Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,8951.T56.6% inf / inf 789intergenic (+279/+179)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base . (179/162);  new base T (354/91);  total (535/254)
Fisher's exact test for biased strand distribution p-value = 1.07e-15
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 957 total aligned reads displayed.

TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAA‑AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTATAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG  >  CP016816/203768‑204022
                                                                                                                                            |                                                                                                                                    
tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAA‑AGCCTATGTTCTAGTCTTTTTATTATACTTATCAACATTACAAAGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GT‑‑C‑‑‑TT‑g                                                                                                                                       >  1:5460101/1‑128 (MQ=255)
tttAATTTTTTTTATAAAAAAAAATAAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAA‑AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑g                                                                                                                                       >  1:4324126/1‑128 (MQ=255)
  ttaTTTTTTTTATAAAAAAAAATAAAAATTTTTAAT‑TTAAATCCATTTGTAAAAA‑AGCCTATGTTCTAGGCTTTTTTTTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑tt                                                                                                                                  <  1:2414227/126‑1 (MQ=255)
  tAATTTTTTTTATAAAAAAAAATAAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAA‑AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑tt                                                                                                                                  >  1:1916817/1‑128 (MQ=255)
     ttttttttATAAAAAAAAATAAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAA‑AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑ttttt                                                                                                                               >  1:1827979/1‑128 (MQ=255)
          tttAT‑AAAAAAAATTAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAA‑AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑A‑‑‑TT‑G‑‑‑ttttttttttt                                                                                                                         >  1:3877953/1‑128 (MQ=255)
             ataAAAAAAAATAAAAATTTTTCAT‑TTAATGCCATTTGTAAAAA‑AGCCTATGTTCTAGGCTTTTAATTATACTTAACAACATTACCACGCTTACAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TG‑G‑‑‑ttttttttttt‑tt                                                                                                                      >  1:4135788/1‑128 (MQ=255)
              taAAAAAAAATAATATTTTTTATT‑TTAATTCCATATTTAAAAA‑ATACAATTTTCTAGGTTTTTTTTTATTTTTTTTAAAATTAAAACGGTTTTAAATTTTT‑TTTTTT‑‑T‑GG‑‑C‑‑‑TT‑G‑‑‑ttttttttttt‑ttt                                                                                                                     <  2:2247802/128‑1 (MQ=255)
              taAAAAAAAATAAAAATTTTTCAT‑TTAAAGCGCATTGTAAAAA‑ACCCTTTGTTGTCGGCTTTTTATTATACTTAACAACATTACAACGGTTTCAAAGTGTT‑TTTTTT‑‑T‑GG‑‑C‑‑‑TT‑G‑‑‑ttttttttttt‑ttt                                                                                                                     <  2:5275429/128‑1 (MQ=255)
              taAAAAAAAATAAAAATTTTTAAT‑TTAAACCCCTATTTAAAAA‑ATCCTATGTTCTAGGCTTTTTATTATAATTATCAACATTACAACGCTTTCAAATTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑ttttttttttt‑ttt                                                                                                                     <  1:5279683/128‑1 (MQ=255)
              taAAAAAAAAAAATAATTTTTAAT‑TTAAATCCATTTGTAAAAA‑AGACTATGTTCTAGGCTTTTTATTATACTTATCAACATTAAAACTCTTTAAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑ttttttttttt‑ttt                                                                                                                     <  1:4931186/128‑1 (MQ=255)
