Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9370CA36.3% 1733.5 / 174.2 1179intergenic (+321/+137)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (327/395);  new base A (316/95);  total (654/525)
Fisher's exact test for biased strand distribution p-value = 1.15e-25
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1191 total aligned reads displayed.

AAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203809‑204064
                                                                                                                                          |                                                                                                                               
         gTAAAAAAGATTATTTTATAGGCTTTTTATTATACTTATAAAAATTACAACTCTTTCAAATTGTA‑TTTTTTA‑GG‑‑A‑TTGT‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAAGATTTGGATCAACCaaa                                                                                                                          <  1:4122852/128‑1 (MQ=255)
          tAAAAAAGTCTATGTTTTTTGGTTTTTATTATACTTATTAAAATTTCAACGCTTTAAAATTGTT‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAAGATTTGGATCAACCaaaa                                                                                                                         <  2:4560275/128‑1 (MQ=255)
          tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTTTTTTTT‑‑TTTTTTAAAAATAAAATTAATATTTGTGTAAACCaaa                                                                                                                          >  2:1726783/1‑128 (MQ=255)
          tAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAATTAATATTTGGATAAACCcaa                                                                                                                          >  2:4457285/1‑128 (MQ=255)
          tAAAAAAGCCTATGTTCTAGGCTTTTTAATATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTTTTTTTTTATTTTTTAAAAATAAAATTAATATTTTTATCaaaaaaa                                                                                                                          >  2:4979356/1‑123 (MQ=255)
                aGCCTATGTTCTTGGTTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑‑‑‑‑G‑‑‑TTGTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                                                               <  2:4126254/128‑1 (MQ=255)
                 gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTTTTTTTT‑‑TTTTTTAAAAATTAAATTAATATTTTGATAAACAaaaaaatttat                                                                                                                  >  1:3022636/1‑121 (MQ=255)
                 gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAATTAATATTTGTATAAACAAAAAatatataa                                                                                                                 >  1:2551488/1‑126 (MQ=255)
                 gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAAGTTTTGGATCAACCAAAACTatataa                                                                                                                 >  2:564557/1‑126 (MQ=255)
                 gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTTTTTTTT‑‑TTTT‑TAAAAAAAAAATTAAGATTTGGATCAACCAAAAATATATaaa                                                                                                                >  2:5387450/1‑128 (MQ=255)
                   cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAATTAAGTTTTGGATCAACCAAAACTATATCaa                                                                                                                >  1:5482290/1‑128 (MQ=255)
                       aacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTTTTTTTT‑‑TTTTTTATAAATAAAATTAATTTTTGTAAAAACCAAAAATA‑ATaaaaaaaa                                                                                                           >  1:1358246/5‑128 (MQ=255)
                         catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTTTTTTTT‑‑TTTTTTAAAAATAAAATTAAATTTTTGAAAAACCAAAAATATATaaaaaaaa                                                                                                           >  2:2620190/3‑128 (MQ=255)
                          cTAGGCTTTTTATTATACTTATCATCATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTTTTTTTTTTTTTTT‑‑TTTTTTAAAAATAAAATTAAAATTTAGAAATACGAAAACTAAATaaaaaaaa                                                                                                           >  2:1614064/1‑128 (MQ=255)
                          cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTTTTTTTT‑‑TTTTTTAAAAATAAAAGTAAAATTTGTTAAAACCAAAAATATTACAAAAAAAtt                                                                                                         >  2:2453308/1‑128 (MQ=255)
                          cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTTTTTTTT‑‑TTTTTTAAAAAAAAAAGATATATTTGTTGCAACCAAAACAATATAAAAAAAAtt                                                                                                         >  1:3503860/1‑128 (MQ=255)
                          cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑‑‑‑‑TTTTTTTT‑‑TTTTGTAAAAATAAAAGTAATATTTTGATCAAACAAAACTATAT‑AAAAAAATTaaaaaa                                                                                                   >  1:1843466/1‑128 (MQ=255)
                           ttttatttttATTATACTTATAAAAATTAAAAAGATTTAAAATTGTA‑TTTTTTA‑GGTTT‑TTT‑‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAAtt                                                                                                         <  1:5337632/123‑1 (MQ=255)
