New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 202486191 (0.070)387 (0.150) 94/252 21.6 64.7% intergenic (+264/‑411) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
?CP016816 202490 = 231 (0.090)intergenic (+268/‑407) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 541 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑A‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202369‑202617
                                                                                                                         |                                                                                                                                    
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAA‑AATCCCC‑‑ttaaa‑a‑att‑a‑aaaa                                                                                                                        >  2:1979846/1‑128 (MQ=255)
 ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTATATCTTCACAAATAAAAAAAAAAAAATCAC‑‑ATtaaa‑a‑aat‑a‑aaa                                                                                                                         >  1:4192443/1‑128 (MQ=255)
   aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑Ttaaa‑a‑att‑a‑aaaaa                                                                                                                       >  2:4550311/1‑128 (MQ=255)
    ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCACTT‑‑‑AA‑A‑AAT‑a‑aaaaaaa                                                                                                                     >  2:4863054/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTAATAATGTAGATCCTCGTGATCTATTTTATTATTTGTTTAACTTCACAAATAAAAAAAAAAAAAAACACTaaaaaa‑a‑aaa‑a‑aaaaa                                                                                                                       >  2:2446205/1‑128 (MQ=255)
         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAA‑AAAAACCACTTAAA‑A‑ATT‑a‑aaaaaaaaaa                                                                                                                  >  2:2899483/1‑128 (MQ=255)
         gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTATATTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATCAAC‑‑TAAAA‑A‑AAT‑a‑aaaaaaaaaaa                                                                                                                 >  1:256548/1‑128 (MQ=255)
          ttaaccttaaaaaaaaaaACATAAACATAAAAATTTTAATAATTTTTTTCCTCTTTATATTTTTTTTTATTTTTTTA‑ATTTACAAAAAAAAAAAAAAAAAAACCC‑CTTAAA‑A‑AAT‑a‑aaaaaaaaaaaa                                                                                                                <  2:1080325/116‑1 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCACAT‑‑‑AA‑A‑AAT‑a‑aaaaaaaaaaaaa                                                                                                               >  2:3039156/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATTATTTGTTTATCTTCACAAATAAAAAAAAAACAAAACCC‑‑ATAAA‑A‑ATT‑a‑aaaaaaaaaaaa                                                                                                                >  2:4661901/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAACAAT‑‑AAAATTAAA‑A‑ATT‑a‑aaaaaaaaaaaa                                                                                                                >  1:710507/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAAAAAACACCTT‑‑‑AA‑A‑AAT‑a‑aaaaaaaaaaaaaaa                                                                                                             >  2:5014241/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAT‑‑CAAATTAAA‑A‑ATT‑a‑aaaaaaaaaaaaaa                                                                                                              >  1:1376878/1‑128 (MQ=255)
            aaGGTTAATTAAAAAACCATAAACTTAATAAATCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTATCTACACAAATAAAAAAAAAACAATCAAC‑‑TTAAA‑A‑ATT‑a‑aaacaaaaaaaaaa                                                                                                              >  2:576089/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑a‑aaaaaaaaaaaaaaa                                                                                                             >  2:665935/1‑128 (MQ=255)
             aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATAAAC‑‑TTAAA‑A‑ATT‑a‑aaaaaaaaaaaaaaa                                                                                                             >  1:2018722/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATAACC‑‑ATAAA‑A‑ATT‑a‑aaaaaaaaaaaaaaaa                                                                                                            >  2:1535112/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAAAAC‑‑AATAAA‑A‑AAT‑a‑aaaaaaaaaaaaaaaa                                                                                                            >  2:2636124/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑a‑aaaaaaaaaaaaaaaaaaa                                                                                                         >  2:4351996/1‑128 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTAGTTTATCTTAACAAATAAAAAAAAAAAAAAAACCATAaaaa‑a‑aaa‑a‑aaaaaaaaaaaaaaaaa                                                                                                           >  2:1209751/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTATTATAATGTAGATACTCGTGATCTATTTTTTTATATTTTTATATTCACAAATAAAAAAAAAAAAATCAC‑‑AATAAA‑A‑ATT‑a‑aaaaaaaaaaaaaaaaaaaa                                                                                                        >  1:3640552/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTATTATAATGAAGATAATATTGATCTATTATTTTATTTAATTATATTCACAAAAAAAAAAAAAAAAAAAAAC‑‑TTAAA‑A‑AAT‑a‑aaaaaaaaaaaaaaaaaaaa                                                                                                        >  1:1795945/1‑128 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAACAAT‑‑ACAATTAAA‑A‑ATT‑a‑aaaaaaaaaaaaaaaaaaaaa                                                                                                       >  1:3871012/1‑127 (MQ=255)
                     taaAAAACAAAAAACTTAAAAATTCTTATAATTGATATCCTCGTGATCTATTTTTTTATTTGTTTAAATTCACAAAAAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑a‑aaaaaaaaaaaaaaaaaactaaa                                                                                                     <  2:5105303/128‑6 (MQ=255)
                      aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑a‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  1:4726450/1‑124 (MQ=255)
                      aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCAC‑‑TTAAA‑A‑ATT‑a‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:397699/1‑124 (MQ=255)
                       aaataaaaaaaaaTTAAAAATTTTTATAATTTATAACCTAGTTATTAATTTTTTTATTTTTTTATATTTAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTaaa                                                                                                   <  1:1759958/119‑1 (MQ=255)
                       aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCC‑‑ATTAAA‑A‑ATT‑a‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:4415098/1‑123 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAAACaaaa                                                                                                  >  2:707964/1‑128 (MQ=255)
                         aaaaaaTAAAATTAAAAATTATTAAAATTTAAATAATATTTATTTATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCCCATAAAAA‑T‑TAA‑A‑AAAAAAAAAAAAAAAAAAAACTaaa                                                                                                   <  1:1316406/123‑1 (MQ=255)
                          tacataaaaaataataaTTTTAATAATATACAAACTCCTGAACTTTTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AA‑A‑AAT‑T‑AAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                               <  1:1076287/117‑1 (MQ=255)
                           aacATAAAATTATTAATTTTTATAATTTTTATCCTATTTTTTTATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAACAAAACCC‑‑TTAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                               <  2:4173594/126‑1 (MQ=255)
                           aacATAAAATTAAAAAATATTAAAATTTATATACTCTTTATCTATTTTTTTTTTTTTTTATCTTAAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                               <  1:80064/126‑1 (MQ=255)
                           aaaaTAAAATTAATAAATTTTATAATTTATATCATAGTTATATATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAAAAATACCC‑‑TTAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                               <  1:1852582/125‑1 (MQ=255)
                            ccATAAAATTAATAATTAATTTAATTTACATACTCTTTTTATTTTTTTTTAATAGTTTATCATAAAAAAAAAAAAAAAAACAAACCCC‑‑TTAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                              <  1:3821801/128‑1 (MQ=255)
                            acaaaaaaTTAATAATTATTATAAAGTATTACCTCGTGATCTATTTTTTTATTTTTTAATAATAACAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                              <  1:4367009/124‑1 (MQ=255)
                             cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAATAaaaaaaaaaa                                                                                             >  2:4303522/1‑128 (MQ=255)
                                aaaCTTCATAATTCTTATAATGTTGTTCCTCGTGATATATTTTTTTATTTTTTTATCTTCCCAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AA‑A‑AAT‑‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                       <  2:280044/128‑1 (MQ=255)
                                  aCTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACAAAAAAAAAACTatat                                                                                       >  2:1860596/1‑128 (MQ=255)
                                  aCTTAAAAATACTTATAATGTATATACTCCTGTTCTATTTTTTTATTTTTTTATCTTCAAAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                        <  1:4229219/128‑1 (MQ=255)
                                   attAAAAATTATTAAAATTTATATACTAGTTATCAATTTTTTTATTTTTTTAAATAAAAAAAAAAAAAAAAAAAAAACCCC‑TTAAAA‑A‑TTA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                        <  1:5319665/127‑1 (MQ=255)