                   aaaaataaaaatTTTTTATATTAATCAAATTTTTAAAAAGAGATTTTGTTTT‑‑GTTTTTTTTTATTATTTTCAAAATTACAACGGGTTCAAATTTTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑ttttttttttt‑tttttttg                                                                                                                <  2:2617435/128‑4 (MQ=255)
                     aaataaaaatTTTTCAT‑TTAAAGCCATTTGTAAAAA‑AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GT‑‑C‑‑‑TT‑G‑‑‑ttttttttttt‑ttttttttta                                                                                                              >  1:4027125/1‑123 (MQ=255)
                     aaataaaaatTTTTCAT‑TTAAAGCCATTTGTAAAAA‑AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑TTTTTTTTTTT‑TTTTTTTaaa                                                                                                              >  1:2507079/1‑128 (MQ=255)
                        taaaaatTTTTTAA‑TTAAAGGCAATTGTAAAAA‑AGCCTATGTGCTAGGCTTTTTATTAAACTTATAAACATTTAAACGCCTTCCAACTGTT‑TTTTTT‑‑A‑GG‑‑C‑‑‑TTGG‑‑‑TTTTTTTTTTT‑TTTTTGTaaaaa                                                                                                            <  2:2942292/128‑1 (MQ=255)
                        taaaaatTTTACAA‑ATAAACCCAATTGTAAAAA‑ACCAAATGTTCTAGGCTTTTTATTAAACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTaaaaa                                                                                                            <  1:4208716/128‑1 (MQ=255)
                          aaaatTTTTAAT‑TTTAATACATTTGTAAAAA‑ATTCTATTTTTTAGTGTTTTTATTTTAATTATAAACAATACAACGCTTTAAAAGTGTT‑TTTTTT‑‑T‑TG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATa                                                                                                          <  2:559969/128‑1 (MQ=255)
                          aaaatTTTTAAA‑TATAATACATTTTTAAAAA‑ACCATATTTTTTATGCTTTTTTTTATACTTTTAAAAATTAAAACTCTTTAAAAGTTTT‑TTTTTT‑‑T‑GGGTT‑‑‑TT‑T‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAAt                                                                                                           <  1:5124638/128‑1 (MQ=255)
                          aaaatTTTT‑AT‑TTATAGCCATTTTATAAAA‑CTACTAATTTTTTGGGTTTTTTTTATATTTATCAACATTACAACGCTTTTAAAGTGTA‑TTTTTTTGG‑GG‑‑T‑‑‑TT‑T‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATa                                                                                                          <  2:481283/128‑1 (MQ=255)
                           aaatTTTTTTT‑TTAAATTAATTTTTAAAAA‑ATTATATTTTTTATTTTTTTTTTTATAATTATAAAAATTAAAATTTTTTTAAATTTTT‑TTTTTT‑‑ATGG‑‑T‑‑‑TT‑T‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATaa                                                                                                         <  1:1587515/128‑1 (MQ=255)
                           aaatTTTTCAT‑TTAAAGCCATTTGTAAAAA‑AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTAAAAATaa                                                                                                         >  2:4640819/1‑128 (MQ=255)
                            aatTTTTCAT‑TTAAAGCCATTTGTAAAAA‑AGCCTATGTTCTAGGCTTTTTATTTTACTTTTCACAATTACACCGCGTTCAATGTGTA‑TTTTTT‑‑T‑TG‑‑C‑‑‑TT‑G‑‑‑TTTTTTTTTTT‑TTTTGTTaaattacaag                                                                                                       >  2:3514277/1‑121 (MQ=255)
                             atTTTTCAT‑TTAAAGCCATTTGTAAAAA‑AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑TTTTTTTTTTT‑TTTTTTTTTAAATataat                                                                                                      >  2:1529253/1‑127 (MQ=255)
                              attttAAA‑TTAAATCAATTTTTAAAAA‑ATATTATTTTTTATTTTTTTTATTTTAATTATAAAATTTAAAAAGCTTTAAAATTTTT‑TTTTTT‑‑T‑GG‑‑CTTTTT‑T‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATaaa                                                                                                        <  1:1442397/127‑1 (MQ=255)
                               ttttCAT‑TTAAAGCCATTTGTAAAAA‑AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑TTTTTTTTTTT‑TTTTTTAAAAAATAAAAGTa                                                                                                    >  1:1109290/1‑128 (MQ=255)
                                attaaT‑TTAAATCCATTTGTAAAAA‑AGCCTATGTTCTAGTCTTTTTATTATAATTATCAACATTACAACGCTTTAAAATTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTa                                                                                                    <  1:658037/124‑1 (MQ=255)
