Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2780CA33.4% 2520.0 / 262.4 1666intergenic (‑561/+282)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base C (594/464);  new base A (270/261);  total (886/780)
Fisher's exact test for biased strand distribution p-value = 4.83e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1706 total aligned reads displayed.

AAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGA  >  CP016816/420151‑420405
                                                                                                                                            |                                                                                                                                 
aaaTTTTTAATTTTAATAAATTAATTTTTTTTAAAATTTTTAAATTATTTTAAAATAATTATATATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑G‑‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTGATTAAACg                                                                                                                                  <  1:428588/128‑1 (MQ=255)
         attttaatAACTTAATTTTTTTTAAAATTTTTAAATTATTTTAAAATAATTTTAATTTAATAAA‑TTTTT‑T‑‑TTTCT‑‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAt‑tt                                                                                                                          <  2:5351021/123‑1 (MQ=255)
          ttttaatAAATTAATTATTTTTAAAATTTTTATATTATTTTTAAATAAATATATATTAATTAA‑TTTTA‑T‑‑TTTCT‑‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTa                                                                                                                         <  1:4425886/124‑1 (MQ=255)
            ttaattaatttattattTTTTAAATTGTTAAATTATTTTTAAATAATTATATATTAATAAA‑TTTTA‑T‑‑TCTCTTTT‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTa                                                                                                                         <  1:4479861/117‑1 (MQ=255)
             taatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAAAATAATTTT‑TTTTATTAAAAGTTAAt‑tttattt                                                                                                                     >  1:341596/2‑123 (MQ=255)
              aataatTTAATTTTTTTTTAAATTTTTTATTTTTTTTTAAATAATTATTTATTTATAAA‑TTTTT‑T‑‑TTTC‑‑‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGtt                                                                                                                     <  2:1330392/128‑1 (MQ=255)
              aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑GTT‑TTTTTTTTTTTTTTTTT‑‑AAAAAATTTTAATTTA‑TTTTATTAAACTTAAAT‑TTAttt                                                                                                                      >  1:191232/1‑126 (MQ=255)
              aatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑TAAAAAAAATTATTTATTTTTATTAAACTTTTAT‑TTAtttt                                                                                                                     >  1:2915945/1‑128 (MQ=255)
              aaataattaaTTTTTTTTTAAATTTTTAAATTTTTTTTAAATAATTATATATTAATAAA‑TTTTA‑TTATATT‑‑‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGt                                                                                                                      <  1:2647637/120‑1 (MQ=255)
               tataattatttattTTTTAAATTTTTTTATTTTTTTAAAATTATTATATATTAATTAA‑TTTTT‑T‑‑TTCT‑‑‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTta                                                                                                                   <  1:4668197/119‑1 (MQ=255)
                ttattttttttttttttAAATTTTTTATTTATTTTAAAATAATTATATTTTATTTAA‑TTTTATT‑‑TTTT‑‑‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTta                                                                                                                   <  1:3858179/117‑1 (MQ=255)
                    tGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑G‑‑‑‑TTTTTTTTTTTTTTTT‑‑AAAAAAATATAATTTA‑TTTTTTTAAAAGTATAT‑TTTTTTTTAATaaaa                                                                                                             >  1:460401/1‑128 (MQ=255)
                      tatttttTTTTATTTTTTTTAATTTTTTTTTATTTATTTTTTATTTATAAA‑TTTTT‑T‑‑TATT‑‑‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATaaaaa                                                                                                            <  1:4000578/127‑1 (MQ=255)
                       attattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAATTTA‑TTTTATTAAACTTATAT‑TTATTTTTAATaaaaa                                                                                                            >  1:2237187/1‑128 (MQ=255)
                       attattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑G‑‑‑‑‑TTTTTTTTTTTTTTT‑‑AAAAAAAAAAAATTTA‑TTTTATTAAAAATATTT‑TTATTTATAaaaaaattta                                                                                                         >  2:3211400/1‑124 (MQ=255)