                            tatatttttATTATAATTATAAAAATTAAAAAGCTTTAAAATTGTATTTTTTTT‑GT‑‑T‑TTT‑‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaa                                                                                                       <  2:4503317/124‑1 (MQ=255)
                            aGGCTTTTTTTTTTAATTTTCAAAATTAAAACGCTTTAAAAGTTTT‑TTTTTTT‑GG‑‑C‑TTT‑‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaa                                                                                                      <  1:676985/128‑1 (MQ=255)
                            aGGCTTTTTATTATACTTAACAAAATTTCAACGCTTTAAAATTGTA‑TTTTTTA‑GG‑‑CTTTT‑‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaa                                                                                                       <  1:5279290/128‑1 (MQ=255)
                             ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTTTTTTTT‑‑TTTTTTAAAAATAAAATTAACATTTTGAACACACCAAACAATATAAAAAAAATTaa                                                                                                       >  1:5415783/1‑128 (MQ=255)
                                  tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTTTTTTTTTTTTTTT‑‑TTTTTTAAAAATAAAATTAAAATTTTGATAAACAAAAAATATTTAAAAAAAATTaaaaaa                                                                                                   >  2:4390182/1‑128 (MQ=255)
                                    tattatAATTATAAAAATTAAAAAGATTTCAAAGTGTT‑TTTTTTT‑TG‑‑C‑TT‑‑‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagt                                                                                             <  2:5460101/128‑1 (MQ=255)
                                       tataCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTTTTTTTTTTTTTTT‑‑TTTTTTAAAAATAAAATTATTATTTTGTTCAACCAAAAATTTAtaaaaaaaattaaaaaaaattt                                                                                              >  2:1866867/1‑126 (MQ=255)
                                        ataCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAATTTAATATTTGGTTCAACAAAAAATTTATAAAATAATTTAAAAAAATtattt                                                                                            >  1:2363991/1‑128 (MQ=255)
                                         taCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTTTTTTTT‑‑TTTTTTAAAAAAAAAATTAAAATTTGGAAAAAAAAAAAATATAT‑AAAAAAAATAAAAAAAAtattttat                                                                                         >  1:2050782/1‑127 (MQ=255)
                                          aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAATTAATATTTTGAACAACCAAAAATATAAAAAAAAAATTAAAAAAAAtatttta                                                                                          >  1:575484/1‑128 (MQ=255)
                                          aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTTTTTTTT‑‑TTTTTTTAAAATAAAATTAATATTTTGTAAAAACAAAAATATTAAAAAAAAATTAAAAAAAAtatttttt                                                                                         >  2:842712/1‑126 (MQ=255)
                                          aCTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTTTTTTTT‑‑TTTTTTAAAAATAAAATTAAATTTTTGAAAAACCAAAAAAAATAAAAAAAAAATAAAAAAAAaattttat                                                                                         >  2:1787714/1‑127 (MQ=255)
                                           cTTATTAAAATATCAACGCATTCAATGTTTA‑TTTTTTT‑TG‑‑C‑TTT‑‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttagtt                                                                                       <  2:1339392/128‑1 (MQ=255)
                                             tATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTTTTTTTT‑‑TTTTTTAAAATTAAAATTAATATTTTTTACAAACAAAAAAATATCAATAAAATTAAAAAAAAttttttatttat                                                                                     >  2:3868211/1‑126 (MQ=255)
                                              ttCAACATTTCAACGTTTTTAATTTTTT‑TTTTTTA‑TG‑‑CTTTT‑‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGa                                                                                     <  2:5310257/127‑1 (MQ=255)
                                              aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTTTTTTTT‑‑TTTTTTAAAAAAAAAATTAATATTTTTATAAACCAAAACATTATAAAAAAAATTAAAAAAAAaattttatttta                                                                                     >  2:2939880/1‑126 (MQ=255)
                                              aTCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAATATTTGGATAAACCAAAACGAAAAAAAAAAAAATAAAAAAAAaattttagttta                                                                                     >  2:3170483/1‑126 (MQ=255)
                                                cAACATTACAACGCTTTCAAAGTGAA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAAAAAAACAAAGATTTTTATAAACAAAAACTATAACAAAAAAATTAAAAAAAAtatattttttaaat                                                                                   >  1:449628/1‑116 (MQ=255)
                                                   cATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAATTAATATTTGTATAAACAAAAAATTTATAAAAAAAATTAAAAAAAAAattttattttatttt                                                                                 >  1:1930124/1‑128 (MQ=255)
                                                     ttACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAATATTTGTTTCAACAAAAAATTTATAAAAAAATTTAAAAAAAAAAGTTTTTTTGATTTTaaa                                                                              >  1:5173839/1‑128 (MQ=255)