                                 tttaaattAAATCCATTTGTAAAAA‑AGCCTATTTTCTAGGCTTTTTATTTTAATTATCAACATTACAACGCTTTCAAATTTTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTa                                                                                                    <  1:1364503/122‑1 (MQ=255)
                                 taaaT‑TTAAATCAATTTTTAAAAA‑ATCTTATTTTATTGGTTTTTTATTTTAATTATAAAAATTAAAACGCTTTAAAATTTTA‑TTTTTT‑‑A‑TGTTT‑‑‑TT‑T‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTa                                                                                                    <  1:1204427/125‑1 (MQ=255)
                                     t‑ttAAATACATTTTTAAAAA‑ATCATATTTTTTATTTTTTTTATTATAATTATAAAAATTAAAAAGCTTTCAAATTTTA‑TTTTTT‑‑T‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGAtt                                                                                               <  1:5186771/128‑1 (MQ=255)
                                          aaGCCATTTGTAAAAA‑AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTAAAAATAAAATTAAGATTTgta                                                                                           >  1:2689560/1‑126 (MQ=255)
                                               aTTTGTAAAAA‑AGCCCATGTTCTAGGCTTTTTATTATACATATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTAATAATAAATTTAAGATTTTGAT‑Cacc                                                                                     >  1:5213463/1‑126 (MQ=255)
                                                 ttGTAAAAA‑AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGATAGAttttgttgatcca                                                                                    >  1:5521292/1‑118 (MQ=255)
                                                   ttAAAAA‑AGCCTATTTTATAGGCTTTTTATTATACTTATAAAAATTAATAAGCTTTAAAATTTTA‑TTTTTT‑‑A‑TG‑‑C‑‑‑TT‑G‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCaaaa                                                                                <  1:580327/127‑1 (MQ=255)
                                                   gTAAAAA‑ATTCTATGTTTTTTGGTTTTTATTATAATTATTAAAATTAAAAAGGTTTTAAATTGTT‑TTTTTT‑‑T‑GGT‑T‑‑‑TT‑T‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCaaa                                                                                 <  2:3630404/128‑1 (MQ=255)
                                                    tAAAAA‑ATCATATTTTTTTTGATTTTTATTATAATTATAAAAATTAAAACTCTTTCAAATTGTA‑TTTTTT‑‑T‑TG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCaaaa                                                                                <  2:4324126/128‑1 (MQ=255)
                                                    tAAAAA‑AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GTT‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAATTAATATTTGGAT‑AAACCcaa                                                                                 >  2:4457285/1‑128 (MQ=255)
                                                    tAAAAA‑AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAATTAATATTTTGAT‑AAACCaaaa                                                                                >  2:4228866/1‑128 (MQ=255)
                                                     aaaaa‑aGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑TTTTTTTTTTT‑TTTTT‑TAAAAATAAAATTAATATTTGGAT‑AAAACAAAACtt                                                                             >  2:1977712/1‑127 (MQ=255)
                                                       aaa‑aCCCTATGTTTAAGGTTTTTTATTATAATTATAAAAATTAAAAAGTTTTAAAATTTTT‑TTTTTT‑‑T‑GG‑‑T‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACta                                                                             <  2:5438001/128‑1 (MQ=255)
                                                            tccTATGTTATATGCTTTTTATTTTAAATATCAACATTACAACGCTTTTAAATGGTT‑TTTTTT‑‑T‑GG‑‑G‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTATAT‑c                                                                        <  2:1287945/127‑1 (MQ=255)
                                                            gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GTT‑TTTTTTTTTTT‑TTTTTTTAAAATTAAAAGTAAGATTTGGAT‑AGGCCAAAAatatat                                                                          >  2:3917192/1‑128 (MQ=255)
                                                            gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTAAAAATTAAATTAATATTTTGAT‑AAACAaaaaaatttat                                                                         >  1:3022636/1‑121 (MQ=255)
