Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4770CA46.4% 510.8 / 255.9 631intergenic (+255/‑420)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (184/144);  new base A (75/209);  total (264/367)
Fisher's exact test for biased strand distribution p-value = 1.00e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 720 total aligned reads displayed.

AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATAT  >  CP016816/202350‑202603
                                                                                                                                 |                                                                                                                               
attttgtGAAGTTTTTGTAAATAATAGTGTTATTTTTAATTAAAATACCATAAAATTAATAATTCTTATAAAGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAAc                                                                                                                                 <  2:2128791/123‑1 (MQ=255)
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAAc                                                                                                                                 <  2:4784512/128‑1 (MQ=255)
 agtagtTAAGTTATTGTAAATAATAGATTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTTATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACa                                                                                                                                <  1:944238/128‑1 (MQ=255)
 agtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACa                                                                                                                                <  1:2021942/128‑1 (MQ=255)
  gtattGAATTTAGTGTAAATAATATAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACaa                                                                                                                               <  1:3621506/128‑1 (MQ=255)
   tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTA‑ACAAAT‑AAAAAAAAAAAAAt                                                                                                                              >  2:5156458/1‑128 (MQ=255)
    agtGAAGTTATTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATc                                                                                                                             <  1:5166369/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATc                                                                                                                             >  2:4536405/1‑128 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAAAAAta                                                                                                                             >  1:4461665/1‑127 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAAAAATc                                                                                                                             >  2:3182835/1‑128 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTATTTATATTTTTATCTTC‑ACAAAT‑AAAAAAAAAACAAta                                                                                                                             >  1:4503267/1‑127 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTAAAATTTATATCCTCTTGATCTATTTTTTTATTTAATTATATTA‑ACAAAT‑Aaaaaaaaaaaaaaa                                                                                                                             >  1:1444315/1‑126 (MQ=255)
    agtGAAGGTAGTGTAAATAATATAGTTAAGGTTAATTAAAATACCATAAAATTAATAATTCTTATTATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATc                                                                                                                             <  2:2931558/128‑1 (MQ=255)
     gttaaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAAATTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATcc                                                                                                                            <  2:5346363/125‑1 (MQ=255)
     gtGAAGTTTTTGTATATAATATTGTTTATGTTAATTAATATATAATTAATGTAATATTTCTTTTTATGTATATAATCGGGTTCTATTTTTTTATTTGTTTTTCTTC‑ACAAATAAAAAAAAAAACAATc                                                                                                                             <  2:3450739/128‑1 (MQ=255)
     gtGAAGTTTTTGTAAAATATATAGTTAAGGTTAATTATAATACCAATAACTTAATAATTCTTATAATGTAGAACCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATcc                                                                                                                            <  2:2552386/128‑1 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTATATCTATTTTTTTATTTGTTTATCTTA‑ACAAAT‑AAAAAAAAAACAAtaa                                                                                                                            >  2:4632619/1‑126 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATcc                                                                                                                            <  2:4587239/128‑1 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTTC‑ACAAAT‑‑AAAAAAAAACAATccc                                                                                                                           >  2:678912/1‑128 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATTTATATCCTCTTTATCTATTTATTTATTTGATTATCTTC‑AAAAAT‑AAAAAAAAAAAAAtaa                                                                                                                            >  1:2857005/1‑126 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTAAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATATGTTTATCTAC‑ACAAAT‑AAAAAAAAAAAAATca                                                                                                                            >  2:1225119/1‑127 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGATAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATAATCTTTATCTATTTTTTAATTTATTTATATTC‑AAAAAT‑AAAAAAAAAACAAtaa                                                                                                                            >  2:2036456/1‑126 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTATTTATTTGTTTATCTTC‑ACAAATAAAAAAAAAAACAATcc                                                                                                                            >  2:2851590/1‑128 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATCTAGATCCTCGTGATCTATATTTTTATTTTTTTATCTTA‑AAAAAT‑AAAAAAAAAACaaaaca                                                                                                                           >  2:1162656/1‑124 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATTTAGAAACTCTTAATCAATTTTTATATTAAATTATAAAA‑AAAAAT‑AAAAAAAAAAAAAtaaa                                                                                                                           >  2:2412632/1‑125 (MQ=255)
       gAAGTTATTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATcccc                                                                                                                          <  2:3933896/128‑1 (MQ=255)
       gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATcccc                                                                                                                          <  1:4307316/128‑1 (MQ=255)
        aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATcaact                                                                                                                         >  1:2702144/1‑124 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTATTTTATCTTC‑ACAaaa‑aaaaaaaaaaaaaatacactt                                                                                                                       >  2:2768071/1‑120 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATc                                                                                                                             <  2:2153908/122‑1 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                       <  1:1361606/128‑2 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTC‑AAAAAA‑AAAAAAAAAAAAATccaataa                                                                                                                       >  2:628910/1‑123 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTATTATTTTTTTATCTTC‑ACAAAT‑AAAAAAAAAACAAtacaataa                                                                                                                       >  2:5523373/1‑121 (MQ=255)
           ttAGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTAAATAATTCTTATAATGTAAATCATCGTTAACTATATTTTTATTTATATAAATTA‑ACAAAT‑AAAAAAAAAAAAAAACCCttaa                                                                                                                      >  2:1901925/1‑126 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCATCTTGATCTATTTTTTTATTTTTATATCTAC‑AAAAAT‑Aaaaaaaaaaaaaaaacaaaaa                                                                                                                      >  2:2298918/1‑119 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTAAAAATTTATATAATCTATATAAATTTTTTAATTTTTAAAAATTC‑AAAAAA‑AAAAAAAAAAAAATcaaaaaaa                                                                                                                      >  1:5408964/1‑121 (MQ=255)
            tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACaaaacccataaa                                                                                                                     >  2:495465/1‑118 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCATATAATGTAGATCCTCGTGATCTATTTATTTATTAGTTTATCTTC‑ACTAAT‑AAAAAAAAAACAATcaaataaaaa                                                                                                                    >  1:4690961/1‑119 (MQ=255)
               tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATATTC‑ACAAAT‑AAAAAAAAAACAATcaacataaaaat                                                                                                                  >  1:579692/1‑117 (MQ=255)
                   aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTC‑ACAAAT‑AAAAAAAAAACAAAACCCTAaaaaa‑aaaaa                                                                                                             >  1:530627/1‑126 (MQ=255)
                       ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAAACCACTT‑‑‑AA‑AAATaaaaaaaa                                                                                                      >  2:4863054/1‑128 (MQ=255)
                        taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑AATTaaaaaaaa                                                                                                      >  2:4326609/1‑128 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATAAAC‑‑ATAAA‑AATTaaaaaaaaaaaaa                                                                                                 >  1:1275569/1‑128 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCC‑‑ATAAA‑AATTaaaaaaaaaaaaa                                                                                                 >  2:5251497/1‑128 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCACAT‑‑‑AA‑AAATaaaaaaaaaaaaaa                                                                                                >  2:3039156/1‑128 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTATTTTTTTATATTC‑ACAAAT‑AAAAAAAAAACAAT‑‑AAAATTAAA‑AATTaaaaaaaaaaaaa                                                                                                 >  1:710507/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAAACAC‑‑‑ATAAA‑AATTtaaaaaaaaaaaaaaa                                                                                              >  2:1486742/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAAAAATAAAC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                               >  1:5507143/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCAACGTGATCTAATTATATATATATTAAAATTC‑ACAAAT‑AAAAAAAAAACAAACAC‑‑‑AAAAA‑AAATaaaaaaaaaaaaaaaa                                                                                              >  2:80064/1‑128 (MQ=255)