                        ttattaTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GATC‑‑‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑TAAAAATTAAAATATA‑TTTATTTAAAAATATATATTATTTTAAAAAAAAAt                                                                                                           >  2:4748792/1‑128 (MQ=255)
                         tattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAATTTA‑TTTTATTAAACTTATAT‑TTATTTTTAATAAAAATg                                                                                                          >  1:1655285/1‑128 (MQ=255)
                          tttttttaatttttttaatTTTTTTTAAATAATTTTTTTTTTATTAATTTTTT‑T‑‑TTTT‑‑‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAATgg                                                                                                         <  2:1981208/127‑1 (MQ=255)
                                 aaaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑GTT‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAATTTA‑TTTTATTAAACTTATAT‑TTATTTTTAATAAAAATTTaaaata                                                                                                   >  1:1371678/1‑126 (MQ=255)
                                  aaTTGTTAAATTATTTTCAAATCATTATCTTTTAATAAA‑TTTTA‑T‑‑GCTC‑‑‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAATTATATTTTA‑TTTAATTAAACTTATAT‑TTATGTTTATAATAAATGAAaaataaa                                                                                                 >  1:3744876/1‑128 (MQ=255)
                                     tttaaaaTTTATTTAAAATAATTATATTTTTATTAA‑TTTTT‑T‑‑TCTC‑‑‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTg                                                                                              <  1:4896822/124‑1 (MQ=255)
                                           attattTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑GTTTTTTTTTTTTTTTTTTTT‑‑ACAAAAATAAAATTTA‑TTTTATAAAAATTATAT‑TTATTTTTAATAAAAATTTAAAATaaattaaatt                                                                                          >  1:5050594/1‑128 (MQ=255)
                                           attattTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑GTT‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATAAAATTTA‑TTTTATTAAAAGTATAT‑TTATTTTTAATAAAAATGTAAAATAAAGTTAAttt                                                                                         >  2:359431/1‑127 (MQ=255)
                                           attattTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATAAAATTTA‑TTTTATTAAAAGTTTAT‑TTTTTTTTAATAAAAATGTAAAATAAATTTAAtttta                                                                                       >  1:2543220/1‑125 (MQ=255)
                                             tattTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATAAAATTTT‑TTTTATTAAACGTATTT‑TTATGTTAATTAAAAATGAAAAAAAAATTTAAtttaaat                                                                                     >  1:2742751/1‑123 (MQ=255)
                                             tattTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑G‑‑‑‑TTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTGATTAAACGAATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTAat‑a                                                                                   >  1:4227291/1‑128 (MQ=255)
                                              attTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAATTGAAAATAAATTAAATTTTAat‑a                                                                                   >  2:2653867/1‑128 (MQ=255)
                                                tttCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATTTATTTTT‑TTTTATTAAAGGTTTTT‑TTTTTTTTAATAAAAATGTAAAATAAATTTAAtttgaataa                                                                                   >  2:657965/1‑121 (MQ=255)
                                                tttAAAATAATTTTATATTAATTAA‑TTTTT‑T‑‑TTTT‑‑‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAATTTA‑TTTGATTAAAATTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCat‑aat                                                                                 <  1:1571260/128‑1 (MQ=255)
                                                tttAAAATAATTATTTATTAATAAA‑TTTTT‑T‑‑TTTT‑‑‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTGATTAAACTTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCat‑aat                                                                                 <  1:1995046/128‑1 (MQ=255)
                                                 ttCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAATTTA‑TTTTATTAAAATTATTT‑TTTTTTTTTATAAAAATTTAAAAAAAATTTAATTTtaat‑aaaa                                                                                >  1:652035/1‑126 (MQ=255)
                                                    aaaTCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTAATTAAACGTATAT‑TTTTTTTTAATAAAAATGTAAAATAAAGTGAATTGTATT‑AAtaatt                                                                             >  1:583130/1‑128 (MQ=255)