                                                            gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑TTTTTTTATTT‑TTTTTGTAAAAATAAAATTAATATTTGGTA‑AAACCaaaaagtaatct                                                                        >  2:1161889/1‑120 (MQ=255)
                                                            gCCTATGTTCTAGGCCTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GTTTTTTTTTTTTTT‑TTTTTGTAAATATAATATTTAGATTTGGAA‑GCACCaaaaattat                                                                           >  1:2894486/1‑123 (MQ=255)
                                                             ctttttttttatgCTTTTTTTTTTTATTTTCAAAATTACATCTCTTTAAAAGTGTT‑TTTTTT‑‑ATGT‑‑T‑‑‑TT‑T‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTATAT‑Ca                                                                       <  2:4712939/116‑1 (MQ=255)
                                                               ttttttatttttttttttttATATTTTTAAAAATTAAAACTTTTTAAAATTGTA‑TTTTTT‑‑A‑TT‑‑CT‑‑TT‑T‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTATAT‑Caaa                                                                     <  1:971045/116‑1 (MQ=255)
                                                               tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑TTTTTTTTTTT‑TTTTTTTAAAAAATAAAGTAATATTTGGAT‑AAAACAAAAGTTTAT‑Aaaaa                                                                    >  1:3573370/1‑128 (MQ=255)
                                                                attttttttttttttttttATAATTATTAAAATTAAAACTCTTTCAAATTTTA‑TTTTTT‑‑A‑GG‑‑CTT‑TT‑T‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTATAT‑Caaa                                                                     <  1:4572930/117‑1 (MQ=255)
                                                                 tttttttttcTTTTTATTATAAATATTAAAATTAAAACTCTTTAAAATTTTT‑TTTTTT‑‑A‑TG‑‑CTT‑TT‑T‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTATAT‑Caaaa                                                                    <  1:3772083/119‑1 (MQ=255)
                                                                 tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACAATTT‑aaaaaa                                                                   >  1:4391728/1‑128 (MQ=255)
                                                                 tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑TTTTTTTTTTT‑TTTTTTTAAAAATAAAATTAAATTTTTGAA‑AAAACAAAAATATAT‑Aaaaaaa                                                                  >  1:5332028/1‑128 (MQ=255)
                                                                  gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTAAAAATAAATGTAAAATTTTGTT‑AAACCAAAACtttttaataaaa                                                                   >  1:2336107/1‑117 (MQ=255)
                                                                  gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGTT‑AAACCAAAAATATAT‑Aaaaaaa                                                                  >  1:335049/1‑128 (MQ=255)
                                                                   ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GTTTTTTTTTTTTTT‑TTTTTTTTTAAATAAAAGTAATATTTGGAA‑CAACAAAAAATATAA‑Caaaaa                                                                   >  1:5406323/1‑128 (MQ=255)
                                                                   acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑‑TTTTTTTTTT‑TTTTTGAAAAAAAAAAAGAAAATTTTGTAA‑AAACCAAAAATATAT‑AAAAAAAAta                                                               >  2:4139871/4‑127 (MQ=255)
                                                                    catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTAAAAATAAAAGTAATATTTGGAT‑CACCCAAAAAAATAT‑CAAAAAAAt                                                                >  1:4645933/3‑128 (MQ=255)
                                                                     cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GATTTTTTTTTTTTT‑TTTTTGTTAAAATAAAATTAAAATTTGTAT‑CAAAAAAAAAAAAAT‑aaaaaata                                                                 >  2:4996515/1‑126 (MQ=255)
