Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,2500T.67.4% 2094.7 / inf 1718intergenic (+214/‑328)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base T (245/306);  new base . (797/342);  total (1052/666)
Fisher's exact test for biased strand distribution p-value = 1.31e-23
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 2125 total aligned reads displayed.

ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTA‑AAAGTAATACTAAAATTATTTAATGTTAATTAAAAC  >  CP016816/165123‑165377
                                                                                                                                 |                                                                                                                                
 taataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑tt                                                                                                                                 >  1:4079794/1‑128 (MQ=255)
  aataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAATAATTAATTTGAACTTGTAAAAAATAGC‑ttt                                                                                                                                >  2:3530650/1‑128 (MQ=255)
    attttAGTTTCATTAAATTTTTGCACTTGTATGAATTAGTTATAAACTAAAACAATTATCTTTTTATATATTTTTTTTATATGCAAA‑TTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGC‑ttttt                                                                                                                              <  2:314938/126‑1 (MQ=255)
        tAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATTTTCAAA‑TTTTTAAAAAATTAATTTGAACTTTTAAAAAATATA‑ttttttttt                                                                                                                          >  2:1025823/1‑128 (MQ=255)
             tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑tttttttttttttt                                                                                                                     >  2:3414389/1‑128 (MQ=255)
               aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑tttttttttttttttt                                                                                                                   >  1:5094172/1‑128 (MQ=255)
               aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGAATATGCAAA‑TATTTAAAAAATTAATATGAACTTATAAAAAATAGA‑atattttatttttttt                                                                                                                   >  1:1810254/1‑128 (MQ=255)
               aTTAATTTATATCAATTTTTTTTATTATTAATAAAATAAAAATAATTTATTTTTTTTTTTTTTTTTTATTTTCAAA‑TTTTTTAAAAATTAATTTTAACTTTTTAAAAAAACC‑tttttttttttttttt                                                                                                                   <  1:2161777/128‑1 (MQ=255)
                    tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑tttttttttttttttttatta                                                                                                              >  1:857610/1‑124 (MQ=255)
                    tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑ttttttttttttttttaaatt                                                                                                              >  1:1887864/1‑123 (MQ=255)
                     ttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑ttttttttttttttttaaaatg                                                                                                             >  2:2541436/1‑122 (MQ=255)
                       ttCGCATTTTTATGTATTATTAAGAAAATAAAAATATTATCTTTTTATATATTTTTTGTTTATTCAAA‑TTTTTAAAAAATTAATTTTAACTTTTAAAAAATATC‑TTTTTTTTTTTTTTTTtataatgg                                                                                                           <  2:247665/127‑5 (MQ=255)
                       aTCGCACTTGTATTTATTATTAATAAAATAAAAATATTATATTTTTAGAATATTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTTTACTTGTAAAAAATAGC‑‑ATTTTTTTTTTTTTTTTTATAATg                                                                                                          <  1:5273065/128‑1 (MQ=255)
                        tCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATATTTTTAGATATTTTTTATATAAGCAAA‑TTTTTAAAAAATTAATTAGAAATTGTAAAAAAAAG‑‑ATTTTTTTTTATATTTTTTATAAtaa                                                                                                         >  2:4064050/1‑126 (MQ=255)
                         cGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑ttttttttttttttttatattggaaa                                                                                                         >  1:686480/1‑118 (MQ=255)
                           gtcTTGTATTTATTCCTAAGAAAATACAACTATTAAATTGTTTTATATTTTTTGTTTTTTAACA‑TTTTTATAAAATTAATTTGAACTTTTCAACATTA‑C‑‑ATGTTTTTTTTTTTTTTTATAATGGAAat                                                                                                     <  1:4927233/126‑1 (MQ=255)
                             cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTatattgtaaatat                                                                                                     >  2:1431661/1‑119 (MQ=255)
                             cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTtaatgtaaatat                                                                                                     >  2:268309/1‑118 (MQ=255)
