Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4770CA46.4% 510.8 / 255.9 631intergenic (+255/‑420)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (184/144);  new base A (75/209);  total (264/367)
Fisher's exact test for biased strand distribution p-value = 1.00e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 720 total aligned reads displayed.

AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATAT  >  CP016816/202350‑202603
                                                                                                                                 |                                                                                                                               
attttgtGAAGTTTTTGTAAATAATAGTGTTATTTTTAATTAAAATACCATAAAATTAATAATTCTTATAAAGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAc                                                                                                                                 <  2:2128791/123‑1 (MQ=255)
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAc                                                                                                                                 <  2:4784512/128‑1 (MQ=255)
 agtagtTAAGTTATTGTAAATAATAGATTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTTATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACa                                                                                                                                <  1:944238/128‑1 (MQ=255)
 agtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACa                                                                                                                                <  1:2021942/128‑1 (MQ=255)
  gtattGAATTTAGTGTAAATAATATAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACaa                                                                                                                               <  1:3621506/128‑1 (MQ=255)
   tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAATAAAAAAAAAAAAAt                                                                                                                              >  2:5156458/1‑128 (MQ=255)
    agtGAAGTTATTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                             <  1:5166369/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                             >  2:4536405/1‑128 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAAta                                                                                                                             >  1:4461665/1‑127 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATc                                                                                                                             >  2:3182835/1‑128 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTATTTATATTTTTATCTTCACAAATAAAAAAAAAACAAta                                                                                                                             >  1:4503267/1‑127 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTAAAATTTATATCCTCTTGATCTATTTTTTTATTTAATTATATTAACAAATAaaaaaaaaaaaaaa                                                                                                                             >  1:1444315/1‑126 (MQ=255)
    agtGAAGGTAGTGTAAATAATATAGTTAAGGTTAATTAAAATACCATAAAATTAATAATTCTTATTATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                             <  2:2931558/128‑1 (MQ=255)
     gttaaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAAATTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcc                                                                                                                            <  2:5346363/125‑1 (MQ=255)
     gtGAAGTTTTTGTATATAATATTGTTTATGTTAATTAATATATAATTAATGTAATATTTCTTTTTATGTATATAATCGGGTTCTATTTTTTTATTTGTTTTTCTTCACAAATAAAAAAAAAAACAATc                                                                                                                             <  2:3450739/128‑1 (MQ=255)
     gtGAAGTTTTTGTAAAATATATAGTTAAGGTTAATTATAATACCAATAACTTAATAATTCTTATAATGTAGAACCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcc                                                                                                                            <  2:2552386/128‑1 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTATATCTATTTTTTTATTTGTTTATCTTAACAAATAAAAAAAAAACAAtaa                                                                                                                            >  2:4632619/1‑126 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcc                                                                                                                            <  2:4587239/128‑1 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTTCACAAATAAAAAAAAACAATccc                                                                                                                           >  2:678912/1‑128 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATTTATATCCTCTTTATCTATTTATTTATTTGATTATCTTCAAAAATAAAAAAAAAAAAAtaa                                                                                                                            >  1:2857005/1‑126 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTAAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATATGTTTATCTACACAAATAAAAAAAAAAAAATca                                                                                                                            >  2:1225119/1‑127 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGATAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATAATCTTTATCTATTTTTTAATTTATTTATATTCAAAAATAAAAAAAAAACAAtaa                                                                                                                            >  2:2036456/1‑126 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAATcc                                                                                                                            >  2:2851590/1‑128 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATCTAGATCCTCGTGATCTATATTTTTATTTTTTTATCTTAAAAAATAAAAAAAAAACaaaaca                                                                                                                           >  2:1162656/1‑124 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATTTAGAAACTCTTAATCAATTTTTATATTAAATTATAAAAAAAAATAAAAAAAAAAAAAtaaa                                                                                                                           >  2:2412632/1‑125 (MQ=255)
       gAAGTTATTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcccc                                                                                                                          <  2:3933896/128‑1 (MQ=255)
       gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcccc                                                                                                                          <  1:4307316/128‑1 (MQ=255)
        aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATcaact                                                                                                                         >  1:2702144/1‑124 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTATTTTATCTTCACAaaaaaaaaaaaaaaaaatacactt                                                                                                                       >  2:2768071/1‑120 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATc                                                                                                                             <  2:2153908/122‑1 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCtta                                                                                                                       <  1:1361606/128‑2 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCAAAAAAAAAAAAAAAAAAATccaataa                                                                                                                       >  2:628910/1‑123 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTATTATTTTTTTATCTTCACAAATAAAAAAAAAACAAtacaataa                                                                                                                       >  2:5523373/1‑121 (MQ=255)
           ttAGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTAAATAATTCTTATAATGTAAATCATCGTTAACTATATTTTTATTTATATAAATTAACAAATAAAAAAAAAAAAAAACCCttaa                                                                                                                      >  2:1901925/1‑126 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCATCTTGATCTATTTTTTTATTTTTATATCTACAAAAATAaaaaaaaaaaaaaaacaaaaa                                                                                                                      >  2:2298918/1‑119 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTAAAAATTTATATAATCTATATAAATTTTTTAATTTTTAAAAATTCAAAAAAAAAAAAAAAAAAATcaaaaaaa                                                                                                                      >  1:5408964/1‑121 (MQ=255)
            tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACaaaacccataaa                                                                                                                     >  2:495465/1‑118 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCATATAATGTAGATCCTCGTGATCTATTTATTTATTAGTTTATCTTCACTAATAAAAAAAAAACAATcaaataaaaa                                                                                                                    >  1:4690961/1‑119 (MQ=255)
               tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAACAATcaacataaaaat                                                                                                                  >  1:579692/1‑117 (MQ=255)
                   aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAATAAAAAAAAAACAAAACCCTAaaaaaaaaaa                                                                                                             >  1:530627/1‑126 (MQ=255)
                       ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACCACTT‑‑‑AAAAATaaaaaaaa                                                                                                      >  2:4863054/1‑128 (MQ=255)
                        taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaa                                                                                                      >  2:4326609/1‑128 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATAAAC‑‑ATAAAAATTaaaaaaaaaaaaa                                                                                                 >  1:1275569/1‑128 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑ATAAAAATTaaaaaaaaaaaaa                                                                                                 >  2:5251497/1‑128 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCACAT‑‑‑AAAAATaaaaaaaaaaaaaa                                                                                                >  2:3039156/1‑128 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAACAAT‑‑AAAATTAAAAATTaaaaaaaaaaaaa                                                                                                 >  1:710507/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAAACAC‑‑‑ATAAAAATTtaaaaaaaaaaaaaaa                                                                                              >  2:1486742/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAAAATAAAC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                               >  1:5507143/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCAACGTGATCTAATTATATATATATTAAAATTCACAAATAAAAAAAAAACAAACAC‑‑‑AAAAAAAATaaaaaaaaaaaaaaaa                                                                                              >  2:80064/1‑128 (MQ=255)