                                                          aCGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑‑TTTTTTTTTTT‑‑TTTTGTAAAAAAAAAAGTAATATTTGGAACAACCAAAACTATATCAAAAAAATTAAAAAAAATATTTTATTTGATTTTCAAATATgaa                                                                       >  1:766532/1‑126 (MQ=255)
                                                               ttCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAATTAATATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATATTTTATTTTAGTTTCAAAtattaata                                                                     >  1:223501/1‑121 (MQ=255)
                                                               atttatttttA‑TTTTTTATGT‑‑T‑TTT‑‑‑TTTTTTTTTTTT‑‑TTTTGTTAAAATAATAGTAAGATTTGGATCAACCAAAACTATATCAAAAAATTTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatat                                                                    <  2:3539679/119‑1 (MQ=255)
                                                                tCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTTTTTTTT‑‑TTTTTTAAAAATAAAAGTAAGATTTGGATAAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTAGTTTATTTTAAAATATACatattt                                                                  >  2:4848106/1‑126 (MQ=255)
                                                                   taatttttttttttA‑GG‑‑A‑TTGTT‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatatat                                                                  <  1:5017685/120‑1 (MQ=255)
                                                                   aaGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTTTTTTTT‑‑TTTTTTAAAAATAAAAGTAAGTTTTGTATCAACCAAAAATATAAAAAAAAAATTAAAAAAAATTTTTTATTTGTATTACAAATAAGCataaattct                                                               >  1:441659/1‑125 (MQ=255)
                                                                    aGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTTTTTTTT‑‑TTTT‑TAAAAATAAAAGTAATATTTGGATAAACCAAAAATATATAAAAAAAATTAAAAAAAAAAATTTATTTTAGATTCAAATAAGAATATATATTAc                                                             >  1:1676795/1‑128 (MQ=255)
                                                                     gtgtA‑TTTTTTA‑GG‑‑C‑TTGTT‑TTTTTTTTTTTT‑‑TTTTTTAAAAAAAAAATTTATATTTGGTTCAACCAAAAATTATTAAAAAAAATTTAAAAAAATTTTTTATTTTGATTTCAAATATGGATAATTAGt                                                               >  1:3598213/1‑128 (MQ=255)
                                                                      tgtA‑TTTTTTA‑GG‑‑C‑TTGT‑‑TTTTTTTTTTTT‑‑TTTTGAAAAAAAAAAAGAAATAATTTGATAAAACAAAAAAAAAATAAAAAAATTAAAAAAAATATATTATATTAATTTAAAATATTCATATATAgata                                                             >  1:1557611/1‑125 (MQ=255)
                                                                           ttttttA‑GG‑‑C‑TTGT‑‑TTTTTTTTTTTT‑‑TTTTTTTAAAATAAAATTAAGATTTGGTTAAACCAAAAATATTTAAAAAAAATTAAAAAAAAAATTTTTGTTGATTTTCAAATATGAAATAATTGTACaaat                                                         >  1:3712198/1‑127 (MQ=255)
                                                                             ttttA‑GG‑‑C‑TTGTT‑TTTTTTTTTTTT‑‑TTTTTTAAAAATAAAAGTAAGATTTGGATCAACCAAAAATATATAAAAAAAATTAAAAAAAAATTTTTATTTGATTTTCAAATATTCATATATAGTACaaatt                                                        >  1:3975132/1‑126 (MQ=255)
                                                                                tA‑GG‑‑C‑TTGTT‑TTTTTTTTTTTT‑‑TTTTTTAAAAATAAAAGTAAGATTTTGATAACCCAAAAATATATAAAAAAAATTAAAAAAAAAATTTTTGTTTAGTTTCAAAATTGCATAATTATTACAAAGGAAt                                                     >  2:4319960/1‑128 (MQ=255)
                                                                                tA‑GG‑‑C‑TTG‑‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAATATTTGGATAAACCAAAACTAATAAAAAAAAAATAAAAAAAATATTTTTGTTTATTTTAAAATATGAAAATATATTAAAAAGTAAttt                                                   >  2:339564/1‑128 (MQ=255)
                                                                                       tttttttttttttttttttt‑‑ttttGTTATAATAAAAGTTAGATTTGGATCAATAAAAACTATATCTAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                   <  2:3968189/120‑1 (MQ=255)
                                                                                       tttttttttttttttttttt‑‑ttttGTAAAAATAATAGTAAGATTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                   <  2:1269976/120‑1 (MQ=255)
                                                                                        ttatttttttttttttttt‑‑ttttGTAAAAATAAAAGTAAGATTTTGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                                  <  2:3066701/121‑1 (MQ=255)
                                                                                        ggctttttttttttttttt‑‑ttttGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                                  <  2:4645933/121‑1 (MQ=255)
                                                                                         tttttttttttttttttt‑‑ttttGTAAAAATATAAGTAAGATTTGGATAAACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                 <  1:4060075/122‑1 (MQ=255)
                                                                                            ttttttttttttttt‑‑ttttGTAAATATAAAAGTTAGATTTTGATAAAAAAAATCTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt                                              <  2:1191230/125‑1 (MQ=255)
                                                                                              ttttttttttttt‑‑ttttttAAAAATAAAATTAATTTTTGGAGAAACCAAAACAATTTAAAAAAAATTAAAAAAAATAATTTATTTGAGTTTAAAATATGCAATTATATTAAAAAGTAtttttttttat                                            >  1:1115734/2‑121 (MQ=255)