                             cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAatat                                                                                                   >  2:4494094/1‑128 (MQ=255)
                              ttGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATTTAAAtata                                                                                                  >  1:1106049/1‑128 (MQ=255)
                              atttatttattattAACAAAATAAATATTTAATCTTTTTTTTTATTTTTTTTATTTTGAAA‑TTTTTAAAAAATATATTTGAAATTGTAAAAAA‑ATC‑‑CTTTTTTTTTTTTTTTTTATAATGGAAAtata                                                                                                  <  2:2136820/120‑1 (MQ=255)
                                 tatttattattAATAAACTAAAAATATTATCTTTTTAGATATTTTTTTTTTATTCAAA‑TTTTTAAAAAATTAATTTGTACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                              <  2:1936335/123‑1 (MQ=255)
                                 tatttattattAATAAAATAAAAATTTTATTTTTTTTTATTTTTTTTTTATATGCAAA‑TTTTTTAAAAATTAATTTTAACTTTTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                              <  2:184477/123‑1 (MQ=255)
                                 tATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTTATAATGTAAATATAAAttt                                                                                             >  1:1619416/1‑128 (MQ=255)
                                  tttaaTTATTAATAAAATTAAAATATTATATTTTTAGATATTTTTTTTATATTCAAA‑TTTTTAAAAAATTAATTTGAAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                              <  1:944225/125‑1 (MQ=255)
                                        tAGTAAAAAACTAAAACTAATATCTTTTTAGATATTTTTTGTATATTCAAA‑ATTTTAAAAAATTAAATTGAACTTGTTAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                        <  1:1525335/128‑1 (MQ=255)
                                          gtactaaaataaaaataTTATATTTTTATATATTTTTTGTATATTCAAA‑TTTTTAAAAAAATAATTTGAACTTTTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAt                                                                                      <  1:5546010/123‑1 (MQ=255)
                                          gTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTatttattt                                                                                    >  1:4426835/1‑128 (MQ=255)
                                            aattaaataaaactaTTTTTTTTTTATTTATTATTTGTATTTTTAAA‑TTTTTAAAAATTTATTTTGAACTTTTAAAAAAT‑‑T‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAttt                                                                                    <  2:3657156/121‑1 (MQ=255)
                                            aataaaattaaaataTTTTTTTTTTATATATTTTTTGTATATTTAAA‑TTTTTAAAAAATTAATTTTTATTTTTTAAAAATTTC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAt                                                                                      <  1:78392/119‑1 (MQ=255)
                                               aaactaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTTGTTAttt                                                                                    >  2:650206/1‑128 (MQ=255)
                                               aaactaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAAAATAAAATTTAGTTAtttttt                                                                                 >  2:4716249/1‑126 (MQ=255)
                                               aaactaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATTAAAATAAAAATTTTATTTATtttttt                                                                                >  2:110111/1‑128 (MQ=255)
                                               aaactaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTAAAATGTAATAATAAATTTTAGTTAtttttt                                                                                 >  1:2943245/1‑126 (MQ=255)
                                                aactaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTT‑‑TAATGTAAATATAAATTTTAGGTAttttttg                                                                                >  2:2952507/1‑125 (MQ=255)
                                                  ctaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATATTGTAAATTAAAATTTTA‑GTATttttttttt                                                                             >  1:2843161/1‑125 (MQ=255)
                                                  ctaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATTTAAATTTAAATTTTATTTATtttttttt                                                                              >  1:3872597/1‑126 (MQ=255)
                                                  ctaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAATAAAAATTTTAGGTATtttttttt                                                                              >  2:1742693/1‑126 (MQ=255)
                                                  ataaaaataTTTTGTTTTTTTTTATTTTTTTTATATTTAAA‑TTTTTAAAAAATTAATTTTAAATTTTTAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTtgttgt                                                                              <  1:2347288/127‑1 (MQ=255)
                                                   taaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTT‑TATTGAAAAAATAAATTTTATTTATtttttttt                                                                              >  1:5213274/1‑126 (MQ=255)
                                                    aaaattaTTTTTTTTTTAGATATTTTTTGTAATTTTAAA‑TTTTTAAAAAATTAATTTGTACTT‑TTTAAAAT‑‑‑‑TTCTTTTTTTTTTTTTTTTATAATGGAAATATAATTTTTAGGTATTTTGTTGTCTaa                                                                          <  2:1520091/128‑1 (MQ=255)
                                                     aaaataatttgtttttATTTTTTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTTAACTTTTAAAAAAT‑‑T‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTa                                                                           <  2:2814523/117‑1 (MQ=255)
                                                      aaattttttttttttATTTTTTTTTTTTTTATTAAAA‑TTTTTTAAAAATTAATTTTAAATTGTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTaa                                                                          <  1:3776514/118‑1 (MQ=255)
                                                       actaTTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTAAAATTTAAATATAAATTTTAATTATTTTTTTTTATaatt                                                                        >  1:3706234/1‑126 (MQ=255)
                                                       actaATATCTTTTTATTATTTTTTTGTATATTCAAA‑TTTTTAAAAAATTAATTTTAACTTTTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAg                                                                         <  2:4800344/128‑1 (MQ=255)
                                                       actaATATATTTTTTTATATTTTTTTTATATTCAAA‑TTTTTAAAAAATTAATTTGAAATTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGt                                                                        <  1:4600359/128‑1 (MQ=255)
                                                         tattatCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTATTTTATTATGTAAATAAAAATTTAATTTATTTTTTTGTATaaa                                                                         >  2:3258376/1‑127 (MQ=255)
                                                         tattatCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATATTGAAAAAATAAATTTTATTTATTTTTTTTTATAATTa                                                                       >  2:1617089/1‑128 (MQ=255)
                                                         tattatCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATTTATTTTTTTTTATAATTa                                                                       >  1:2554053/1‑128 (MQ=255)
                                                          attatCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAAAATAAATTTTAGTTATTTTTTTGTCTAAGTa                                                                       >  1:4236422/1‑128 (MQ=255)
                                                          attatCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATTTTTTTTTCTAATTAt                                                                      >  1:3219963/1‑128 (MQ=255)
                                                           ttatCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAATTTAAATTTTTGTTATTTTGTTGTATaatttaa                                                                     >  2:5220871/1‑123 (MQ=255)
                                                           ttatCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATATTGAAATTATAAATTTTATTTATttttttataaatttttat                                                                    >  2:5319546/1‑116 (MQ=255)
                                                            tatTTTTTTAGATATTTTTTTTATATGAAAA‑TTTTTAAAAAATTAATTTTAACTTTTAAAAAAAAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCt                                                                    <  1:4301946/128‑1 (MQ=255)
                                                             atCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGAATTTttttgtaaaattataaaa                                                                  >  1:2735106/1‑116 (MQ=255)
                                                              tCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTTTTTTGTTGTCTAAGTAtaaaa                                                                  >  2:4904761/1‑124 (MQ=255)
                                                               cTTTTTAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGAAAATATAAATTTTAGTTATTTTTTTTTCTAAGTATATaaa                                                                 >  1:5017119/1‑128 (MQ=255)
                                                                 ttttAGATATTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTTTTTTGTTGTCTATGTATCTaaaaaa                                                              >  2:1233166/1‑128 (MQ=255)
                                                                  gttttttatTTTTTTTTTATTTAAA‑TTTTTAAAAAATTAATTTTATAATTTTAAAAAT‑‑T‑TTTTTTATTTTTTTTTTTTATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaa                                                              <  1:3611770/122‑1 (MQ=255)
                                                                    tatatatTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGC‑‑‑‑‑‑‑TTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGaa                                                        <  2:5078595/125‑1 (MQ=255)
                                                                      ttttttttttttATATTTAAA‑TTTTTAAAAAATTAATTTTTAATTTTTAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                          <  2:2008358/124‑1 (MQ=255)
                                                                       ttatTTTTTTTATATTTAAATTTTTAAAAAAATTAATTTTAATTTTTAAAAAA‑A‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa                                                         <  1:4662419/127‑1 (MQ=255)
