenic (‑145/+40) JCVSYN2_00300/JCVSYN2_00305 UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
?CP016816 = 76892 1753 (0.760)intergenic (‑141/+44) JCVSYN2_00300/JCVSYN2_00305 UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 2345 total aligned reads displayed.

AAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTT  >  CP016816/76765‑77019
                                                                                                                                     |                                                                                                                                 
 aaTTTATATATATTAGTGTACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑t                                                                                                                                <  2:622554/128‑1 (MQ=255)
 aaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑t                                                                                                                                >  1:4163732/1‑128 (MQ=255)
   tttATATATATTAGTTAACTTAAGGATGTATAATACAAATTAATAATAACTTTACAAACCAAATTCCCCTTTAAATTAAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑ttt                                                                                                                              <  1:2141248/128‑1 (MQ=255)
   tttATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑ttt                                                                                                                              >  1:4932670/1‑128 (MQ=255)
     ttaatatatTATTGTACTTAATGATGTTTAATACAAATTAAAAATAACTGTACAACCCAAATTCCCCTTTAAATTAAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑ttttt                                                                                                                            <  1:4287969/125‑1 (MQ=255)
        atatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑tttttttt                                                                                                                         <  2:885910/128‑1 (MQ=255)
          atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑tttttttttt                                                                                                                       >  1:4639455/1‑128 (MQ=255)
          atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTAAAA‑‑C‑‑tttttttttt                                                                                                                       >  2:4566780/1‑128 (MQ=255)
          atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTATAAAGAAAAATATTACAA‑‑C‑‑tttttttttt                                                                                                                       >  1:3443232/1‑128 (MQ=255)
          atatTAGTGAAATTAATGATTTATAAAAAAAAATAAAAAAAAATTTACAACCCAAAATCCCCTTTAAATTCAAATAACATTATATAAATATAAATTTTTTAAACAAAAATATTACAA‑‑C‑‑tttttttttt                                                                                                                       <  2:5125463/128‑1 (MQ=255)
            atTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑tttttttttttt                                                                                                                     >  2:358044/1‑128 (MQ=255)
             ttAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCACTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑ttttttttttttt                                                                                                                    >  1:1538565/1‑128 (MQ=255)
             ttAGTGAACTTAAGGATGTATAATACAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑tttttttttttttt                                                                                                                   >  2:4305683/1‑128 (MQ=255)
                 tcaaattAACGATTTATAAAAAAAATTAATAATAACATTACAACCCAAATTACCCTTTAAATTCAAATAACATTATATAAATATAAATTTTTTAAATAAAAATATTACAA‑‑C‑‑ttttttttttttttttt                                                                                                                <  2:3008932/123‑2 (MQ=255)
                    aCTTAATTATGTATAAAAAAAATTAAAAATAACTGTAAAACCCAAATTACCCTTTAAATTAAAATAAAATTAAATAAATATAAATTTTTTAAATAAAAATATTACAA‑‑A‑‑TTTTTTTTTTTTTTTTGGaa                                                                                                             <  2:1243943/128‑1 (MQ=255)
                    aCTTAAGGATGTATAATACAAATTAAAAAAAACTGTACAAACCAAATTCCACTTTAAATTCAAATAACATTATATAAATATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑ttttttttttttttggaact                                                                                                             <  1:3662644/128‑7 (MQ=255)
                     cTTAAGGAAGTATAATACAAATTAATAAAAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTAAATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACt                                                                                                           <  1:4037640/128‑1 (MQ=255)
                     attaagttagTAAAATATAAAATAATAATAACTTTAAAAACAAAATTAACCTTTAAATTAAAATAACATTATATTAATTTAAATTTTTTAAATTAAAATTTTAAAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACt                                                                                                           <  1:5452845/119‑1 (MQ=255)
                       tAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAAATAAAATAACATTAAATAAATATAAATTTTTTAAACAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTaa                                                                                                         <  1:4555467/128‑1 (MQ=255)
                        aaGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑tttttttttttttttttaaaaaaa                                                                                                         >  1:1112371/1‑120 (MQ=255)
                         aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑ttttttttttttttttaaataacat                                                                                                        >  2:4477351/1‑119 (MQ=255)
                         aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGAACTAACa                                                                                                       >  2:806132/1‑128 (MQ=255)
                          ggATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACat                                                                                                      >  2:4893238/1‑128 (MQ=255)