                               aaGGTTAATTAAAAAACCATAAACTTAATAAATCTTATAATGTAGATCCTCGTGATCTATTATTTTATTTGTTTATCTAC‑ACAAAT‑AAAAAAAAAACAATCAAC‑‑TTAAA‑AATTaaaacaaaaaaaaaa                                                                                               >  2:576089/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATATTTTTATTAGTTTATCTTC‑ACAAAT‑AAAAAAAAAAAAAT‑‑AAAATTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                             >  1:1734222/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATAATCTTGATCTATATTTTTATTTTTTTATCTTC‑ACAAAT‑AAAAAAAAAACAAAACC‑‑AATAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                             >  1:621166/1‑128 (MQ=255)
                                        taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTATTATCTTC‑ACAAAT‑AAAAAAAAAACAAAAACCTAaaaaa‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  2:1590580/1‑127 (MQ=255)
                                         aaaaaaaaaTAAAATTAATAATTATTATAATTTATATACTCTTTATATATTTTTTTATTTTTTTATATTA‑AAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTaa                                                                                     <  1:262711/120‑1 (MQ=255)
                                          aaaTACCATAAACTTAATAATTCTTATAATGTAGAACCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCC‑‑ATAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                    >  2:1710258/1‑123 (MQ=255)
                                           aaaaaaaTAAAATTAAAAAATATTATAATTTTTATCCTCGTGATATATTTTTTTATTTTTTTATATTA‑AAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                   <  1:4828609/122‑1 (MQ=255)
                                           aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATCTATTTTTTTATTTTTTTATATTC‑ACAAAT‑AAAAAAAAAAAAAT‑‑AAAATTAAA‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                   >  1:1837982/1‑128 (MQ=255)
                                           aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                   >  2:4746759/1‑128 (MQ=255)
                                              aacATAAAATTATTAATTTTTATAATTTTTATCCTATTTTTTTATTTTTTTATTTTTTTATATTA‑AAAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                <  2:4173594/126‑1 (MQ=255)
                                                   aaaCTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑‑AAAAAAAAACAATcc                                                                                                                            <  2:4682142/81‑1 (MQ=255)
                                                     aCTTAAAAATACTTATAATGTATATACTCCTGTTCTATTTTTTTATTTTTTTATCTTC‑AAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                         <  1:4229219/128‑1 (MQ=255)
                                                         aataatTCTATAAATTTACATCCACCTTATCTATTTTTTTATATGTTTATATTC‑ACAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                   <  1:415515/128‑1 (MQ=255)
                                                         aataaaTCATATAATTTATATCCTAGTTATATATTTTTTTTTTTGTTTATATTA‑ACAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                    <  2:5013223/128‑1 (MQ=255)
                                                          ataatTATTAAAAATTATATCCTACTTATATATTTTTTTTTTTTTTTATAAAA‑AAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                   <  1:2450097/128‑1 (MQ=255)
                                                            taattttATATAGTATATCCACTTTATCTAATTTTTTATAT‑TTTATAAAT‑AAAAAA‑AAAAAAAAAAAAAAACCCCTTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                   <  1:3672744/123‑1 (MQ=255)
                                                             atTTTTATAATTTAAATAATAGTTATATATTTTTTTATTTTTTTATATTC‑AAAAAT‑AAAAAAAAAAAAAATCACCTT‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                <  1:5067804/128‑1 (MQ=255)
                                                                           ataacTCGTTATATATATTTTTAATTTTTAAAATAA‑AAAAAT‑AAAAAAAAAAAAATCCCC‑ATAAAA‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                    <  2:1795945/124‑1 (MQ=255)
                                                                               ctctttatatATTTTTTTATTTGTTTATAATA‑AAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                               <  1:1946531/119‑1 (MQ=255)
                                                                                 tttttattttttttttATTTTTATAAAATA‑AAAAAA‑AAAAAAAAAAAAATAAAC‑ATTAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                              <  1:1144124/119‑1 (MQ=255)
                                                                                 cttgttatATTTTTTTAATTTTTTATCTACAAAAAAA‑AAAAAAAAAACAATCCCC‑TTAAAA‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                               <  1:3812429/121‑1 (MQ=255)
                                                                                 cGTTATATATTTTTTTATTTTTTTAACATA‑ACAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  1:4741787/128‑1 (MQ=255)
                                                                                  ttttaaattttttttatttttttaAAATA‑AAAAAA‑AAAAAAAAAAAAAAACCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                               <  1:3190585/120‑1 (MQ=255)
                                                                                   ttttatatttttttattttttTATATTA‑AAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  1:1909772/123‑1 (MQ=255)
                                                                                   ttattttttttttttttttttttttttC‑AAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                           <  2:5411127/121‑1 (MQ=255)
                                                                                    ttattttttttttatttttttaATTTA‑AAAAAA‑AAAAAAAAAAAAATCCCC‑‑ATAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                          <  2:4486707/122‑1 (MQ=255)
                                                                                    ttaaatattttttattttttaATATAA‑AAAAAA‑AAAAAAAAAAAAAACCC‑‑‑ATAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                         <  1:1009549/121‑1 (MQ=255)
                                                                                      tatttttttttatttttttaAATTT‑AAAAAT‑AAAAAAAAAAAAAATACCATTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                          <  1:2768071/124‑1 (MQ=255)