                               aaGGTTAATTAAAAAACCATAAACTTAATAAATCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTATCTACACAAATAAAAAAAAAACAATCAAC‑‑TTAAAAATTaaaacaaaaaaaaaa                                                                                               >  2:576089/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATATTTTTATTAGTTTATCTTCACAAATAAAAAAAAAAAAAT‑‑AAAATTAAAAATTaaaaaaaaaaaaaaaaa                                                                                             >  1:1734222/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATAATCTTGATCTATATTTTTATTTTTTTATCTTCACAAATAAAAAAAAAACAAAACC‑‑AATAAAAATTaaaaaaaaaaaaaaaaa                                                                                             >  1:621166/1‑128 (MQ=255)
                                        taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTATTATCTTCACAAATAAAAAAAAAACAAAAACCTAaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  2:1590580/1‑127 (MQ=255)
                                         aaaaaaaaaTAAAATTAATAATTATTATAATTTATATACTCTTTATATATTTTTTTATTTTTTTATATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTaa                                                                                     <  1:262711/120‑1 (MQ=255)
                                          aaaTACCATAAACTTAATAATTCTTATAATGTAGAACCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑ATAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                    >  2:1710258/1‑123 (MQ=255)
                                           aaaaaaaTAAAATTAAAAAATATTATAATTTTTATCCTCGTGATATATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                   <  1:4828609/122‑1 (MQ=255)
                                           aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAAAAAT‑‑AAAATTAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                   >  1:1837982/1‑128 (MQ=255)
                                           aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                   >  2:4746759/1‑128 (MQ=255)
                                              aacATAAAATTATTAATTTTTATAATTTTTATCCTATTTTTTTATTTTTTTATTTTTTTATATTAAAAAATAAAAAAAAAACAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                <  2:4173594/126‑1 (MQ=255)
                                                   aaaCTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAACAATcc                                                                                                                            <  2:4682142/81‑1 (MQ=255)
                                                     aCTTAAAAATACTTATAATGTATATACTCCTGTTCTATTTTTTTATTTTTTTATCTTCAAAAATAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                         <  1:4229219/128‑1 (MQ=255)
                                                         aataatTCTATAAATTTACATCCACCTTATCTATTTTTTTATATGTTTATATTCACAAATAAAAAAAAAAAAAACCCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                   <  1:415515/128‑1 (MQ=255)
                                                         aataaaTCATATAATTTATATCCTAGTTATATATTTTTTTTTTTGTTTATATTAACAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                    <  2:5013223/128‑1 (MQ=255)
                                                          ataatTATTAAAAATTATATCCTACTTATATATTTTTTTTTTTTTTTATAAAAAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                   <  1:2450097/128‑1 (MQ=255)
                                                            taattttATATAGTATATCCACTTTATCTAATTTTTTATATTTTATAAATAAAAAAAAAAAAAAAAAAAAACCCCTTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                   <  1:3672744/123‑1 (MQ=255)
                                                             atTTTTATAATTTAAATAATAGTTATATATTTTTTTATTTTTTTATATTCAAAAATAAAAAAAAAAAAAATCACCTT‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                <  1:5067804/128‑1 (MQ=255)
                                                                           ataacTCGTTATATATATTTTTAATTTTTAAAATAAAAAAATAAAAAAAAAAAAATCCCCATAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                    <  2:1795945/124‑1 (MQ=255)
                                                                               ctctttatatATTTTTTTATTTGTTTATAATAAAAAATAAAAAAAAAAAAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                               <  1:1946531/119‑1 (MQ=255)
                                                                                 tttttattttttttttATTTTTATAAAATAAAAAAAAAAAAAAAAAAAATAAACATTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                              <  1:1144124/119‑1 (MQ=255)
                                                                                 cttgttatATTTTTTTAATTTTTTATCTACAAAAAAAAAAAAAAAAACAATCCCCTTAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                               <  1:3812429/121‑1 (MQ=255)
                                                                                 cGTTATATATTTTTTTATTTTTTTAACATAACAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  1:4741787/128‑1 (MQ=255)
                                                                                  ttttaaattttttttatttttttaAAATAAAAAAAAAAAAAAAAAAAAAACCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                               <  1:3190585/120‑1 (MQ=255)
                                                                                   ttttatatttttttattttttTATATTAAAAAATAAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  1:1909772/123‑1 (MQ=255)
                                                                                   ttattttttttttttttttttttttttCAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  2:5411127/121‑1 (MQ=255)
                                                                                    ttattttttttttatttttttaATTTAAAAAAAAAAAAAAAAAAAATCCCC‑‑ATAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                          <  2:4486707/122‑1 (MQ=255)
                                                                                    ttaaatattttttattttttaATATAAAAAAAAAAAAAAAAAAAAAACCC‑‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                         <  1:1009549/121‑1 (MQ=255)