                                       ataatTATTAAAAATTATATCCTACTTATATATTTTTTTTTTTTTTTATAAAAAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑AAT‑‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                                  <  1:2450097/128‑1 (MQ=255)
                                        taattaatAAAATTTATATCCTCTTTATTTTTTTTTTTTTTTTTTTTTAATAAAAAAAAAAAAAAAAAAGATCCCCTTAAAAA‑A‑TAA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                    <  1:602947/128‑1 (MQ=255)
                                        taaaTCTTATAATTTATATACTCGTGATCTATTTTTTTATTTTTTTATCTTAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑A‑AAT‑‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                                <  1:4303522/128‑1 (MQ=255)
                                          atTTTTATAATTTAAATAATAGTTATATATTTTTTTATTTTTTTATATTCAAAAATAAAAAAAAAAAAAATCACCTT‑‑AA‑A‑AAT‑‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                               <  1:5067804/128‑1 (MQ=255)
                                                         ttacttgttttCTTTTTTTTTATATTTTTATATTAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑A‑AAT‑‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                <  2:5253125/118‑1 (MQ=255)
                                                          tcctactttacTATTTTTTTTATTCTTTATATTAAAAAAAAAAAAAAAAAAAATACAATTAAAAATT‑TAA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                                   <  1:5523373/118‑1 (MQ=255)
                                                            ctacttatttatttttttattttttTAAAATAAAAAAAAAAAAAAAAAAAAAACCC‑CATAAA‑A‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                               <  1:4797826/119‑1 (MQ=255)
                                                            attgttttttATTTTTTTTTTTTTTTAAATT‑AAAAAAAAAAAAAAAAAAAAAAACATTAAAA‑A‑TTA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                               <  2:2134814/119‑1 (MQ=255)
                                                             ctcgcttatATTTTTTTAATT‑TTTTTAATAAAAAAAAAAAAAAAAAAAAAACCCCTTAAAA‑A‑TTA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                              <  2:4758260/120‑1 (MQ=255)
                                                              atttttatatttttttattttttTTTCTTAAAAAAAAAAAAAAAAAAAAACACATT‑‑‑AA‑A‑AAT‑‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                          <  1:2736232/121‑1 (MQ=255)
                                                                tttttatattttttttttttttATATATAAAAAAAAAAAAAAAAAAAAACCCCTT‑‑AA‑A‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                          <  2:5221284/120‑1 (MQ=255)
                                                                 tttttatttttttattttttTATATTAAAAAATAAAAAAAAAA‑AAAACACTTAAAAA‑T‑TAA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                          <  1:1946059/124‑1 (MQ=255)
                                                                 ttaaatattttttattttttaATATAAAAAAAAAAAAAAAAAAAAAACCC‑‑‑ATAAA‑A‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                        <  1:1009549/121‑1 (MQ=255)
                                                                  ttatatttttttattttttTATCTTCAAAAATAAAAAAAAAAAAATACAC‑‑TTAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                                        <  1:4524786/125‑1 (MQ=255)
                                                                   tatttttttttatttttttaAATTTAAAAATAAAAAAAAAAAAAATACCATTAAAA‑A‑TTA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                         <  1:2768071/124‑1 (MQ=255)
                                                                    ttatttttttattttttTATTTTAAAAAATAAAAAAAAAAAAATCCCCAT‑‑‑AA‑A‑AAT‑T‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                                     <  1:4584659/127‑1 (MQ=255)
                                                                     ttattttttATTTTTTTAAATTAAAAAAAAAAAAAAAAAAAAAAAC‑‑ATTAAA‑A‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                                     <  1:4094042/125‑1 (MQ=255)
                                                                      attattTTTTTTTTTTATATTAACAAAAAAAAAAAAAAAAATCCCC‑ATTAAA‑A‑TTA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                                     <  1:3493182/128‑1 (MQ=255)
                                                                       ttttttttttttttTATAATAAAAAAAAAAAAAAAAAAAAAACCCAT‑‑‑AA‑A‑AAT‑T‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                  <  1:5430633/128‑1 (MQ=255)
                                                                        ttttttttttttttATATT‑AAAAAAAAAAAAAAAAAAATAAACTT‑‑‑AA‑A‑AAT‑T‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                <  2:4793384/128‑1 (MQ=255)
                                                                        ttttttATTTTTTTA‑CATAAAAAAAAAAAAAAAAAAAAAACCC‑ATAAAA‑A‑ATA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                  <  1:4478782/128‑1 (MQ=255)