                                                                     cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑TTTTTTTTTTT‑TTTTTTTAAAAATAAAAGTAATATTTTGAT‑AAACAAAAACAATTA‑AAAAAAAATTa                                                              >  2:1662670/1‑128 (MQ=255)
                                                                       tatatttttATTATAATTATAAAAATTAAAAAGCTTTAAAATTGTATTTTTTT‑‑T‑GT‑‑T‑‑‑TT‑T‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTATAT‑CAAAAAAATTaa                                                             <  2:4503317/124‑1 (MQ=255)
                                                                        ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTAAAAATAAAATTAAAAATTGGAA‑AAACaaaaaaattaa‑aaaaaaaattaaa                                                            >  1:754177/1‑128 (MQ=255)
                                                                         ggtttttATTAAACTTATCAAATTTACAACGCTTTAAAATTGTT‑TTTTTT‑‑T‑GG‑‑CTT‑TT‑T‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTATAT‑CAAAAAAATTaaa                                                            <  1:4468144/126‑1 (MQ=255)
                                                                            ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTTAAAATAAAAGAAAAAATTTGAT‑AAAACAAAAATAAAT‑AAAAAAAATTaaaaaaa                                                        >  1:857162/1‑128 (MQ=255)
                                                                             tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GTTTTTTTTTTTTTT‑TTTTTTTAAAAATAAAATTAAAATTTTGAT‑AAACAAAAAATATTT‑AAAAAAAATTaaaaaa                                                         >  2:4390182/1‑128 (MQ=255)
                                                                             tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTTAAAATAAATTTAA‑ATTTTTATAAAACAAAAAAAAAAA‑AAAAAAAATTaaaaaaaa                                                       >  2:3790829/1‑128 (MQ=255)
                                                                             tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTAAAAATAAATGTAAGATTTGGAT‑AAACCAAAACTTTtt‑aaaaaaaattaaaaaaaa                                                       >  2:344379/1‑128 (MQ=255)
                                                                                attataattataAACATTTCATAGTTTTCAAAGTTTT‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTATAT‑CAAAAAAATTAAAAAAAAtag                                                    <  2:5346368/128‑1 (MQ=255)
                                                                                 ttatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GTT‑TTTTTTTTTTT‑TTTTTTTAAAAATAAAATTAATATTTTGAA‑AAACAAAAAATAAAA‑Aaaaaaaaataaaaaaaatta                                                    >  2:2112556/1‑126 (MQ=255)
                                                                                 ttatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑TTTTTTTTTTTATTTTTTTAAAAAAAAAAATAA‑ATATGTAT‑CAAAAAATCATAAAT‑AACAAAAATTaaaaaaaaataat                                                  >  2:5089632/1‑123 (MQ=255)
                                                                                    taCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GTT‑TTTTTTTTTTT‑TTTTTTTAAAAATAAAATTAATATTTTTAT‑AAAACAAAAATATTT‑AAAAAAAATTAAAAAAAAtatttt                                                 >  1:1685719/1‑128 (MQ=255)
                                                                                     aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTAAAAATAAAATTAAATTTTTGAA‑AAACCAAAAAAAATA‑AAAAAAAAATAAAAAAAAaattttat                                               >  2:1787714/1‑127 (MQ=255)
                                                                                     aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTAAAAAAAAAATTAAAATTTGTAA‑CAACCAAAAATA‑at‑aaaaaaaaataaaaaaaaaaattaaat                                              >  1:819898/1‑119 (MQ=255)
                                                                                      cTTATTAAAATATCAACGCATTCAATGTTTA‑TTTTTT‑‑T‑TG‑‑C‑‑‑TT‑T‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTATAT‑CAAAAAAATTAAAAAAAAtagtttagtt                                             <  2:1339392/128‑1 (MQ=255)
                                                                                         aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GTTTTTTTTTTTTTT‑TTTTTTTAAAAAAAAAAATAAAATTTTTTT‑AAAAACAAAAAATAT‑AAAAAAAATTTAAAAAAAaaatttaatt                                             >  1:1301353/1‑128 (MQ=255)