                                                                                      tatttttttttatttttttaAATTTAAAAATAAAAAAAAAAAAAATACCATTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                          <  1:2768071/124‑1 (MQ=255)
                                                                                       atatttttttattttttTATATAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                      <  1:3034319/127‑1 (MQ=255)
                                                                                         attattTTTTTTTTTTATATTAACAAAAAAAAAAAAAAAAATCCCCATTAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                      <  1:3493182/128‑1 (MQ=255)
                                                                                          tttttttATTTGTTTATATTAAAAAAAAAAAAAAAAAAAAACACCTTTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                     <  1:1250571/128‑1 (MQ=255)
                                                                                          atttttaTTTTGTTTTAATTAACAATTAAAAAAAAAAAATTACCTAT‑‑AAAAATTTAAAAAAAAAAAAAAAAAAACTAATAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  2:3652196/127‑1 (MQ=255)
                                                                                            ttttttttttttttTATTTAAAAATAAAAAAAAAAAAATTCAATTTAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  2:26558/128‑1 (MQ=255)
                                                                                            ttttttttttttTATCTTAAAAAATAAAAAAAAAAAAAAAACCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  1:4947914/128‑1 (MQ=255)
                                                                                            tttttaatttttaaTATTAAAAAAAAAAAAAAAAAAAATACCCTAAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  1:5014241/128‑1 (MQ=255)
                                                                                            tttttATTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAACCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATGCCACATTTTATTTTTaaa                                 <  2:1389938/128‑1 (MQ=255)
                                                                                            tttttATTTTTTTTTATTCAAAAAAAAAAAAAAAAAAAACACATTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  2:5098867/128‑1 (MQ=255)
                                                                                            tttttAATTTTTTATATTAAAAAATAAAAAAAAAAAAAACACC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                  <  1:1627919/128‑1 (MQ=255)
                                                                                            tttttAATTTTTTATAATAAAAAAAAAAAAAAAAAAAAATCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                  <  1:1082156/128‑1 (MQ=255)
                                                                                             ttttttttttttATATTAAAAAAAAAAAAAAAAAAAATTCAC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                 <  1:2388256/128‑1 (MQ=255)
                                                                                                tATTTTTTTATTTTAAAAAAAAAAAAAAAAAAAATACCATTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaata                               <  1:859031/128‑3 (MQ=255)
                                                                                                  ttttttTATTTTAAAAAATAAAAAAAAAAAAATTCCC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                            <  1:4351996/128‑1 (MQ=255)
                                                                                                      ttttaatttaaaaaaaaaaaaaaaaaaaaaACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                         <  2:4041327/116‑1 (MQ=255)
                                                                                                          ttatttaaaaaTAAAAAAAAAAAAATAACATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                   <  1:4250496/120‑1 (MQ=255)
                                                                                                          tCTTCACAAATAAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAA‑‑‑TAAAAAAAAACTGATTTAATTAAAATTCCATATATTAAAACATTTTATTTTTAAAATAAAATATTTAAataa                >  1:4655036/1‑128 (MQ=255)
                                                                                                            atataaaaaaaaaaaaaaaaaaATTCAC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                   <  1:3964597/122‑1 (MQ=255)
                                                                                                                 aaaaaaaaaaaaaaaaaATCACCATAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                 <  1:3885350/127‑1 (MQ=255)
                                                                                                                 aaaaTAAAAAAAAAAAAATACATTTTAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGatatatattatgtc              <  1:2130457/127‑11 (MQ=255)
                                                                                                                       aaaaaaaaaaaaaaACCCATTAAAAATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat           <  1:4550311/128‑1 (MQ=255)
                                                                                                                       aaaaaaaaaaaaATACCATTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat           <  1:2243260/128‑1 (MQ=255)
                                                                                                                          aaaaaaaCAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAGATATTTATTAAATTACCCTATTATACACAATTTTATTTTTAAATAAAATTATTAAAAAAatatataaaaaaa    >  2:4385543/1‑122 (MQ=255)
                                                                                                                                 |                                                                                                                               
AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATAT  >  CP016816/202350‑202603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: