Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4860T.54.7% 280.1 / inf 468intergenic (+264/‑411)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (30/150);  new base . (98/119);  total (166/302)
Fisher's exact test for biased strand distribution p-value = 1.01e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.36e-03

Only 100 of 500 total aligned reads displayed.

AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATA  >  CP016816/202359‑202604
                                                                                                                                  |                                                                                                                      
 gTTATTGTAAATAATAGAGTTAAGGTTAATTAAAATACAACAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTTTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                       <  1:196011/128‑2 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATTATTCTTATAATGTAGATCATCATGATCTA‑TTTTTTTAATTATTTATCTTAAC‑AAAT‑AAAAAAAAAACAAACCCCtta                                                                                                                       >  1:3640581/1‑127 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                       <  1:1361606/128‑2 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAACACCtta                                                                                                                       >  1:4486707/1‑127 (MQ=255)
   tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCACCttaaa                                                                                                                     >  2:4524786/1‑125 (MQ=255)
     gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAACCCCttaaaaa                                                                                                                   >  1:4436757/1‑123 (MQ=255)
              ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAACCACTT‑‑‑AAAAATaaaaaaaa                                                                                                       >  2:4863054/1‑128 (MQ=255)
              ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATaaaaaaaa                                                                                                       >  1:693732/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATACC‑‑ATTAAAAATTaaaaaaaa                                                                                                       >  2:592336/1‑128 (MQ=255)
                agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAT‑‑‑CAAATAAAAAATaaaaaaaaaa                                                                                                     >  1:606272/1‑128 (MQ=255)
                   gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTATATTAGATTATCTTCAC‑AAAT‑AAAAAAAAAACAAACCC‑‑‑ATAAAAAATaaaaaaaaaaaaa                                                                                                  >  2:1712390/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTA‑TTTTTTTATTTTTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAAACACCTT‑‑‑AAAAATaaaaaaaaaaaaaaaa                                                                                               >  2:5014241/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTTTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCAAC‑‑‑TAAAAAATtaaaatataaaaaaaa                                                                                               >  2:4667784/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTTTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAATACCC‑‑TAAAAAAATaaaaaaaaaaaaaaa                                                                                                >  2:477425/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATATAGATCCTCGTTATCTA‑TTTATTAATTTAATTATATTCAA‑AAAT‑AAAAAAAAAACAAAACAC‑‑TAAAAAAATaaaaaaaaaaaaaaa                                                                                                >  2:291104/1‑128 (MQ=255)
                       aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTAATCTA‑TTTTTTTATTTTTTTATCTACAA‑AAAT‑AAAAAAAAAACAAACAC‑‑ATAAAAAAATaaaaaaaaaaaaaaaa                                                                                               >  2:1197292/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAATaaaaaaaaaaaaaaaaaa                                                                                             >  2:4417682/1‑128 (MQ=255)
                        ccttaattaaAATACCATAAACTTAATAATTCTTATAATGTACATACACGAGAACTA‑TTTTATAATTAGTTTATCTTAAC‑AAAA‑AAAAAAAAAACAAAAAACTAaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  2:2426548/3‑128 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                           >  1:559498/1‑128 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:4351996/1‑128 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑‑AAAAAAAAACAAACCCC‑‑‑TAAAAAATaaaaaaaaaaaaaaaaaaaaaa                                                                                         >  2:667139/1‑127 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTATATCTTAAC‑AAAT‑AAAAAAAAAACAATCACC‑‑‑AAAAAAATtaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:399708/1‑128 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTAATAGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCAC‑‑‑ATAAAAAATtaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:2752651/1‑128 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCACC‑‑TAAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:1305061/1‑128 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAACAAACAC‑‑ATAAAAAATtaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:5280482/1‑128 (MQ=255)
