Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2341.T45.1% inf / inf 1256intergenic (‑517/+326)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base . (410/278);  new base T (427/139);  total (837/419)
Fisher's exact test for biased strand distribution p-value = 3.17e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.39e-14

Only 100 of 1500 total aligned reads displayed.

TTTTATTAGTTGATATATTAGAAAACTACTAGCACTTT‑TTT‑AAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAA  >  CP016816/420107‑420362
                                                                                                                                              |                                                                                                                                     
ttttATTAGTTGATATATTAGAAAACTACTAGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑g                                                                                                                                        >  2:4123433/1‑128 (MQ=255)
 tttATTAGTTGATATATTAGAAAACTACTAGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑t                                                                                                                                     >  2:4197929/1‑128 (MQ=255)
  gtattttttctaatatTACAAAAATAATACCAATTTATTT‑AAAAAATATTATTTTTAAA‑AAATAAAAAATTTTTCAAATTGTTAAATTATTTTCAAAACATTATTTAT‑TAATAAA‑‑‑ATTTA‑T‑GC‑‑G‑C‑‑‑G‑‑tt                                                                                                                                    <  2:310728/116‑1 (MQ=255)
   tattaGTTGATATATTAGAAAACTACTAGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTATATTATTTTCAATTCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑ttt                                                                                                                                   >  1:3489842/1‑128 (MQ=255)
   tattaGTTGATATATTAGAAAACTACTAGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑ttt                                                                                                                                   >  1:4849803/1‑128 (MQ=255)
   tattaGTTGATATATTAGAAAACTACTAGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑ttt                                                                                                                                   >  1:1940029/1‑128 (MQ=255)
     ttaGTTGATATATTAGAAAACTACTAGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTATATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑ttttt                                                                                                                                 >  2:2839523/1‑128 (MQ=255)
         ttGATATATTAGAAAACTACTAGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑ttttttttt                                                                                                                             >  1:5513949/1‑128 (MQ=255)
         ttGATATATTAGAAAACTACTAGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑ttttttttt                                                                                                                             >  1:1698682/1‑128 (MQ=255)
             tatatTAGAAAACTACTAGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑ttttttttttttt                                                                                                                         >  2:4676133/1‑128 (MQ=255)
              atatTAGAAAACTACTAGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑ttttttttttttt‑t                                                                                                                       >  1:2541848/1‑128 (MQ=255)
              atatTAGAAAACTACTAGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑ttttttttttttt‑t                                                                                                                       >  1:4339199/1‑128 (MQ=255)
                 ttattaaaCTAAAATCAATTT‑TTT‑AAAATATTTTTATATTTAATAAATGATATATTTTTCAAATTGTTAAATTTTTTTAAAATCATTATCTTT‑TAATTAA‑‑‑TTTTA‑T‑GC‑‑G‑C‑‑‑G‑‑ttttttttttttt‑ttt‑t                                                                                                                   <  2:5235619/123‑1 (MQ=255)
                   aGAAAACTACTAGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑TA‑‑T‑C‑‑‑T‑‑ttttttttttttt‑tttaaa                                                                                                                  >  2:4993834/1‑125 (MQ=255)
                      aaaCTACTAGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATAAA‑‑‑TTTTA‑T‑TC‑‑T‑C‑‑‑T‑‑TTTTTTTTTTTTT‑TTT‑T‑Aaaaa                                                                                                             >  1:3574004/1‑128 (MQ=255)
                      aaaCTACTAGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTATCAAATCATTATCTAT‑TAATCAA‑‑‑TTATA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTTAATT‑T‑ACaa                                                                                                              >  1:5324381/1‑128 (MQ=255)
                      aaaCTACTAGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTATTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑ttttttttttttt‑ttt‑ttttaa                                                                                                              >  1:1437704/1‑123 (MQ=255)
                       aaCTACTAGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑TAaaaa                                                                                                            >  2:2775870/1‑128 (MQ=255)
                         ctactaGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑T‑‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAat                                                                                                          >  1:3998327/1‑128 (MQ=255)