                                                                         tttttaatttttaaTATTAAAAAAAAAAAAAAAAAAAATACCC‑TAAAAA‑A‑TTA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                  <  1:5014241/128‑1 (MQ=255)
                                                                         tttttATTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAACCTT‑‑‑AA‑A‑AAT‑T‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATGCCACATTTTATTTTTaaa                                                <  2:1389938/128‑1 (MQ=255)
                                                                         tttttATTTTTTAATATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                 <  1:1920747/128‑1 (MQ=255)
                                                                         tttttAATTTTTTATATTAAAAAATAAAAAAAAAAAAAACACC‑‑TTAAA‑A‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                 <  1:1627919/128‑1 (MQ=255)
                                                                          ttttttttttttATATTAAAAAAAAAAAAAAAAAAAATTCAC‑‑TTAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                <  1:2388256/128‑1 (MQ=255)
                                                                          ttttATTTTTTTAAATAAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAAAA‑A‑AAT‑‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAGAATTCCCTATTATACCACATTTTATTTTTaaaa                                               <  2:5394764/128‑1 (MQ=255)
                                                                              aTTTTTTTATATTCAAAAATAAAAAAAAAAAAATCCCCTTT‑‑AA‑A‑AAT‑‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                          <  1:5156458/128‑1 (MQ=255)
                                                                                ttttttATATTAAAAAATAAAAAAAAAAAAAAACCCTTTAAAA‑T‑TAA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTATTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                            <  1:1221630/125‑1 (MQ=255)
                                                                                  tttttatttaacaAATAAAAAAAAAAAAAAAACC‑CTTAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                                         <  1:2899483/118‑1 (MQ=255)
                                                                                   tttATCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑A‑AAT‑T‑AAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATATTTTTATTAAAATTCCATTTTAAACAAATTTTTATTTTTAATATaatttttta                                     >  1:4952246/1‑121 (MQ=255)
                                                                                   tttATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAA‑TAAAAACAAAATAAATTTGTTAAAATACCATATTAAACCACATTTTATTTTTAAATAAATATAtt                                      >  2:4476887/1‑128 (MQ=255)
                                                                                   tttATATTAAAAAAAAAAAAAAAAAAAATACACTT‑‑‑AA‑A‑AAT‑T‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                      <  1:1263716/128‑1 (MQ=255)
                                                                                     tatattaaaaaaaaaaaaaaaaaaaaaACCCTAAAAAA‑ATAAA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                        <  2:4938482/119‑1 (MQ=255)
                                                                                      ttatttaaaaaTAAAAAAAAAAAAATAACATT‑‑‑AA‑A‑AAT‑T‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACa                                 <  1:4250496/120‑1 (MQ=255)
                                                                                      attataaaaaaTAAAAAAAAAAAAATTCAC‑‑TTAAA‑A‑ATA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑a                                   <  1:1125477/120‑1 (MQ=255)
                                                                                       tcatccaaaaTAAAAAAAAAAAAAACCCC‑‑‑TAAT‑A‑AAA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACa                                 <  2:3460609/121‑1 (MQ=255)
                                                                                        attaaaaaaTAAAAAAAAAATAATACC‑‑ATTAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACa                                 <  1:3200899/122‑1 (MQ=255)
                                                                                         ttCACAAA‑AAAAAAAAAAAAAAAACCATAAAAA‑A‑ATA‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACa                                 <  2:5530307/128‑1 (MQ=255)
                                                                                           aaaaaaTAAAAAAAAAACAATCCCC‑‑TAAAA‑A‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACataa                              <  1:521566/125‑1 (MQ=255)
                                                                                             caAATAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAAATAAAAACAAACGAATTTTATTAAAATTCCATATTTTACACAATTTTATTTTTAAAAAAAAATATTT‑AAataaat                            >  2:1729186/1‑126 (MQ=255)