                            aattaaAATAAAATAAAATTATAAATTTTTATAATTTTCTTACTCGTTATTTT‑TTTTTTTATTTTTTTATATTTAA‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                          <  1:2870928/128‑1 (MQ=255)
                             attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                         >  1:2791216/1‑127 (MQ=255)
                             attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAACCC‑‑‑ATAAAAAATaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  2:2612819/1‑126 (MQ=255)
                             attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATATATTTATCTTCAC‑AAAT‑AAAAAAAAAACAAACACATaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:1983488/1‑128 (MQ=255)
                             attaaAATACCATAAACTTAATAATTCTTACAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                         >  1:5061399/1‑127 (MQ=255)
                              ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  1:4303293/1‑126 (MQ=255)
                               taaAAAACAAAAAACTTAAAAATTCTTATAATTGATATCCTCGTGATCTA‑TTTTTTTATTTGTTTAAATTCAC‑AAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaactaaa                                                                                       <  2:5105303/128‑6 (MQ=255)
                                aaaaaaaaaTAAAATTAATAATTATTATAATTTATATACTCTTTATATA‑TTTTTTTATTTTTTTATATTAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTaa                                                                                      <  1:262711/120‑1 (MQ=255)
                                aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  1:4726450/1‑124 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTAAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                    >  2:2851447/1‑128 (MQ=255)
                                    tacataaaaaataataaTTTTAATAATATACAAACTCCTGAACTT‑TTTTTTTATTTTTTTATATTAAA‑AAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                 <  1:1076287/117‑1 (MQ=255)
                                    taacATAAAATTAATAATTCTTATAATGTATATCCTCGTGATCTA‑TTTTTTTTTTTTTTTATATTAAA‑AAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                <  1:4529460/125‑1 (MQ=255)
                                     aacATAAAATTATTAATTTTTATAATTTTTATCCTATTTTTTTA‑TTTTTTTATTTTTTTATATTAAA‑AAAT‑AAAAAAAAAACAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                 <  2:4173594/126‑1 (MQ=255)
                                      ccATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAACAaaaaaaaaaa                                                                                >  2:3640120/1‑128 (MQ=255)
                                      caaaaaaaTTAATTATTATTATAATTTACATACACGTGTATTA‑TTTTTTTATTTTTTTATATTAAA‑AAAA‑AAAAAAAAAACAAAACCC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                <  1:2403585/124‑1 (MQ=255)
                                      acATAAACTTAATAAATCTTAAAATGTACAACCACGTTACCTT‑TTTTTTTATTTTTTTATATTAAC‑AAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                <  1:2317762/127‑1 (MQ=255)
                                       aaTAAAATTAAAAATTATTATAATTTATATCCTCTTTTTATA‑TTTTTTTTTTTTTTTATCTTAAA‑AAAA‑AAAAAAAAAAAAAAACCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                <  2:1883790/127‑1 (MQ=255)
                                        ataaaaaaaataatTATTAAAAATTATATCCTCGTGATCTA‑TTTTTTTATTTTTTTATATTCAC‑AAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAAAAAActc                                                                            <  1:3837453/120‑1 (MQ=255)
                                          aaaattaaaaattaTTAAAATTTAAATACATTTTATATA‑TTTTTTTTTTTTTTTAAATTAAA‑AAAA‑AAAAAAAAAAAAAAACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                          <  1:1887650/128‑1 (MQ=255)
                                          aaaaTTAATAATTATAATAATTTATTACATTGTTATTAA‑TTTTTTTATTTTTTTAAATTAAA‑AAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                          <  2:1466451/128‑1 (MQ=255)
                                          aaaCTTAAAAATTTATATAATTTAGATACTCTTTATCTA‑TTTTTTTAATTGTTTATATTCAA‑AAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                           <  1:1844438/128‑1 (MQ=255)
                                             cTTAATATATTTTATTATTTATATACTCGTGATTTATTTTTTTTATTTTTTTTTTTAAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                           <  2:4306682/128‑1 (MQ=255)
                                                               ttataTCCTTCTGATATA‑ATTTTTTATTTTTTTATTTAAAA‑AAAA‑AAAAAAAAAAAAATCCC‑‑AATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                       <  1:932586/124‑1 (MQ=255)
                                                               ttAGATCATAGTTATCTA‑TTTTTTTATTTGTTTATATTCAC‑AAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                   <  1:5155878/127‑1 (MQ=255)
                                                                    ttcaagtttatta‑tttttttattttttTAAATTTAA‑AAAA‑AAAAAAAAAAAAATACCC‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                   <  1:4889830/117‑1 (MQ=255)
                                                                    tacacttGATATA‑TTTTTTTATTTTTTTATTTTTAA‑AAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                  <  2:4722187/122‑1 (MQ=255)
                                                                     actagttataaa‑TTTTTTTATTTGTTTTAATTAAA‑AAAA‑AAAAAAAAAAAAAAAACC‑‑ATAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                 <  1:1309505/117‑1 (MQ=255)
                                                                      tcgatctttatttttttttatttttttaTAATAAA‑AAAT‑AAAAAAAAAAAAAACCCC‑‑ATAAAATAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                <  2:2281433/116‑1 (MQ=255)