                                                        cATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAAAATAATTTA‑TTTGATTAAACGTATAT‑TTATTTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AAtaatttaa                                                                          >  2:5006984/1‑128 (MQ=255)
                                                        cATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAATTAAAATTTA‑TTTTATTAAACGTATTT‑TTATTTTTAAAAAAAATTGAAAAAAAATTTAATT‑TTAA‑AAtaattttaa                                                                         >  2:5464410/1‑125 (MQ=255)
                                                             ttttttaattaa‑TTTTT‑T‑‑TTTT‑‑‑T‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAat                                                                    <  1:4953217/124‑1 (MQ=255)
                                                               tATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAATTATAATTTA‑TTTGATTAAAAGTATAT‑TTATTTTTAATAAAAATGGAAAAAAAAGTTAATTGTAAT‑AATATTTTATTTaaaaa                                                                   >  1:4831227/1‑126 (MQ=255)
                                                                  taattaa‑tTTTA‑T‑‑TTTT‑‑‑GT‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAatatat                                                                <  2:1844425/128‑1 (MQ=255)
                                                                  tAATCAA‑TTTTA‑T‑‑GCTC‑‑‑GTTTTTTTTTTTTTTTTTTTT‑‑AAAAAAATAAAATTTA‑TTTTATTAAACGTATAT‑TTATTTTTAAAAAAAATTAAAAAAAAATTTAATTTTAAT‑AAAAATTTAATTAAataa                                                                  >  2:517327/1‑127 (MQ=255)
                                                                  tAATCAA‑TTTTA‑T‑‑GCTC‑‑‑GT‑‑TTTTTTTTTTTTTTTTT‑‑TAAAAAATATTATTTA‑TTTTATTAAAAGTTTAT‑TTATTTTTAATAAAAATTTAAAATAAATTGAATTTTAAA‑AAATATTTAATTAAatatat                                                                >  1:721038/1‑128 (MQ=255)
                                                                  tAATCAA‑TTTTA‑T‑‑GCTC‑‑‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAATTTA‑TTTTATTAAACTTATAT‑TTATTTTTAATAAAAATGGAAAATAAAGTGATTTTTCAT‑AATAATTTAATTAAatatat                                                                >  2:4139020/1‑128 (MQ=255)
                                                                  tAATCAA‑TTTTA‑T‑‑GCTC‑‑‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAAAATAATTTA‑TTTTATTAAACGTATTT‑TTATTTTTAATAAAAATGGAAAATAAATTTAATTGTAAT‑AAAAATTTATTAAAatttat                                                                >  2:3491780/1‑128 (MQ=255)
                                                                     tCAA‑TTTTA‑T‑‑GCTC‑‑‑G‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAAATATAATTAA‑TTTATTAAAAGGAATTT‑TTATTTTTAAAAAAAATTAAAAAAAAATTAAATT‑TAATAAATTTTTAAATTAAatattaaa                                                              >  1:2848189/1‑124 (MQ=255)
                                                                        a‑TTTTA‑T‑‑GCTC‑‑‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATATTTTA‑TTTTATTAACCGTATTT‑TTATGTTTAATAAAAATGTAAAAGAATGTGAATTTTAAT‑AATAATTTAATTAAATATATAACAATg                                                         >  2:5104853/1‑128 (MQ=255)
                                                                            ttA‑T‑‑GCTC‑‑‑GTT‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAATTTA‑TTTTATTAAACTTATTT‑TTTTTTTTAATAAAAATTTAAAAAAAATTGAATTTTAAT‑AATAATTTAATTAAATATAAAAAAAtta                                                        >  1:4524613/1‑126 (MQ=255)
                                                                              a‑T‑‑GCTC‑‑‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAATTTA‑TTTGATTAAACTTATAT‑TTATGTTTAATAAAAATTGAAAATAAAGTTAATTTTAAT‑AATAATTTAATTAAATAAATAAAAATTTAAg                                                     >  2:1176352/1‑128 (MQ=255)
                                                                              a‑T‑‑GCTC‑‑‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATTTTTAATAAAAATTTAAAATAAATTGAATTTTAAT‑AATAATTTAATTAAATATAAAAAAAAGTaat                                                     >  1:2094711/1‑127 (MQ=255)
                                                                              a‑T‑‑GCTC‑‑‑GT‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAATTGTAAAATAAATTGAATTTAAAT‑AATAATTTAATTAAATTTATAACAATTTaat                                                     >  1:3263077/1‑127 (MQ=255)
                                                                              a‑T‑‑GCTC‑‑‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑AAAAAAATATAATTAA‑TTTTATTAAAAGTATAT‑TTATTTTTAATAAAAATGTAAAAAAAATTTAATTATCAT‑AATAATTTAATTAAATATATAAAAATTTaaat                                                    >  1:354685/1‑126 (MQ=255)