                                                                                       atatttttttattttttTAT‑ATA‑AAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                      <  1:3034319/127‑1 (MQ=255)
                                                                                         attattTTTTTTTTTTATATTA‑ACAAAA‑AAAAAAAAAAAAATCCCC‑ATTAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                      <  1:3493182/128‑1 (MQ=255)
                                                                                          tttttttATTTGTTTATATTA‑AAAAAA‑AAAAAAAAAAAAAACACC‑TTTAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                     <  1:1250571/128‑1 (MQ=255)
                                                                                          atttttaTTTTGTTTTAATTA‑ACAATT‑AAAAAAAAAA‑AATTACCTAT‑‑AA‑AAATTTAAAAAAAAAAAAAAAAAAACTAATAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  2:3652196/127‑1 (MQ=255)
                                                                                            ttttttttttttttTATTT‑AAAAAT‑AAAAAAAAAAAAAT‑TCAATTTAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  2:26558/128‑1 (MQ=255)
                                                                                            ttttttttttttTATCTTA‑AAAAAT‑AAAAAAAAAAAAAAAACC‑TTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  1:4947914/128‑1 (MQ=255)
                                                                                            tttttaatttttaaTATTA‑AAAAAA‑AAAAAAAAAAAAATACCC‑TAAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  1:5014241/128‑1 (MQ=255)
                                                                                            tttttATTTTTTTTTTTTA‑AAAAAA‑AAAAAAAAAAAAAAAACCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATGCCACATTTTATTTTTaaa                                 <  2:1389938/128‑1 (MQ=255)
                                                                                            tttttATTTTTTTTTATTC‑A‑AAAA‑AAAAAAAAAAAAAAACACATTAAAA‑AATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                   <  2:5098867/128‑1 (MQ=255)
                                                                                            tttttAATTTTTTATATTA‑AAAAAT‑AAAAAAAAAAAAAACACC‑‑TTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                  <  1:1627919/128‑1 (MQ=255)
                                                                                            tttttAATTTTTTATAATA‑AAAAAA‑AAAAAAAAAAAAAATCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                  <  1:1082156/128‑1 (MQ=255)
                                                                                             ttttttttttttATATTA‑AAAAAA‑AAAAAAAAAAAAATTCAC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                 <  1:2388256/128‑1 (MQ=255)
                                                                                                tATTTTTTTATTTTA‑AAAAAA‑AAAAAAAAAAAAAT‑ACCATTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaata                               <  1:859031/128‑3 (MQ=255)
                                                                                                  ttttttTATTTTA‑AAAAAT‑AAAAAAAAAAAAATTCCC‑‑ATAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                            <  1:4351996/128‑1 (MQ=255)
                                                                                                      ttttaatttaaaaaaa‑aaaaaaaaaaaaaaACCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                         <  2:4041327/116‑1 (MQ=255)
                                                                                                          ttatttaaaaaT‑AAAAAAAAAAAAATAACATT‑‑‑AA‑AAATT‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                   <  1:4250496/120‑1 (MQ=255)
                                                                                                          tCTTC‑ACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAA‑‑‑TAAAAAAAAACTGATTTAATTAAAATTCCATATATTAAAACATTTTATTTTTAAAATAAAATATTTAAataa                >  1:4655036/1‑128 (MQ=255)
                                                                                                            atataaaaaa‑aaaaaaaaaaaaATTCAC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                   <  1:3964597/122‑1 (MQ=255)
                                                                                                                 aaaaa‑aaaaaaaaaaaaATCACCATAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                 <  1:3885350/127‑1 (MQ=255)
                                                                                                                 aaaaT‑AAAAAAAAAAAAAT‑ACATTTT‑AA‑AATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGatatatattatgtc              <  1:2130457/127‑11 (MQ=255)
                                                                                                                       aaaaaaaaaaaaaaACCCATTAAAA‑ATAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat           <  1:4550311/128‑1 (MQ=255)
                                                                                                                       aaaaaaaaaaaaATACCATTAAAAA‑TTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatat           <  1:2243260/128‑1 (MQ=255)
                                                                                                                          aaaaaaaCAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAAGATATTTATTAAATTACCCTATTATACACAATTTTATTTTTAAATAAAATTATTAAAAAAatatataaaaaaa    >  2:4385543/1‑122 (MQ=255)
                                                                                                                                 |                                                                                                                               
AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTC‑ACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATAT  >  CP016816/202350‑202603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