                                                                                             aaaaTAAAAAAAAAAAAAT‑ACATTTT‑AA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGatatatattatgtc                             <  1:2130457/127‑11 (MQ=255)
                                                                                                       aaaaaCAATCCCC‑‑TTAAA‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAA‑TAAAAACAAAATATAATTGAAAAAATTACATTTAATAAAAAATTTTTTTTTAAAAATAATATTTTGAATATAATAT‑TATATAatt                 >  2:2310465/1‑127 (MQ=255)
                                                                                                             aaatacaattaaaa‑a‑tat‑a‑aaaaaAAAAAAAAAAAAAAACTAAAAACAAACTATATTTCTTAAAATTCCCTATTATAACACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAatatat              <  1:3750427/117‑1 (MQ=255)
                                                                                                             aaaaaaacccctaa‑a‑aaa‑a‑taaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAATCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAatatat              <  2:1686692/116‑1 (MQ=255)
                                                                                                              aaataccattaaa‑a‑att‑a‑aaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATTAGatatata             <  1:2116874/120‑1 (MQ=255)
                                                                                                               aataaacttAAA‑A‑ATT‑T‑AAAAAAAAAAAAAAAAAAAACTAAAATCAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAatatatat            <  1:4661901/121‑1 (MQ=255)
                                                                                                               aataaaattaaa‑a‑attaa‑aaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAatatata             <  1:65090/121‑1 (MQ=255)
                                                                                                               aaaaaacttaaa‑a‑att‑a‑aaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTAATTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATATTagatatat            <  1:3941008/121‑1 (MQ=255)
                                                                                                                attaaattAAT‑A‑ATT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAAtatatata           <  2:2054490/122‑1 (MQ=255)
                                                                                                                  aatcttaaa‑a‑attaa‑aaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATataa          <  1:1461588/124‑1 (MQ=255)
                                                                                                                    caataaa‑a‑att‑a‑aaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAACACTTTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATATAATAc       <  1:3057569/125‑1 (MQ=255)
                                                                                                                    acattaa‑a‑tat‑t‑aaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAACACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATATAATAc       <  1:91082/123‑1 (MQ=255)
                                                                                                                     cttaaa‑a‑attaa‑aaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATATAATAc       <  1:2298918/127‑1 (MQ=255)
                                                                                                                     cattaa‑a‑aat‑t‑aaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATATAATACt      <  1:1690960/124‑1 (MQ=255)
                                                                                                                      ctaaa‑a‑aaa‑t‑aaaaaaaAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATATAATACta     <  2:4701946/127‑1 (MQ=255)
                                                                                                                         aa‑a‑att‑a‑aaaatAAAAAAAAAAAAAAACTAAAAAAAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATATAATACTatat  <  2:3621226/128‑1 (MQ=255)
                                                                                                                         aa‑a‑aat‑t‑aaaaaAAAAAAAAAAAAAAAAAAAAAACAAACTAAATTTATTAAAATAACAAATAATAAAACATTTTAATTTTAAAAAAATATATTT‑ACATAATATAAATAAAAAATATATAATAatatat  >  1:4885270/1‑128 (MQ=255)
                                                                                                                         aa‑a‑aat‑ataaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATATAATACtata   <  1:2835246/128‑1 (MQ=255)
                                                                                                                         |                                                                                                                                    
AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑A‑AAT‑A‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTG‑ACATAATATATATCTAATATATATAATACTATAT  >  CP016816/202369‑202617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.