                                                                                  tttttttattttttttttttttttttttt‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATg                                                         <  2:4245153/116‑1 (MQ=255)
                                                                                          ttttttttttttttttttttt‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGtttt                                                 <  1:5276353/124‑1 (MQ=255)
                                                                                          ttttttttttttttttttttt‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGtttt                                                 <  2:2833210/124‑1 (MQ=255)
                                                                                           tttttttttttttttttttt‑‑tCAATAATATAATTTA‑TTTGATTAAAAGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTa                                                <  1:5199990/125‑1 (MQ=255)
                                                                                           tttttttttttttttttttt‑‑ATATATATATAATTTA‑TTTGATTTAACTTATAT‑TTATGTTTAATTATAATGGAAAAGTAAGTGATTTGTCAT‑TATAATTTAATTAAATATATAACAATGTAAGTTTTa                                                <  1:2384873/125‑1 (MQ=255)
                                                                                           tttttttttttttttttttt‑‑ATATAAATATAATTTA‑TTTGATTAAAAGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTa                                                <  1:3161282/125‑1 (MQ=255)
                                                                                           tttttttttttttttttttt‑‑AAATAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTa                                                <  2:1772472/125‑1 (MQ=255)
                                                                                           tttttttttttttttttttt‑‑AAAAAATTATTATTTA‑TTTGATTAAAAGTATAT‑TTATGTTTTATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTa                                                <  2:253946/125‑1 (MQ=255)
                                                                                           gttttttttttttttttttt‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTa                                                <  2:4599977/125‑1 (MQ=255)
                                                                                            ttttttttttttttttttt‑‑AATAAAATATAATTTA‑TTTGATTAAAAGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTaa                                               <  2:2759089/126‑1 (MQ=255)
                                                                                            gtttttttttttttttttt‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAAAAAAAATGGAAAATAAAGTGAATTGTAAT‑ATTAATTTAATTAAATATATAACAATGTAAATTTTaa                                               >  2:377703/3‑128 (MQ=255)
                                                                                            gtttttttttttttttttt‑‑AAAAAAATTTAATTTT‑TTTTATAAAACTTATAT‑TTATTTTTAAAAAAAATGGAAAATAAAGTTATTTTTAAT‑AAAAATTTAATTAAATTAATAAAAATTAAATTTTTaa                                               >  2:4494842/3‑128 (MQ=255)
                                                                                             cgtttttttttttttttt‑‑ACAAAAATATAATTTA‑TTTGATAAAACGTATAT‑TTATGTTTAATAAAAATTGAAAAGAAAGTAAATTTTAAT‑AATAATTTAATTAAATATATAAAAATGTAATTTTTaaa                                              >  1:899376/3‑128 (MQ=255)
                                                                                               tttttttttttttttt‑‑AAAAAAATATAATTTA‑TTTTATTAAACTTTTAT‑TTTTTTTTAATAAAAATTTAAAATAAATTTATTTTTAAA‑AATAATTTAATTAATTATAAAACAATTTAAGTTTTaaaaa                                            >  1:1470929/1‑127 (MQ=255)
                                                                                               tttttttttttttttt‑‑A‑AAAAATATAATTTT‑TTTGATTAAAAGTATAT‑TTATGTTTAATAAAAATTGAAAAGAAATTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAact                                           <  2:1243425/128‑1 (MQ=255)
                                                                                                 tttttttttttttt‑‑AATAATATATAATTTA‑TTTTATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactt                                          <  1:5452448/128‑1 (MQ=255)
                                                                                                 tttttttttttttt‑‑AAAAAAATATAATTTA‑TTTGATTAAATGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTTAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAactt                                          <  1:1005648/128‑1 (MQ=255)
                                                                                                  ttttttttttttt‑‑A‑TTTAATATAATTTT‑TTTGATTTATATTATAT‑TTTTGTTTAATAAAAATTTAAAATAAATTGAATTTTAAT‑AATTATTTAATTTAATATATAATAATGTAAGTTTTAAAacttaa                                        <  2:711269/128‑2 (MQ=255)