                                                                                              tgttttttttttt‑‑ttttGTAAAAATAAAAGTAAGATTTGTATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                                            <  2:2873912/126‑1 (MQ=255)
                                                                                                ttttttttttt‑‑ttttGTAAAAATAAAAGTAAGATTTTGATTAAATAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                          <  2:4215433/128‑1 (MQ=255)
                                                                                                ttttttttttt‑‑ttttGTAAAAATAAAAGTAAGATTTGGATAAACCAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                          <  2:1456326/128‑1 (MQ=255)
                                                                                                   tttttttt‑‑ttttGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                                       <  1:4626127/128‑1 (MQ=255)
                                                                                                    ttttttt‑‑ttttGTAAAAATAAAAGTATGATTTGGATCAAACAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaa                                      <  1:4706133/128‑1 (MQ=255)
                                                                                                     tttttt‑‑ttttGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa                                     <  1:1005500/128‑1 (MQ=255)
                                                                                                       tttt‑‑ttttttAAAAAAAAAAGAAAAATTTGGAAAAACCAAAACAATAAAAAAAAAATTAAAAAAAATATTTTAATTTAGTTTCAAATATGCATATATATTAAAAATGAATTTATTATATAAAAAAAtt                                   >  2:4745316/1‑127 (MQ=255)
                                                                                                        ttt‑‑ttttGTAAAAAAAAAATTAAGATTTGGAAAAACCAAAAATATTTAAAAAAAATTAAAAAAAATATTTTTTTTGATTTTAAAATATGAAAATAAATTACAAATTAATTTATGATATAAAAAAAttg                                  >  1:3425225/1‑126 (MQ=255)
                                                                                                         tt‑‑ttttttAAAAATAAAAGTAATATTTGGATCAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTATTTTAGTTTCAAATATGCATATATAATAAAAAGGAATTTTTGATATAAAAAAATGGa                                 >  1:4845875/1‑128 (MQ=255)
                                                                                                             ttttttAAAAAAAAAATTAAGATTTGGAAAAACCAAAAATATATCAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAATATGCATATAAATTAAAAAGGAATTAATTAAATAAAAAAATTGAtt                               >  2:4912211/1‑128 (MQ=255)
                                                                                                              tttgttttaataatAGTAAGATTTGGATAAAAAAAAAATATATTAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                              <  2:2138414/120‑1 (MQ=255)
                                                                                                               ttgtattattAAAAGTATTATTTTGATAAAAAAAAAATATATTAAAATAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                             <  2:2268147/119‑1 (MQ=255)
                                                                                                               ttGTAAAAATAAAATTTAGATTTTGATCATACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                             <  1:2742346/128‑2 (MQ=255)
                                                                                                                   aaaaaTAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGa                         <  2:5071548/128‑1 (MQ=255)
                                                                                                                        ttaaaGTAAGATTTGGATCAAACAAAACTATATCAAAAATATTAAAAAAAATAGTTTAGTTGATTTTAAAATCTTAATATATAGTAAAAATTAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  1:1462860/126‑1 (MQ=255)
                                                                                                                        tAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  1:635312/128‑1 (MQ=255)
                                                                                                                        tAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    >  1:24467/1‑128 (MQ=255)
                                                                                                                         aaaaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                              >  1:4911561/1‑117 (MQ=255)
                                                                                                                          aatgTAATATTTTGATCAATCAAAATTATATCAAAAAAATTAAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                  <  1:4790569/125‑1 (MQ=255)
                                                                                                                          aaaGTTAGATTTGTATCAACATAAAATATATAAATAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                  <  1:1296390/128‑1 (MQ=255)
                                                                                                                           aaGTAAGATTTTTATCAAAGAAAAATATATAAAAAAATTTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                 <  2:5173839/128‑1 (MQ=255)