                                                                       atatTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTATTTTGTTTTCTAATTATATAAAAAAATATaa                                                        >  1:1289371/1‑128 (MQ=255)
                                                                         atTTTTTGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTAAAAAAAAAAATATAAATTTAATTTATTTTTTTATATAATTAACaaaaaaaaaaaaaa                                                       >  2:3890580/1‑128 (MQ=255)
                                                                           tttttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTATTTTTTTTTATAAGTTTCTAAAAAAATAaaaatg                                                     >  2:304033/1‑126 (MQ=255)
                                                                             ttttTATATTAAAA‑TTTTTAAAAAAATAATTTTTATTTTTTAAAAATAG‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGa                                                    <  2:2240571/128‑1 (MQ=255)
                                                                              ttGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGAAAATATAATTTTTAATTATTTTTTTGTATAAGTATCTAAAAAAATATaaattaaa                                                  >  1:4151668/1‑123 (MQ=255)
                                                                               ttttttttaaaa‑TTTTAAAA‑AAATAATTTTTATTTGTTAAAAAAA‑‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaaa                                                <  2:804650/119‑1 (MQ=255)
                                                                               tttataTTCAAA‑TTTTTAAAAAATTAATTTTAACTTTTAAAAAATA‑‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaa                                                 <  1:119717/126‑1 (MQ=255)
                                                                               tGTATATGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATATTTTAAATATAAATTTTAGGTTTTTTGTTTTAAAATTTTAAAAAAAAATATAAAGaaaa                                                  >  2:876227/1‑128 (MQ=255)
                                                                                     tGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTATTTTTTTTTTTTTATATTTTTATAAAAAAATAAAAATTaaaaatt                                              >  1:1379149/1‑126 (MQ=255)
                                                                                     tGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATTTATTTTTTTTTATAATTATATAAAAAAATATAAAGTaaaaaaatt                                            >  1:3982914/1‑125 (MQ=255)
                                                                                     tGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAAAAAAAATTTTAGGTTTTTTTTTGTATAATTATATAAAAAAATAGAAAGTaaaaaaatt                                            >  1:304412/1‑125 (MQ=255)
                                                                                     tGCAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTAAAATGGAAATAAAAATTTTAGTTATTTTTTTGTAAAATTATCAAAAAAAATAAAAAGTAAAAAataa                                            >  2:380257/1‑127 (MQ=255)
                                                                                       cAAA‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATTTAATTATAAATTTTAGTTATTTTTTTGTATAATTATATAAAAAAATATAAAGTAAAAAATAtttt                                         >  1:3414272/1‑126 (MQ=255)
                                                                                         aa‑TTTTTAAAAAATTAATTTTAAATTGTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTa                                       <  2:5443053/128‑1 (MQ=255)
                                                                                         aa‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATGTATTTTTTTGTATAATTATATAAAAAAATTAAAAGTAAAAAATATTGTTat                                      >  1:5447710/1‑127 (MQ=255)
                                                                                         aa‑TTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑‑TTTTTTTTTTTTTTATAATGAAAATATAAATTTTAGGTATTTTTTTTTCAAAGTATAAAAAAAATTATAAAGTAAAAAATATTTTTa‑aaa                                   >  1:2639936/1‑128 (MQ=255)
                                                                                            ttttTAAAAAATTAAATTGAACTTGTTAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTa‑aaa                                   <  1:4518528/128‑1 (MQ=255)
                                                                                                ttaaaaattaattTTAAATTTTTAAAAAT‑TT‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTA‑AAAGt                                 <  1:1747318/123‑1 (MQ=255)
                                                                                                taaaaaaTTAATTTTAAATTTTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTA‑AAAGTa                                <  1:332458/127‑1 (MQ=255)
                                                                                                taaaaaaTTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTT‑‑‑TAATGGAAATATAAATTTTAGGTTTTTTGTTGTCTAAGTATATAAAAAAATATAAAGGAAAAAATATTGTTA‑AAATTat                               >  2:4272393/2‑127 (MQ=255)
                                                                                                  aaaaattaattTTAAATT‑TAAAAAATA‑‑‑ATTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATCTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTA‑AAAGTAATa                             <  1:4736224/125‑1 (MQ=255)