                          tactaTCAATTT‑TTT‑AAAAAATTTTTATTTTTAAAAACTTAATTTTTTTTTAAATTGTTAAATTATTTTCAAATCATTATATAT‑TTATAAA‑‑‑TTTTA‑T‑TC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAat                                                                                                          <  2:4458914/128‑1 (MQ=255)
                          tactaTCAATTT‑TTT‑AAAAAAATTTTAATTTTAATAACTGAATTATTTTTAAAATTGTTAAATTATTTTAAAATAATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAat                                                                                                          <  1:4757105/128‑1 (MQ=255)
                          tactaGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑ttttttttttttt‑ttt‑ttaacaaaaa                                                                                                          >  2:4918045/1‑119 (MQ=255)
                          tactaGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑Taaaaaaat                                                                                                         >  1:1892565/1‑126 (MQ=255)
                          tactaGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAatt                                                                                                         >  1:5087861/1‑127 (MQ=255)
                          taatatcACTTT‑TTTAAAAAAATATTATATT‑TTATAAATTAATTATTTTTTAAATTTTTAAATTTATTTAAAATCATTATAAAT‑TAATAAA‑‑‑TTTTT‑T‑GG‑‑T‑C‑‑‑G‑‑GTTTTTTTTTTTT‑TTT‑T‑ACAAAAata                                                                                                         <  1:3878015/122‑1 (MQ=255)
                           cattcaatttt‑ttt‑AAAAAATTT‑TAATTTTAATAACTGTATTATTTTTGAAATTTTTAAATTATTTTTAAATACTAATAAAT‑TAAACAA‑‑‑ATTTA‑T‑GC‑‑T‑G‑‑‑GGTTTTTTTTTTTTTT‑TTT‑T‑ACAAAAata                                                                                                         <  1:4113931/120‑1 (MQ=255)
                            ttttaaattt‑ttt‑AAATAATTTTTTTTTTTAATAAATTAATTTTTTTTAAAATTTTTAAATTATTTTAAAATATTTTTATTT‑TTATAAA‑‑‑TTTTA‑T‑TT‑‑T‑T‑‑‑T‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAAta‑ta                                                                                                      <  2:118200/121‑1 (MQ=255)
                            ctaGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑TTAAAAAaa‑ta                                                                                                      >  1:1801404/1‑128 (MQ=255)
                            ctaGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑TAAAAAAaa‑ta                                                                                                      >  1:3255494/1‑128 (MQ=255)
                             tatcACTTT‑TTT‑AAAAAATTTTTAATTTTAATAAATTAATTATTTTTAAAATTTTTAAATTATTTTAAAATCATTATCTAT‑TAATAAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑Taa                                                                                                     <  1:5041255/125‑1 (MQ=255)
                             taGCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑Taaaaaaattta                                                                                                      >  1:595332/1‑123 (MQ=255)
                              tttaattt‑ttt‑TAAAAATTTTTTATTTTTATAAATTTATTATTTTTTAAATTTTTTAATTTTTTTTAAATAATTATAAAT‑TTATAAA‑‑‑TTTTT‑T‑TC‑‑T‑T‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAat                                                                                                    <  1:1002565/123‑1 (MQ=255)
                               gCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑TTAAAAa‑a‑taataa                                                                                                  >  2:680027/1‑126 (MQ=255)
                               gCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑TAAAAAAAA‑Taaaa                                                                                                   >  1:2724269/1‑126 (MQ=255)
                               gCACTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TATTA‑T‑GC‑‑T‑A‑‑‑G‑‑TATTTTTTTTTTT‑ATT‑T‑Aaaaaaaaaataaa                                                                                                    >  1:787302/1‑121 (MQ=255)
                                 aCTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TAattt                                                                                                  >  2:5172690/1‑128 (MQ=255)
                                  cTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑AAtttta                                                                                                 >  1:5201988/1‑128 (MQ=255)
                                  cTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑TAAAAAAAA‑TAaattaa                                                                                                >  1:4950019/1‑127 (MQ=255)
                                  cTTT‑TTT‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATAATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑TC‑‑T‑C‑‑‑‑‑‑TTATTTTTTTTTT‑TTT‑T‑AAAAAAATA‑AAatttatt                                                                                               >  1:1996584/1‑128 (MQ=255)
                                   ttt‑ttt‑AAAAAATTTTTTATTTTAATTAATTTATTATTTTTTAAATTTTTAAAATATTTACAAATTAATAATTAA‑TAATAAATTTTTTTG‑T‑GG‑‑T‑T‑‑‑T‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAattt                                                                                                  <  2:1727344/128‑1 (MQ=255)
                                   ttt‑ttt‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑‑TTTTTTTTTTTT‑TTT‑T‑AAAAAAATT‑TAatttattt                                                                                              >  2:1914930/1‑128 (MQ=255)