                                                                      ctacttattta‑tttttttattttttTAAAATAAA‑AAAA‑AAAAAAAAAAAAAAACCC‑CATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                 <  1:4797826/119‑1 (MQ=255)
                                                                      cacttGATATA‑TTTTTTTATTTTTTTAAATTAAA‑AAAA‑AAAAAAAAAAAAATACACTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                  <  1:5474754/124‑1 (MQ=255)
                                                                       actttatatA‑TTTTTTTAATTTTTAATAATAAA‑AAAA‑AAAAAAAAAAAAAAACCC‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                <  1:1570656/120‑1 (MQ=255)
                                                                       aattGATATA‑TTTTTTTATTTTTTTAAATATAC‑AAAA‑AAAAAAAAAAAAAACCC‑‑‑ATAAAAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAAC‑AACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  1:5197218/125‑1 (MQ=255)
                                                                        ctttaTCTA‑TTTATTTATTTTTATATATTAAA‑AAAA‑AAAAAAAAAAAAATACAC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  1:2454586/124‑1 (MQ=255)
                                                                        ctgtttata‑tttttttattttttTATCTAAAA‑AAAA‑AAAAAAAAAAAAAAAACCCTT‑‑‑AAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  2:459678/121‑1 (MQ=255)
                                                                         tatatata‑tttttttattttttTAAATTAAA‑AAAA‑AAAAAAAAAACAA‑AACCATTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                              <  2:2132695/122‑1 (MQ=255)
                                                                          tttattattttttttatttttttaTATATA‑‑AAAA‑AAAAAAAAAATAAAAACCCTTTAAAATTTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACat                                              <  1:1197292/120‑1 (MQ=255)
                                                                          tttacaa‑TTTTTTTATAT‑TTTTTATTTAA‑AATT‑ATAAAAAAAAAAAATTCCA‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  1:3791137/122‑1 (MQ=255)
                                                                           ttataa‑TTTTTTTAATTTTTTATAATTAA‑AAAA‑AAAAAAAAAATAAAATACCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                             <  1:2077079/123‑1 (MQ=255)
                                                                           tatttA‑TTTTTTTATTTGTTTATATTAAA‑AAAT‑AAAAAAAAAA‑AAAAACCTTTAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  1:1926592/124‑1 (MQ=255)
                                                                            ttattttttttttatttttttaATTTAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑ATAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                           <  2:4486707/122‑1 (MQ=255)
                                                                            ttatA‑TTTTTTTTTTTTTTTAATAATAA‑AAATAAAAAAAAAAACAATACCC‑TTTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  1:3910822/125‑1 (MQ=255)
                                                                            ttaaatattttttattttttaATATAAAA‑AAAA‑AAAAAAAAAAAAAACCC‑‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                          <  1:1009549/121‑1 (MQ=255)
                                                                            aTCTA‑TTTTTTTATTTTTTTATATTCAA‑AAAA‑AAAAAAAAAAAAAACCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                           <  1:4229137/128‑1 (MQ=255)
                                                                            aTCAA‑TTTTTTTATTTTTTTAACTTAACAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                           <  1:4669371/128‑1 (MQ=255)
                                                                             tata‑tttttttattttttTATATTAAC‑AAAT‑AAAAAAAAAAAAATACCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                          <  1:4243380/126‑1 (MQ=255)
                                                                              tta‑tttttttattttttTATTTTAAA‑AAAT‑AAAAAAAAAAAAATCCCCAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                       <  1:4584659/127‑1 (MQ=255)
                                                                              taa‑TTTTTTTTTTTTTTTATCTTAAA‑AAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                      <  2:5462566/126‑1 (MQ=255)
                                                                              ata‑tttttttattttttTAT‑ATAAA‑AAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                       <  1:3034319/127‑1 (MQ=255)
                                                                               tttttttttttttttttttTATTCAC‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                      <  2:560553/125‑1 (MQ=255)
                                                                                attttttttATTT‑TTTATATTAAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                      <  1:5378082/126‑1 (MQ=255)
                                                                                 tttttttttttttttttTCTTAAC‑AAAT‑AAAAAAAAAATAATTACCTT‑‑‑AAAAATTTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                     <  1:143333/127‑1 (MQ=255)
                                                                                 tttttttttttttttTATATTATA‑AAAT‑AAAAAAAAAACAAACACC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                      <  2:4994567/127‑1 (MQ=255)
                                                                                 ttttttttATTTTTTTTTTTTAAA‑AAAA‑AAAAAAAAAAAAAT‑‑ATAATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                      <  2:730982/127‑1 (MQ=255)