                                                                                                                           aaGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATACAt                 >  1:5113454/1‑128 (MQ=255)
                                                                                                                             gTAAGATTTGGATCAACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttt               >  1:2919489/1‑128 (MQ=255)
                                                                                                                               aaGATTTGGATAAATATAATTTATATTAAAAATATTAAAAAAAATTTTTTAGTTGAGTTTCTTATCTGAATATATAGTAAAAATTAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             <  1:3855289/128‑1 (MQ=255)
                                                                                                                                aGATTTTGATAAATAAAATCTATATCAAAAAAATTAAATAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            <  2:5234819/128‑1 (MQ=255)
                                                                                                                                aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTTGTTGAGTTTCAAATCTGCATATATAGTACAATGGATTTTATGATAGAAAAAAATGGATTAGTTGATATGACAtttttt            >  1:4547269/1‑128 (MQ=255)
                                                                                                                                aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGTATATATAGTACATAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  1:423967/1‑128 (MQ=255)
                                                                                                                                aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttttt            >  2:1095145/1‑128 (MQ=255)
                                                                                                                                 taTTTTGATAAAACAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa           <  2:1916817/127‑1 (MQ=255)
                                                                                                                                 gATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAATGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa           <  1:5227499/128‑1 (MQ=255)
                                                                                                                                 gATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa           >  1:4338165/1‑128 (MQ=255)
                                                                                                                                 gATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAGTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa           >  2:2027482/1‑128 (MQ=255)
                                                                                                                                  aTTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          >  1:263411/1‑128 (MQ=255)
                                                                                                                                  aTTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          >  1:3134180/1‑128 (MQ=255)
                                                                                                                                  aTTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          >  1:927239/1‑128 (MQ=255)
                                                                                                                                  aTTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          >  1:840928/1‑128 (MQ=255)
                                                                                                                                  aTTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          >  2:674933/1‑128 (MQ=255)
                                                                                                                                   tttGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt         <  1:4178106/128‑1 (MQ=255)
                                                                                                                                     tGGATCAAAAAAAATTATATAAAAAATATTAAAAAAATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt       <  2:3709741/128‑1 (MQ=255)
                                                                                                                                      ggATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtttt      >  2:2690508/1‑128 (MQ=255)
                                                                                                                                      ggATCAACCAAAACTATATC‑AAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                                  <  1:3331633/83‑1 (MQ=255)
                                                                                                                                         tCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAATGAATTTATGATAGAAAAAAATTGATTAGTTGATAATCCATTTTTTAATTTTGtt   >  1:1228188/1‑128 (MQ=255)
                                                                                                                                          |                                                                                                                               
AAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTA‑GG‑‑C‑TTG‑‑‑TTTTTTTTTTTT‑‑TTTTGTAAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203809‑204064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