                                   ttt‑ttt‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑‑TTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TAatttattt                                                                                              >  1:1085341/1‑128 (MQ=255)
                                   ttt‑ttt‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑‑‑TTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTg                                                                                             >  1:3050656/1‑128 (MQ=255)
                                   ttt‑ttt‑AAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTATA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTTAA‑ACAAAAAAA‑TAatttat                                                                                                >  1:706764/1‑128 (MQ=255)
                                   ttt‑ttt‑AAAAAATTTTTAATTTTAATAAATTAATTATTTTTTAAATTTTTAAATTATTTTAAAATTATTATATAT‑TAATCAA‑‑‑TTTTA‑T‑TC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAatttat                                                                                                <  1:4197929/128‑1 (MQ=255)
                                   ttt‑ttt‑AAAAAATTTTTAATTTTAATAAATGAATTATTTTTAAAATTTTTAAATTTTTTTAAAATAATTATATAT‑TAATAAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑‑TTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAatttattt                                                                                              <  1:895960/128‑1 (MQ=255)
                                       ttt‑AAAAAATTTTTTATTTTAATTAATTTATTTTTTTTAATATTTTTTAATTATTTTAAAATAATTATATAT‑TAATAAA‑‑‑TTTTA‑T‑TC‑‑T‑A‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTGa                                                                                            <  1:2357613/128‑1 (MQ=255)
                                       ttt‑AAAAAATTTTTAATTTTAATAAATTTATTATATTTCAAATTTTTAAATTATTTTTAAATAATTATATAT‑TAATAAA‑‑‑TTTTA‑T‑TC‑‑T‑A‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTGa                                                                                            <  1:340110/128‑1 (MQ=255)
                                             aaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑CT‑‑T‑‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TAATTTATttaattaa                                                                                        >  1:4893727/1‑128 (MQ=255)
                                             aaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GTTTTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TAATTTTTTttatta                                                                                         >  1:2942866/1‑128 (MQ=255)
                                               aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑TAAAAAAAATA‑AATATTATTTTATTAAAc                                                                                      >  2:595063/1‑128 (MQ=255)
                                               aaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GA‑‑T‑CT‑‑T‑‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAAAA‑TAATTAATTTTAATaaaa                                                                                      >  1:3669968/1‑127 (MQ=255)
                                                 tttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑A‑ACAAAAATA‑TTATTTATTTGATTAAACTta                                                                                   >  2:4736969/12‑128 (MQ=255)
                                                  ttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑AAAAATATA‑AATTTTTTTTTTTTACACTtat                                                                                  >  2:1008481/11‑128 (MQ=255)
                                                  ttttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑‑‑TTTTTTTTTTT‑TTT‑T‑AAAAAAAAA‑TAATTTAATTTATTTAAAGTaaat                                                                                >  1:2821931/11‑128 (MQ=255)
                                                        ttttaattaattaaTTATTTTTAAAATTTTTAAATTTTTTTTAAATAATTATTTAT‑TAATAAA‑‑‑TTTTT‑T‑TC‑‑T‑A‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTa                                                                             <  1:4424050/116‑1 (MQ=255)
                                                         tttaataatTTAATTATTTTTAAAATTTTTAAATTATTTTTAAATTATTATCTTT‑TAATAAA‑‑‑TTTTA‑T‑GG‑‑T‑T‑‑‑GTTTTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTa                                                                             <  2:4606463/125‑1 (MQ=255)
                                                         tttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAAAA‑TAATTTAATTAATTAAACTTttatttat                                                                            >  1:2458095/4‑128 (MQ=255)
                                                          ttaattacattatttttTTTTAAATTGTTTAAATATTTTTAAAACATTATCTAA‑TAAACAA‑‑‑TTTTA‑TGGC‑‑TGT‑‑‑T‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTAt                                                                            <  2:2408642/117‑1 (MQ=255)
                                                          ttaattaatttattattTTTTAAATTGTTAAATTATTTTTAAATAATTATATAT‑TAATAAA‑‑‑TTTTA‑T‑TC‑‑T‑CTTTT‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTa                                                                             <  1:4479861/117‑1 (MQ=255)
                                                           taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TATTTTATTTTTTAAAAAGTATATTTAttt                                                                          >  2:536633/2‑126 (MQ=255)
                                                             tataattatttattTTTTAAATTTTTTTATTTTTTTAAAATTATTATATAT‑TAATTAA‑‑‑TTTTT‑T‑TT‑‑C‑T‑‑‑T‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTta                                                                       <  1:4668197/119‑1 (MQ=255)