                                                                                                     aattaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTAT‑‑TGTAAATA‑AAAATTTATGTATTTTTTTTTTTAATTTTATTAAAAAATTTTAAGTTTAAAAAATTTTTA‑TAAATAATATTa                          >  2:2384011/1‑128 (MQ=255)
                                                                                                     aattaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTAAGGTATTTTGTTGTCTAATTTTATAAAAAAATAGAAAGAAAAAAATATTGTTA‑AAAGTAATaat                           >  2:4173341/1‑126 (MQ=255)
                                                                                                      attaattTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTT‑TATTGTAAATTTAAATTTTAGGTATTTTGTTGTCAAAGTATCTAAAAAAAAAGAAATGTAAAAATATTGTTA‑AAATAAATACt                           >  2:4998429/1‑128 (MQ=255)
                                                                                                      attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTTTTTTTTTTTAAATTTATATAAAAAAATTTAAATTAAAAATTTTTTTTA‑AATTTAATACt                           >  1:226052/1‑128 (MQ=255)
                                                                                                      attaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATATTGTAATAAAAATTTTTATGTATTTTTTTGGAT‑AGTTTAAAAAAAAATAAAAAAGAAAAAATATTTTTT‑AAATTaaaaaaaa                         >  1:2048897/1‑122 (MQ=255)
                                                                                                       ttaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTTAGGTATTTTGTTTTATAATTATCTAAAAAAATATAAATTAAAAAATATTTTTA‑TAAGtaataataa                         >  1:625179/1‑128 (MQ=255)
                                                                                                         aaatttaaattGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTA‑AAAGTAATACTAAAat                      <  2:441338/119‑1 (MQ=255)
                                                                                                             tGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTA‑AAAGTAATACTAAAATTAttt                 <  2:4574285/128‑1 (MQ=255)
                                                                                                               aaCTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATTAAAATTTTTGTTATTTTGTTGTATAAGTATATAAAAAAATATAATTTAAAAAAAATTGTTA‑AATTTAAAAATAAATTAAttt                 >  1:5369746/1‑128 (MQ=255)
                                                                                                                aCTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGGTATTTTTTTTTATAATTATATAAAAAAAAAAAAAGTAAAAAATATTTTTA‑AAATTAATAATAAAattattaa                >  1:1971095/1‑126 (MQ=255)
                                                                                                                 cTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTT‑‑‑‑TAATGGAAAATAAAATTTTATTTTTTTTTTTGTAAAATTAAATAAAAAAATAAAAATGAAAAAAATTTTTTA‑AAATTAAAAAAAAAATAAATTAAtt             >  2:557913/1‑127 (MQ=255)
                                                                                                                     tAAAAAATAGCTTTTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTTATTTTTTTTTTTTATAATTTTATAAAAAAAAATAAAGGAAAAAATATTGTTA‑AATTAAATAATAAAATTATTTAAt              >  1:3515339/1‑128 (MQ=255)
                                                                                                                     tAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAATTATAAATTTTAGGTTTTTTGTTTTATAATTTTATAAAAAATTATAAATTAAAAAATATTTTTA‑AAATTAATAATAAAATTATTTAAtttt           >  1:101061/1‑128 (MQ=255)
                                                                                                                     tAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGGAAATTTAAATTTTTGGTTTTTTGTTTTGTATGTATGTAAAAAAATAGAAAGGAAAAAATTTTGTTA‑AAATTAATAATAAAATTATTAAAtttt           >  1:2446470/1‑128 (MQ=255)
                                                                                                                      ttttaaaaaattttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTA‑AAAGTAATACTAAAATTATTTAATg             <  1:4831360/117‑1 (MQ=255)
                                                                                                                      aaaaaaTAGC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTATTTATTTTTTTTTCTAATTATATAAAAAAATAGAAAGGAAAAAATTTTTTTA‑ATTGTATTAATAAATTTATTTAAtttt           >  1:314265/1‑128 (MQ=255)
                                                                                                                        aaaaTAGC‑‑TTTTTTTTTTTTTTTTTTA‑AATTGAAATAAAAATTTTAAGTTATTTTTTTTGAAAATAATAAAAAAAAAAAAAATGAAAAAATATTTTTATAATGAAATATAAAAATTTTTTatgataaa         >  2:1337124/1‑121 (MQ=255)
                                                                                                                                 |                                                                                                                                
ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAA‑TTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTA‑AAAGTAATACTAAAATTATTTAATGTTAATTAAAAC  >  CP016816/165123‑165377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