                                                                                  tttttttatttttttaAATAAAA‑AAAT‑AAAAAAAAAA‑AAAAACCATTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                      <  1:1261677/128‑1 (MQ=255)
                                                                                  tttttttATTT‑TTTATTTTTAT‑AAAA‑TAAAAAAAAAAAATACC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  1:1779405/128‑1 (MQ=255)
                                                                                  tttttttAATTTTTTTTATTAAA‑AAAA‑AAAAAAAAAAAAAAACCC‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                      <  1:3540696/128‑1 (MQ=255)
                                                                                   ttttttttttttttATATT‑AA‑AAAA‑AAAAAAAAAAAAATAAACTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                  <  2:4793384/128‑1 (MQ=255)
                                                                                    ttttttttttttTATTTTAAA‑AAAT‑AAAAAAAAAA‑AATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                 <  1:4177424/128‑1 (MQ=255)
                                                                                    tttttaatttttaaTATTAAA‑AAAA‑AAAAAAAAAAAAATACCC‑TAAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  1:5014241/128‑1 (MQ=255)
                                                                                     ttttATTTTTTTAAATAAAA‑AAAA‑AAAAAAAAAAAAAACCC‑‑ATAAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAGAATTCCCTATTATACCACATTTTATTTTTaaaa                                 <  2:5394764/128‑1 (MQ=255)
                                                                                       tttttttttTATTTTTAA‑AAAT‑AAAAAAAAAAAAATAACCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                              <  2:2685580/125‑1 (MQ=255)
                                                                                        tATTTTTTTATTTTAAA‑AAAA‑AAAAAAAAAAAAAT‑ACCATTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaata                                <  1:859031/128‑3 (MQ=255)
                                                                                              tttATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATATTTTTATTAAAATTCCATTTTAAACAAATTTTTATTTTTAATATaatttttta                       >  1:4952246/1‑121 (MQ=255)
                                                                                              tttATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAA‑‑‑AAAAACAAAAAAAATTTATAAAAAATCCCTATTAAACAAAATTTTATTTTTAAAATaaaaaatataa                     >  2:3137384/1‑119 (MQ=255)
                                                                                               tttattataaaaaaT‑AAAAAAAAAAAAATCACC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                          <  1:747226/117‑1 (MQ=255)
                                                                                                 tatattaaaaaaT‑AAAAAAAAAAAAATAACATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  1:324894/119‑1 (MQ=255)
                                                                                                  taatataaaaaT‑AAAAAAAAAAAAATACCC‑‑AAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  2:4010623/120‑1 (MQ=255)
                                                                                                  attataaaaaaT‑AAAAAAAAAAAAATTCAC‑‑TTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  1:1125477/120‑1 (MQ=255)
                                                                                                   tcatccaaaaT‑AAAAAAAAAAAAAACCCC‑‑‑TAATAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                    <  2:3460609/121‑1 (MQ=255)
                                                                                                   aaaaaaaaaaa‑aaaaaaaaaaaaATCCCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                    <  2:5177988/121‑1 (MQ=255)
                                                                                                         aaaaa‑aaaaaaaaaaaaaaACCATTTAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                 <  2:1571910/127‑1 (MQ=255)
                                                                                                         aaaaT‑AAAAAAAAAAAAAT‑ACATTTT‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGatatatattatgtc               <  1:2130457/127‑11 (MQ=255)
                                                                                                                  aaaaaaaaaaTCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTa       <  2:1799571/128‑1 (MQ=255)
                                                                                                                     aaaaCAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAACCCAACCTCTTTTTCATAAATTAGACTATTTGACCACATGTTATTTTTAAAATAATATTTTGACATAATATAAAAATAatat   >  1:4332088/1‑128 (MQ=255)
                                                                                                                       aaaaaataacctttaaaatttaaaaAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAata    <  1:169978/117‑1 (MQ=255)
                                                                                                                                  |                                                                                                                      
AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTA‑TTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATA  >  CP016816/202359‑202604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