                                                             attaatttatttttTTTAAAATTTTTTAATTTTTTTAAAATAATTATATAT‑TAATAAA‑‑‑TTTTA‑T‑TG‑‑T‑A‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGttt                                                                        <  1:542433/120‑1 (MQ=255)
                                                             atAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTTATTAAACTTATTTTTTTTTTta                                                                       >  1:5255308/1‑128 (MQ=255)
                                                              taatttaaTTTTTTTTTAAATTTTTTAATTTTTTTTAAATAATTATTTTT‑TAATTAAT‑‑TTTTT‑T‑TT‑‑T‑T‑‑‑T‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTta                                                                       <  1:2608931/122‑1 (MQ=255)
                                                                 attttttttttttATAATTTTTTAATTTTTTTAAAATAATTATATTT‑AAATAAA‑‑‑TTTTT‑T‑GT‑‑T‑T‑‑‑T‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTtaataa                                                                   <  2:3530579/120‑1 (MQ=255)
                                                                  tGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTTATTAAAATTATATTTATTTTtaataa                                                                   >  2:4320721/1‑128 (MQ=255)
                                                                  tGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TAATTTATTTTATTAACCTTATTTTTATTTTtaataa                                                                   >  1:5140171/1‑128 (MQ=255)
                                                                    aaTTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTTTTTAAAAGTATATTTATGTTTAATaaaa                                                                 >  2:1485034/1‑128 (MQ=255)
                                                                     attattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TAATTTATTTTTTTAAACATAAATTTTTTGTTAATtaaat                                                                >  2:4399967/1‑127 (MQ=255)
                                                                         ttttttAAATTTTTAAATTTTTTTTAAAATATTATATATAAAAAAAA‑‑‑TTTTA‑T‑TCTTT‑T‑‑‑T‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATg                                                              <  2:4849803/128‑1 (MQ=255)
                                                                           ttttataTTGTTATATTATTTTATAATATTTTTTTTT‑TTATTAA‑‑‑TTTTT‑T‑TT‑‑T‑C‑‑‑T‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAATAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaaaa                                                         <  2:2575437/122‑1 (MQ=255)
                                                                           tttCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GTTTTTTTTTTTTTTT‑TTT‑T‑AAAAAAATT‑TAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAAtttaa                                                           >  1:4152560/1‑124 (MQ=255)
                                                                           tttCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑TAACAAAAATA‑TAATTTTTTTCATTAAACTAATATTTATTTTTAATAAAAATgttaa                                                          >  2:2932474/1‑124 (MQ=255)
                                                                            tttaaaTTTTTTAATTTTTTTAAAATTATTATTTTT‑TAATTAA‑‑‑TTTTT‑T‑TT‑‑T‑CT‑‑T‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaaaa                                                         <  1:1240352/125‑1 (MQ=255)
                                                                             tCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GTTTTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TAATTTTTTTTATTAAAATTTTTTTTATTTTTAATAAAAATGTaaaa                                                         >  2:453389/1‑128 (MQ=255)
                                                                             tCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑TAACAAAAATT‑TAATTTATTTTATAAAACTTAATTTTATTTTTAATAAAAATTAaaaat                                                        >  1:1311335/1‑127 (MQ=255)
                                                                               aaaTTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GTTTTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TAATTTATTTTATTAAACTTATATTTATTTTTAATAAAAATTTaaaata                                                       >  1:1371678/1‑126 (MQ=255)
                                                                                aaTTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TAATTTATTTTATTAAAAGTATATTTATTTTTAATAAAAATTTaaaaaaaat                                                    >  1:152093/1‑127 (MQ=255)
                                                                                    gTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GTTTTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TAATTTTTTTTATTAAACTTATATTTATGTTTAATAAAAATTTaaaaaaaattt                                                  >  2:4243047/1‑125 (MQ=255)
                                                                                      tAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAATTT‑TAATTTTTTTTATTAAAAGTATATTTATGTTTAATAAAAATGTAAAATAAATTGatt                                               >  2:3859913/1‑126 (MQ=255)
                                                                                         attattTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TAATTTATTTTATTAAAAGTATTTTTATTTTTAATAAAAATGTAAAAGAAATTTAATTGt                                            >  1:2890039/1‑128 (MQ=255)
                                                                                          ttattTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GTTTTTTTTTTTTTTT‑TTT‑T‑AAAAAAAAT‑TAATTTATTTTATTAAATGTATTTTTTTTTTTTAAAAATATTTAAAATTAAGTGATTTGt                                            >  2:1604597/1‑128 (MQ=255)