                                                                                         aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAATATTTGGAT‑AAACCAAAACGAAAA‑AAAAAAAAATAAAAAAAAaattttagttta                                           >  2:3170483/1‑126 (MQ=255)
                                                                                           cAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTAAAAATAAAAGTAAGATTTTGAT‑CAACAAAAAAAATAT‑AAAAAAAAATAAAAAAAAtattttattttttt                                         >  1:3212582/1‑124 (MQ=255)
                                                                                               aTTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GTT‑TTTTTTTTTTT‑TTTTTTTAAAAATAAAAGTAATATTTGTAT‑AAAACAAAAAAATAA‑AAAAAAAATAAAAAAAAATATTTTATTTAAtttta                                      >  2:813066/1‑127 (MQ=255)
                                                                                                ttACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTAAAAAAAAAATTAAGATTTTGAT‑CAACCAAAACTATAT‑AAAAAAAAATAAAAAAAATAGTTTATTTGTATTTCaa                                    >  1:1006379/1‑128 (MQ=255)
                                                                                                   cAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GTT‑TTTTTTTTTTT‑TTTTTTTAAAAATAAAATTAAGTTTTTGAT‑AAACCAAAACTATTA‑AAAAAAAATAAAAAAAAATATATTATTTTATTTTaaaaa                                  >  1:3439050/1‑127 (MQ=255)
                                                                                                     aatattttaatttgtA‑TTTTTT‑‑T‑CT‑‑C‑‑‑TT‑GTT‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTATAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCt                                <  2:4548352/116‑1 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTAAAAAAAAAATTAAAATTTGGAA‑AAACCAAAAATATAA‑AAAAAAAATTAAAAAAAAAAATTTATTTAAATTTaaaaaata                               >  1:425522/1‑124 (MQ=255)
                                                                                                     aCGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAATTTAAATTTGTAA‑AAACCAAAACTATAT‑AAAAAAAATTAAAAAAAAAATTTAAGTTGAGttaaaaaacta                               >  1:4858682/1‑119 (MQ=255)
                                                                                                     aCGATTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GTT‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAATTAATATTTGTAT‑CAACCAAAACAATTT‑CAAAAAAATTAAAAAAACTAATTGTGTGATGTTTCAAAtga                                >  2:2435563/1‑126 (MQ=255)
                                                                                                          ttCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GTTTTTTTTTTTTTT‑TTTTTTTAAAAAAAAAAGTAATATTTGTTA‑AACCCAAAACTAAATAAAAAAAAATTAAAAAAAATA‑TTTATTTTATTTTGAAATATGCat                            >  1:2794523/1‑128 (MQ=255)
                                                                                                          ttCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GTTTTTTTTTTTTTT‑TTTTTGTAAAAATAAAATTAATATTTTGAT‑AAACAAAAACTATAA‑AAAAAAATTTAAAAAAAATATTTTATTTTTGTTAAAAATATGCat                            >  2:2685648/1‑128 (MQ=255)
                                                                                                          ttCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTTAAAAAAAAATTAAATATTGGAT‑CAACCAAAAATAAAT‑AAAAAAAATAAAAAAAAAATTTTTTTTTGAGTTTaaattatgaaata                          >  2:487186/1‑118 (MQ=255)
                                                                                                          ttCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAATAAAATTTGTAT‑AAAAAAAAAAAATAA‑AAAAAAAATTATAAAAAATTTATAATTTTAATTTCAAATCTgaaaaa                          >  1:2601944/1‑123 (MQ=255)
                                                                                                           tCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GTT‑TTTTTTTTTTT‑TTTTTTTAAAAAATAAAATAAAATTTTGATACACCAAAAAATATAA‑AAAAAAAATAATAAAAAATAGTTTAGTT‑AGTTTaaaaaaagatatt                          >  2:284000/1‑119 (MQ=255)