                                                                                                   tttttttttttt‑‑ttAAATATTTATTTTA‑TTTTATTAAAAGTTTAT‑TTATGTTTAATAAAATTTGAAAAGAAAGTGAATTGTTTT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttac                                        <  2:3970496/128‑1 (MQ=255)
                                                                                                    ttttttttttt‑‑AGAAAAATATAATTTA‑TTTGTTTAAACGTATAT‑TTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTAAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttact                                       <  2:4200994/128‑1 (MQ=255)
                                                                                                    ttttttttttt‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAacttact                                       <  2:340310/128‑1 (MQ=255)
                                                                                                      ttttttttt‑‑ATTATATTATTATTTA‑TTTTATTAATATTATAT‑TTATGTTTTATAATAATTGAAAATAAAGTGAATTTTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttt                                     <  2:3127739/128‑1 (MQ=255)
                                                                                                      ttttttttt‑‑AAAAAAATATAATTTA‑TTTGATTAAAATTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTAAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACttt                                     <  2:240710/128‑1 (MQ=255)
                                                                                                       tttttttt‑‑ATATATATATAATTTT‑TTTGATTAAACTTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACtttt                                    <  2:1509213/128‑1 (MQ=255)
                                                                                                       tttttttt‑‑ACAAAAATAAATTTTA‑TTTTATTAAACTTATAT‑TTTTTTTTAAAAAAAATGTAAAAGAAATTTATTTGTAAT‑AATAATTTAATTAAATATTTAAAAATTTAATTTTAAAAAATTAAtttt                                    >  1:3643946/1‑128 (MQ=255)
                                                                                                        ttttttt‑‑AAAAAAATATAATTTA‑TTTTATTAAACGTATAT‑TTTTTTTTTAAAAAAATTGAAAAAAAAATTAAATGAAAT‑AAAAATTTAATTAAATAATAAAAAATTTAATTTTTaaaaatatattttt                                   >  2:4347713/1‑118 (MQ=255)
                                                                                                         tttttt‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTTTTTTTAATAAAAATGGAAAATAAATTGAATTGTAAT‑AATAATTTAATTAAATATATAAAAATGTAATTTTTAAAACTTACtttttt                                  >  1:131108/1‑128 (MQ=255)
                                                                                                          ttttt‑‑ACAAAAATATAATTTA‑TTTTATTAAACGTATAT‑TTATGTTTAATAAAAATGTAAAATAAATTTAATTGTCAT‑AATAATTTAATTAAATATATAACAATGAAATTTTTAAAAATTAAttttttt                                 >  1:1798854/1‑127 (MQ=255)
                                                                                                          ttttt‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTg                                 <  1:4742377/128‑1 (MQ=255)
                                                                                                           tttt‑‑AAAAAAATATAATTTT‑TTTTTTTAAACGTATAT‑TTATTTTTAAAAAAAATGGAAAAAAAATTTAATTTAAAT‑AATAATTTAATTAAATATTAAAAAATTTATATTTTAAAAATTAAtttttttt                                >  2:4669991/1‑126 (MQ=255)
                                                                                                           tttt‑‑AAAAAAATATAATTTA‑TTTTATTAAACGTATTT‑TTTTTTTTAATAAAAATGGAAAATAAATTTAATTTTAAT‑AATATTTTAATTAAATATATAAAAATTTAATTTTTAAAAATTAAtttttttt                                >  1:1224063/1‑126 (MQ=255)
                                                                                                                   atatatatTATTTA‑TTTTTTTAAAATTTTTT‑TTATGTTTAATAAAAATGTAAAAGAAATTGAATTGTAAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTtttat                          <  2:1050703/124‑1 (MQ=255)
                                                                                                                    aaaaTATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTtttatt                         <  1:4179279/128‑1 (MQ=255)
                                                                                                                     taaTATAATTTA‑TTTGATTAAAAGTATAT‑TTATTTTTAATAAAAATTGAAAAGAAATTGAATTTTAAT‑AATAATTTAATTAAATATATAAAAATGTAAGTTTTAAAACTTACTTTTTTGTTtttattt                        <  1:1128180/127‑1 (MQ=255)
                                                                                                                     aaaTATAATTTA‑TTTGATTAAAAGTATAT‑TTATGTTTAATAAAAATGGATAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTtttattt                        <  1:5139219/128‑1 (MQ=255)