                                                                                           tattTTAAAATAATTATATAT‑TAATAAA‑‑‑TTTTA‑T‑TA‑‑T‑T‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCa                                          <  1:4532196/128‑1 (MQ=255)
                                                                                             ttttTAAATAATTATATTT‑TAATTAA‑‑‑TTTTATT‑TT‑‑T‑T‑‑‑T‑‑TTTTTTTTTTTTT‑TTT‑T‑ACATAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCata                                        <  2:5094318/128‑1 (MQ=255)
                                                                                                  aaaTCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TAACTTATTTATTTAAAATTATATTTATTTTTAATAAAAATGAAAAATAAATTAAATTATAAAaataat                                   >  2:3238093/1‑128 (MQ=255)
                                                                                                   aaTCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑AAATTTATTTTATTAAAATTATATTTATTTTTAAAAAAAATGAAAAATAAATTAAATTTAAATAAtaatt                                  >  1:210827/1‑128 (MQ=255)
                                                                                                        ttATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TATTTTTTTTTATTAAAATATTATTTATTTTTAATAAAAATTTAAAAAAAATTTAATTTTAAAAAtaatttattt                             >  1:117493/1‑128 (MQ=255)
                                                                                                            cTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GTTTTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTTATTAAACGTTTATTTTTGTTTAATAAAAATGGAAAAAAAAGTGAATTGAAAAAATAATTTAATaaaa                          >  1:4605708/1‑128 (MQ=255)
                                                                                                             tAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAAAATTAATTTTTTTAATTAAAAGTAT‑TTTTTTTTTAAAAAAAATTTAAAAAAAAATTTAATGTAAATATAATTTTaataaata                        >  2:362/1‑128 (MQ=255)
                                                                                                              aT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GTTTTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTTTTTTTTTAAAATTTATTTTATTTTTAATAAAAATTGAAATAAAAGTTAATTTTAATAATTATttatttaataa                        >  2:2068945/1‑125 (MQ=255)
                                                                                                              aT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GTTTTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAATGTAAAATAAATTGAATTGTCATAATAATTTAATTAAata                        >  1:375370/1‑128 (MQ=255)
                                                                                                              aT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TAATTTTTTTTATTAAAGGTATATTTATTTTTAATAAAAATGAAAAATAAATTTAATTTTAATAATAATTTATTTAAatat                       >  1:656352/1‑128 (MQ=255)
                                                                                                               t‑tAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAATTT‑TAATTTTTTTTATTAAACGTTTTTTTTTGTTTATTAAAAATGTAAAAGAAATTGATTTTTAATATTAATTTAATTAAatatt                      >  1:2231119/1‑127 (MQ=255)
                                                                                                                  aaTCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑AAATTTATTTTAATAAACGTTTATTTTTTTTTAATAAAAATGAAAAATAAATTGAATTTAAAAAAATATTAAAATAAAtatata                    >  2:1269115/1‑128 (MQ=255)
                                                                                                                    tCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAAAA‑AAAATTATTTATTTAAAAGTAAATTTTTTATAAAATAAAATAAAATATAAATTTTATTTTAATAATAAATTATTTAAatattaatc                  >  1:4267385/1‑123 (MQ=255)
                                                                                                                            tttA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAATA‑TATTTTTTTTTTTTAAACGTATTTTTTTTTTTAATAAAAATGTAAAATAAATTTATTTTTAAAAATAATTTAATTAAATATTTAAAAAttaa            >  2:1387556/1‑125 (MQ=255)
                                                                                                                              tA‑T‑GC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑AAAAAAATT‑TAATTTATTTTATTAAACTTATTTTTTTTTTTAATAAAAATTGAAAAAAATTTTAATTTTAATATAAATTTATTTAAATATATAACAATTTaa           >  1:3170176/1‑128 (MQ=255)
                                                                                                                                   gC‑‑T‑C‑‑‑GT‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTTATTAAACGTATATTTTTGTTTAAAAAAAATTGAAAAGAAATTGAATTGTCATAATAATTTAATTAAATATAAAAAaatttaattt        >  2:5467586/1‑128 (MQ=255)
                                                                                                                                             g‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTTATTAAACGTATATTTATTTTTAATAAAAATGTAAAATAAAGTTAATTTTAATAATAATTTAATTAAATTTATAAAAATTTAATTTTTaaa   >  1:1584216/1‑128 (MQ=255)
                                                                                                                                              |                                                                                                                                     
TTTTATTAGTTGATATATTAGAAAACTACTAGCACTTT‑TTT‑AAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTAT‑TAATCAA‑‑‑TTTTA‑T‑GC‑‑T‑C‑‑‑G‑‑TTTTTTTTTTTTT‑TTT‑T‑ACAAAAATA‑TAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAAGTTTTAAAA  >  CP016816/420107‑420362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