                              ttattatACAAATTAATTATAACTTTAAAAACAAAATTCCCCTTTAAAATCAATTAACAATTTAAAAATATAAATTTTTTAAATAAAAATATTAAA‑‑A‑‑ATTTTTTTTTTTTTTTGGAACTAACATATaa                                                                                                  <  2:2550437/127‑1 (MQ=255)
                              gTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTAAAATAAAATATaa                                                                                                  >  1:2524337/1‑128 (MQ=255)
                              gTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGTAACTAACATATaa                                                                                                  >  1:326893/1‑128 (MQ=255)
                               tataATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTTAACTAAAATATAAt                                                                                                 >  1:854134/1‑128 (MQ=255)
                                ataataCAAATTAATAATAACTGTACAACACAAATTCACCTTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAAGAAAAATATTAAAA‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAAttt                                                                                               <  2:1457884/128‑1 (MQ=255)
                                 taataaAAATTAAAAATAATATTACAACCAAAATTCCCCATTAAATTAAAATAACATTATAAAAATATAAATTTTTTAAATAAAAATATTACAA‑‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAAttt                                                                                               <  1:1624805/128‑1 (MQ=255)
                                 aaataCAAATTAATAAAAACTGAACAACCCAAATTCCCATTTAAATTCAAAAAAAATTATATAAATAAAAATTTTTTAAATAAAAATATTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAAtt                                                                                                <  2:1641993/127‑1 (MQ=255)
                                  aataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTATTTTTTTAACAAACAAATAAttta                                                                                              >  1:2260676/1‑127 (MQ=255)
                                  aataCAAATTAATAAAAAATGTAAAACCAAAATTCCCCTTTAAATTCAAATAAAATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTa                                                                                             <  2:343925/128‑1 (MQ=255)
                                   ataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTTAAAAAAAAAAATAAttta                                                                                              >  1:1003459/1‑127 (MQ=255)
                                   ataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAAAATAAAATTTTa                                                                                             >  2:1951214/1‑128 (MQ=255)
                                   aaaaaaaataaaaataACTTTAAAACCAAAATTACACTTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATTAAA‑‑A‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTa                                                                                             <  2:2737359/124‑1 (MQ=255)
                                    tatcaaTTAAAAAATAATGTACAACAAAAAATACAATTTTAATTAAAATAAAATTTTATTAATTTAATATATTTAAATAAAAATATTACAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTAcc                                                                                           <  1:391244/124‑1 (MQ=255)
                                        aaTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGTAAATAAATTTAATTTTACCCat                                                                                        >  2:2894963/1‑128 (MQ=255)
                                         ataaaaaataaCTGTACAACCCAAATAACCCTTTAAATTCAAAAAACATTATATAAAGATAAATTTTTTAAATAAAAATATTAAAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAat                                                                                        <  1:1346486/122‑1 (MQ=255)
                                         aTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGTAAATAACATAAAATTTTAACAatt                                                                                       >  2:4812135/1‑128 (MQ=255)
                                         aTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTATTTTGGAACTAACTAAAAATATAACCAatt                                                                                       >  2:422064/1‑128 (MQ=255)
                                            aaatataaCTTTAAAACCTAATTTCACTATTAAATTAAAAAAAAATTTATTAAATATAAATTTTTTAAATAAAAAAATTACAA‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAattatga                                                                                   <  1:5320777/124‑3 (MQ=255)
                                             ataataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTGTTTTTTTTGGCACTAACATAATATTATACCAattatt                                                                                    >  1:2949831/1‑128 (MQ=255)
                                             ataataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGTAAATAACAAATAATTTTACAAAttatta                                                                                   >  2:3268313/1‑128 (MQ=255)
                                             ataataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAg                                                                                  >  2:184820/1‑128 (MQ=255)
                                             ataataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑‑‑‑‑TTTTTTTTTTTTGTAAATAAAATATAATTTTACCAACAATTAGaa                                                                                >  2:4049540/1‑128 (MQ=255)
                                             ataaaaaATTTAAAAACCAAATTACCATTTAAATTAAAATAAAATTATATAAAATTAAATTTTTTTAATAAAAATATTAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                                   <  2:5394255/128‑1 (MQ=255)
                                              taataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTATTTTTTTTTTTTGTAAATAACATATAATTTTACCAAttatta                                                                                   >  1:5057619/1‑128 (MQ=255)
                                              taataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACAAAatattat                                                                                  >  1:2345047/1‑127 (MQ=255)
                                              aaataaATTTACAAAACAAATTACCAATTTAATTTAAAATAAATTATATAAATATAAAATTTATAAATAAAAAAATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                                   <  1:2430162/127‑1 (MQ=255)