                                                                                                                      aaTATTTTTTA‑TTTGATTAAATTTATAT‑TTATGTTTAATAAAAATGTAATATAAAGTGAATTGTAAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTtttattta                       <  2:2099835/128‑1 (MQ=255)
                                                                                                                           aaTTTA‑TTTGATTAAAAGTATAT‑TTATGTTTAATAAATATGGAATAGAAAGTGAATTGTAAT‑AATAATTTAATTTAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTa                  <  2:840012/128‑1 (MQ=255)
                                                                                                                             ttta‑tttGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTaaa                <  2:5264983/128‑1 (MQ=255)
                                                                                                                              tta‑tttGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTaaaa               >  1:5342479/1‑128 (MQ=255)
                                                                                                                                  tttGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTTAAACaa            >  2:570088/1‑128 (MQ=255)
                                                                                                                                  tttGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaa            >  2:3004897/1‑128 (MQ=255)
                                                                                                                                  tttGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaa            >  1:297865/1‑128 (MQ=255)
                                                                                                                                  tttGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaa            >  2:4840175/1‑128 (MQ=255)
                                                                                                                                  tttGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AAAAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaa            >  2:1606462/1‑128 (MQ=255)
                                                                                                                                   ttGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaa           >  2:2255548/1‑128 (MQ=255)
                                                                                                                                   ttGATTAAAATTTTAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGTATTGTTAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaa           <  2:1437704/128‑1 (MQ=255)
                                                                                                                                    tGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAATAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTAGTTTTTATTTACTATAAAACaaaa          >  2:4417294/1‑128 (MQ=255)
                                                                                                                                     gATTAAATGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACaaaaa         <  1:4347591/128‑1 (MQ=255)
                                                                                                                                        tAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACTATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAaag      <  1:4123433/128‑1 (MQ=255)
                                                                                                                                         aaaaGTATAT‑TTATGTTTAATTAAAATGTAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAaaga     <  2:2924853/128‑1 (MQ=255)
                                                                                                                                           aCGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATAGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAATCAAAAAaagaag   >  2:3684116/1‑128 (MQ=255)
                                                                                                                                            cGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAagaaga  >  2:4925125/1‑128 (MQ=255)
                                                                                                                                            |                                                                                                                                 
AAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAA‑TTTTA‑T‑‑GCTC‑‑‑G‑‑‑TTTTTTTTTTTTTTTTT‑‑ACAAAAATATAATTTA‑TTTGATTAAACGTATAT‑TTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCAT‑AATAATTTAATTAAATATATAACAATGTAAGTTTTAAAACTTACTTTTTTGTTTTTATTTACTGTAAAACAAAAAAAGAAGA  >  CP016816/420151‑420405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