                                                                                                           tCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGTAT‑AAACCAAAAATATAT‑AAAAAAAATTAAAAAAAATAATTTTGTTAAGTTTCAAAtattaatatt                         >  1:4114516/1‑119 (MQ=255)
                                                                                                           tCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑‑TTTTTTTTTT‑TTTTTGTAAAAATAAAATTAAGATTTGGAT‑AAACCAAAAAAATAT‑AAAAAAAATTAAAAAAAAAATTTTATTTTATTTTAAAATATGCAtatata                       >  2:1876752/1‑128 (MQ=255)
                                                                                                            cataGTTTA‑TTTTTT‑‑T‑TG‑‑G‑‑‑TT‑G‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTATAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCAtatata                       <  1:5016156/125‑1 (MQ=255)
                                                                                                            cAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTAAAAATAAAATTAATATTTTGAT‑CAACAAAAAATATAT‑TAAAAAAATTAAAAAAAATATTTTATTTTAGTTTAAAAAATGAatatat                        >  1:3978639/1‑128 (MQ=255)
                                                                                                            cAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGAAAAAATAAAATTAAAATTTGGAT‑AAACCAAAACTAAAA‑AAAAAAAAATAAAAAAAATTGTTTATTTTTGTTTCAAATATTTatatat                        >  1:3643013/1‑128 (MQ=255)
                                                                                                             aaaGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTAAAAAAAAAAGTAAGATTTGGAG‑CAACCAAAAATATAT‑AAAAAAAATTAAAAAAAAAATTTTTGTTATGTTTAAAAAATGCaaaaaaa                       >  1:2102571/1‑122 (MQ=255)
                                                                                                             aaaGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAATTAATATTTGGAA‑AAACCAAAACTATAT‑CAAAAAATAAAAAAAAAAAAATTTTTTTTAGTATAAAATCTTAAtagata                       >  1:3110140/1‑128 (MQ=255)
                                                                                                                           t‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑AAACCAAAACTATAT‑CAAAAAAAATAAAAAAAATAATTTATTTTAGTTTAAAAAATACAAATATAATACAAAGTAAtta         >  2:1431463/1‑127 (MQ=255)
                                                                                                                              a‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTTTAAAAAAAAAATTAAAAATTGGAA‑AAACCAAAACTATATAAAAAAAAATAAAAAAAAATATTTTA‑TTTATTTTAAAATCTACAGATTATGTACAATGGAAatt         >  1:4515504/1‑128 (MQ=255)
                                                                                                                              a‑GG‑‑C‑‑‑TT‑GT‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTATAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAGttt         <  1:4779911/128‑1 (MQ=255)
                                                                                                                              a‑GG‑‑C‑‑‑TT‑G‑‑‑TTTTTTTTTTT‑TTTTTTTAAAAATAAAAGTAAGATTTGGAT‑AAACCAAAAATAAAT‑AAAAAAAATTAAAAAAAATAGTTTATTTGAATTTAAAATATGAATTAATAGTAAAAAGGAATTTa        >  2:522270/1‑128 (MQ=255)
                                                                                                                               tgg‑‑C‑‑‑TT‑G‑‑‑‑TTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTATAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt       <  2:637699/127‑1 (MQ=255)
                                                                                                                                    c‑‑‑TT‑G‑‑‑TTTTTTTTTTT‑TTTTTTTAAAAATAAAAGTAATATTTGGTT‑AAACCAAAAATAAAT‑AAAAAAAATTAAAAAAAAATTTTTATTTTATTTTCAAATATGAATATATATTAaaaataatattatga     >  2:4938329/1‑117 (MQ=255)
                                                                                                                                            |                                                                                                                                    
TTTAATTTTTTTTATAAAAAAAAATAAAAATTTTTCAT‑TTAAAGCCATTTGTAAAAA‑AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTT‑‑A‑GG‑‑C‑‑‑TT‑G‑‑‑TTTTTTTTTTT‑TTTTTGTAAAAATAAAAGTAAGATTTGGAT‑CAACCAAAACTATAT‑CAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAG  >  CP016816/203768‑204022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