                                               aataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTT‑‑GAAATAACATATAATTTTACCAATTATTaaaa                                                                                >  1:2827059/1‑128 (MQ=255)
                                               aataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTGGGAAGTAAAATATAATTTACCAatttttttga                                                                                >  2:69100/1‑124 (MQ=255)
                                                  aaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGTAAATAAAATATAATTTTAACAATAATTAAaatt                                                                              >  1:27243/1‑128 (MQ=255)
                                                   tatGTACAACTCAAATTAATATTTAAATTCAAATAACTTTATTTTAATATAAATTTTTTAAATAAAAATTTTACAA‑‑C‑‑‑‑‑‑TTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaa                                                                          <  1:2610978/126‑1 (MQ=255)
                                                     tttACAAACCAAATTACCCTTTAATTTTAAATAACATTATTTAAATATAAATTTTTTAAATATAATTATTAAA‑‑A‑‑ATTTTTTTTATTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttca                                                                           <  1:3182880/126‑1 (MQ=255)
                                                     tGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGCACTAACAAAAAATTTTACAAATTTTTAAaatttac                                                                           >  1:5242525/1‑126 (MQ=255)
                                                     tGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTATTTTTTTTTTTTAAAACTAACATATATTTTTACCTATTATTATattttaa                                                                           >  2:2656629/1‑126 (MQ=255)
                                                             ccAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAAATAACAAATATTTTTACCAATTATTAGaatttaaatttccc                                                                    >  2:5503415/1‑126 (MQ=255)
                                                             ccAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGTAACTAACATATAATTTTACCAATTATTATAATTTAAATTTcaca                                                                   >  2:3805882/1‑128 (MQ=255)
                                                                aaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAACTAAAATATAATTTTACCAATTATTAGAATTAAAATTTAACAGATg                                                               >  1:3554833/1‑128 (MQ=255)
                                                                aaTTCCAATTTAAATTAAAATAACATTTTATAAATATAAATTTTTTAAATAAAAATATTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                                 <  2:4738609/128‑1 (MQ=255)
                                                                aaTTACCCTTTTAATTTAAATAAAATTATTTAAATATAAATTTTTTAAATAAAAATTTTTCAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                                <  1:3044268/128‑1 (MQ=255)
                                                                 aTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATTTAATTTTACCAATTATTAGAATTTAAATTTCACagaaga                                                              >  1:1456639/1‑128 (MQ=255)
                                                                  atacccaTTAAAATTAAATAAAAATTATAAAACATAAAATTTTTAAAAAAAAAATAATAA‑‑A‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGa                                                              <  1:4751562/125‑1 (MQ=255)
                                                                   ttacacTTTTAATTAAAATAACATTTTATAAATATAAATTTTTTAAATAAAAATATTAAAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGa                                                              <  1:3339723/123‑1 (MQ=255)
                                                                   ttaaacTTTATATTAATATAAAATTTTATAAATTATAAATTTTTAAATAAAAATAATAAAAATT‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                                 <  2:3118743/123‑1 (MQ=255)
                                                                      ccatttAAAATAAAATAAAATTATATAAATAAAAAATTTTTAAATTAAAATATTTCAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAt                                                            <  1:1953663/125‑1 (MQ=255)
                                                                        cTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAt                                                        >  1:5153456/1‑128 (MQ=255)
                                                                        attttAATTAAAAAAAAATTTATTAAATAAAAATTTTTTAAATAAAATTATTAAA‑‑T‑‑TTTTTTTTTTTTTTTTGTAAATAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGa                                                         <  2:2176746/127‑1 (MQ=255)
                                                                         tttAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTATAATTTAAATTTCACATATGAATTTAt                                                        >  2:3349452/1‑128 (MQ=255)
                                                                          ttaaattaaaATAAAATTATATTAAGATAAATTTTTTATATAAAAATATTACAA‑‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                                       <  1:1191568/128‑1 (MQ=255)
                                                                           ttaaTTTAAAAAACAATATATAAATATAAATTTTTTAAAGAAAAATATTAAAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                                     <  2:2292732/126‑1 (MQ=255)
                                                                           tAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAAAAAAAATATAATTTTAACAATAATTATAATTAAAATTAAACAGATAAATTTAtt                                                       >  2:5012694/1‑128 (MQ=255)
                                                                           tAAAATCAAATAACATTATATAAAGATAAATTTTTTAAATAAAAAAATTAAAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAttt                                                      <  1:4454121/128‑1 (MQ=255)
                                                                            aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACAAACATTTAATTTTACCAATTATTAGAATTTAAATTTCCCACATGAATTGATttc                                                     >  2:1134210/1‑128 (MQ=255)
                                                                            aaaTTCAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                                     <  1:635000/128‑1 (MQ=255)
                                                                             aaTTTAAAAAACAATATATAAAGATAAAATTTTTAAATAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttct                                                    <  1:709810/128‑1 (MQ=255)
                                                                               ttaaaaTAAAATTATATAAATATAAATTTTTTAAATAAAAATATTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttctt                                                   <  1:5538028/125‑1 (MQ=255)
                                                                               ttCAAAAAAAAATATATAAATTTAAATTTTTTATAGAAAAAAAATAAAAA‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttct                                                    <  2:5322090/128‑1 (MQ=255)
                                                                                    aTAAAATTATATTTATATTAATTTTTTTAATTAAAAATTTTATAA‑‑‑‑TTTTTTTTTTTTTTTTGTACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaata                                             <  1:2050592/128‑1 (MQ=255)
                                                                                      aaCATTTAATAAAGATAAATTTTTTAAATAAAAATATTAAAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTaataat                                           <  2:4141105/128‑1 (MQ=255)
                                                                                      aaCATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAAATAACATATAATTTTACAAATTATTAAAATTTCAATTTAACAGATGAATTGATTAATTATAATAAtt                                          >  2:106910/1‑128 (MQ=255)
                                                                                       aCATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAAAAAATAATTTTACAAATTATTATAATTAAAATTTAAAATATTAATTTATTTCTAATAATAAtt                                          >  1:127413/1‑128 (MQ=255)
                                                                                          ttATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTAACATATTAATTTATTTATTATAATAATTTGt                                       >  2:1332942/1‑128 (MQ=255)
                                                                                            atataAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGTAACTAACATAAAATTTTACCAATTATTAGAATTTCAATTTCCAAGATGAATTGATTTCTTCAAATAATTTGACt                                     >  1:986618/1‑128 (MQ=255)
                                                                                             tataAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTAAAAGATGAATTGATTTCTTATAATAATTTGTCta                                    >  1:1805581/1‑128 (MQ=255)
                                                                                              ataAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACATATGAATTTATTTCTTCTAATAAttttaatat                                   >  1:4373525/1‑122 (MQ=255)
                                                                                               tttaatttttaaTTTTTTAAATAAAAATTTTTAAA‑‑A‑‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtata                                  <  2:3924975/118‑1 (MQ=255)
                                                                                                aaaTATAAATTTTTTAAATAAAAATATTAAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtata                                  <  1:799503/128‑1 (MQ=255)
                                                                                                   ataTAAATTTTTTAAATTAAAATATTTAAA‑‑‑‑ATTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGa                              <  2:2055550/126‑1 (MQ=255)
                                                                                                   aatattaaTTTTTTAAATAAAAATATTAAAA‑‑CTTTTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtat                                   <  1:4837946/122‑1 (MQ=255)
                                                                                                    taTAAATTTTTTTAATAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAg                               <  1:1717992/127‑1 (MQ=255)
                                                                                                             ttttAAATAAAAATATTAAA‑‑A‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttttt                      <  2:3675962/128‑1 (MQ=255)
                                                                                                             ttttAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAAAATTTCAATTTCACAGATGAATTGATTTGTTCTAAAAATTTGTATATATATATGtttttt                      >  2:4661412/1‑128 (MQ=255)
                                                                                                                tAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAAATAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTtat                    >  1:1864206/1‑128 (MQ=255)
                                                                                                                tAAAGAAAAATATTACAA‑‑C‑‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTAATTTCTTCTAATAATTTTTCTATAAAGATGTTTTTtataaa                 >  2:5227713/1‑126 (MQ=255)
                                                                                                                       aaaaTATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATTAAATTTTACCATTTATTAGAATTTAAATTTCACAGATGAATTAATTTATTATAATAATTTTTGTATATTGATGTTTTTTTTATATaa              >  2:242483/1‑128 (MQ=255)
                                                                                                                       aaaaTATTACAA‑‑‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTaaa             <  1:376182/128‑1 (MQ=255)
                                                                                                                        aaaTATTAAAA‑‑C‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAAt            <  2:1559864/128‑1 (MQ=255)
                                                                                                                          ttatTACAA‑‑C‑‑‑‑TTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAg         <  2:4410855/127‑1 (MQ=255)
                                                                                                                            atTACAA‑‑A‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGt        <  2:1746318/128‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                 
AAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATTACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTT  >  CP016816/76765‑77019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.