Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816311,1490T.62.8% 211.1 / inf 264intergenic (‑72/‑242)JCVSYN2_01300/JCVSYN2_01305hypothetical protein/30S ribosomal protein S21
Reads supporting (aligned to +/- strand):  ref base T (62/35);  new base . (89/75);  total (152/112)
Fisher's exact test for biased strand distribution p-value = 1.54e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.14e-01

Only 100 of 343 total aligned reads displayed.

ACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTA  >  CP016816/311024‑311275
                                                                                                                               |                                                                                                                               
acaaGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCAATTTACACACACCATATTAAAAAATAAAATACTTAATACATAAGATTCAAAACAAATATAAAATACATTCAT‑‑tat                                                                                                                               >  1:3027404/4‑128 (MQ=255)
      tGTAATAAATAATATAAATTTAATTAAAAATTTTTATAACTTTTTCATTTTAGACACCCCTTATTAAAAAATAAAATACTTGTTTTATACGATTCAAAACATATATAACATACATTAAT‑‑tatatatat                                                                                                                         <  2:1949425/128‑1 (MQ=255)
       ttaataaCTAATACAAATTAAATTAAAATTGTAATTATATTTTTAATTTTATACACACCTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAAAATATATAACATACATTCAT‑‑tatatatata                                                                                                                        <  2:4690951/127‑1 (MQ=255)
        taataaCTATATAAAATTAAATTAAAATTGTAATTATGTTTTTCTTTTTACAGACCCCTTTTTAAAAAATAAAATACTTGTTATATAATATTAAAAACATATATAAAATACATTCTT‑‑tatatatatat                                                                                                                       <  2:1695253/128‑1 (MQ=255)
        taataaCTAATCCAAATTAAATTAAAATTTTAATTAAATTTTTAAATTTACACACCCATTATTAAAAAATAAAATACTTTTTACATAATATTCAAAACATATATAACATACATTCAT‑‑attatatatat                                                                                                                       <  1:940836/128‑1 (MQ=255)
         aataaCTAAAACAAATAAACATAAAAATTTAATTAACATTTTCAATTTACACACACCTTATTAAAAAATAAAATAATTGTTAAATAATATACAAAACATATATAACATACAATCAT‑‑tatatatatata                                                                                                                      <  1:3618842/128‑1 (MQ=255)
           taaATAATAAAAATTAAATTAAAATTGTTATTAAATTTTTAATTTTACACACCCCTTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAAAATAAATTCAT‑‑tatatatatatata                                                                                                                    <  2:2415684/128‑1 (MQ=255)
                  tcaaattGAACTTAAAATTGTAATTAACTTTATCATTAAACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatat                                                                                                             <  1:3983441/122‑1 (MQ=255)
                  tcaaaaTGAACTTAAAATTGTAATTAACTTTTTCATTTTAAACACCAATTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatat                                                                                                             <  2:2442763/125‑1 (MQ=255)
                      aaTGAACTTAAAATTTTAATTAACTTTTTAATTTTTAACACCACTTATTAAAAAATAAAATACTTGTTTCATACGATTCAAAACATATATAACATACTTTCAT‑‑tatatatatatatatatatataatg                                                                                                         <  2:4840934/128‑4 (MQ=255)
                         gatcTTAAAATTGTATTTAACTTTTTAATTTAACACACAACTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatgc                                                                                                      <  1:14762/125‑5 (MQ=255)
                         gAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatta                                                                                                      >  1:3842050/1‑124 (MQ=255)
                           acaaaaaaTTGTAATAAAAATTTTCATTTTACACACCCCTAATAAAAAAATAAAATACTTGATAAATACGATTCAAAACAAATATAACATACATACAT‑‑TATATAAAAATATATATATATATaaaaaaa                                                                                                    >  1:2701019/5‑125 (MQ=255)
                           aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataaataaa                                                                                                    >  1:646773/1‑122 (MQ=255)
                           aCTTAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatgcaa                                                                                                    <  1:5541921/128‑7 (MQ=255)
                            tttAAAATTTTATTTAAATTTTTAATTTTACACAAAATTTAATAAAATATAAAATTTTTTTTATATTATATTAAAAAAATATATAAAATAAATTAAT‑‑tatatatatatatatatatataatgaatgta                                                                                                   <  2:909386/127‑10 (MQ=12)
                             ttAAAATTTTAATTAACTTTTTAATTTTACACACACCTTATTAAAAAATAAAATAATTTTTACATAAGATTAAAAAAATATATAAAATATATTATT‑‑tatatatatatatatatatatataatgaatgt                                                                                                  <  2:4343275/128‑9 (MQ=25)
                             ttAAAATTGTAATTAACCTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatatatatcaata                                                                                                  >  1:5455746/1‑122 (MQ=255)
                               aaaaTTGAAATAAACATTTTCATATTACAAACCCCATATTAAAAAAAAAAAAACTTTTTACATACTATTCAAAAAATATATAACAAACAATCAT‑‑tataaatatatatatatatataaaatgaatgtat                                                                                                <  1:731685/128‑13 (MQ=255)
                                aaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatgatatatgt                                                                                               >  1:2315893/1‑117 (MQ=255)
                                aaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataaagaaatatat                                                                                               >  1:1146929/1‑117 (MQ=255)
                                aaaTTGTAATTAAATTTTTAATTTTAAACACAACTTATTAAAAAATAAAATAATTGTTATATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑Gt                                                                                            <  2:2217877/128‑1 (MQ=255)
                                 aaTTTTAATTAACTTTTTAATATTAAACACAAATTATTAAAAAATAAAATAATTTTTACATACTATTAAAAACATATATAAAATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATAT‑g                                                                                             <  1:2475963/128‑1 (MQ=37)
                                 aaTTGTATTTAACTTTTTAATTTTACACACCCCTTTTTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTa                                                                                           <  2:3990573/128‑1 (MQ=255)
                                   ttatatatAACTTTTT‑A‑TTTAAACACACCTTATTAAAAAATATAAAATTTTTTATATAATATTTAAAAAATATATAA‑A‑AAAT‑‑AT‑‑AATAAATATATATATATATATATATAATGCAATAT‑GTAAATGaa                                                                                     <  2:3042607/121‑1 (MQ=255)
                                   ttGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatatatataaatcaatatg                                                                                            >  2:149150/1‑116 (MQ=255)
                                      ttaataaattttaaatttTACACACCCATTAATAAAAAATAAAATATTTGTTAAATTATATTCAAAAAATATATAACATACAATCAT‑‑‑‑‑‑‑‑TATATATATATATATATATAATGCAATAT‑GTAAATGAAAat                                                                                  <  1:3385756/124‑1 (MQ=255)
                                      ataTTAAATTTTTAATTTTAAACACCCATTATTAAAAAAAAAAATAAATGTTACATAAGATTCAAAACATATATAACATA‑‑‑‑CAT‑‑TAAATATATATATATATATATATATAATGCAGTAT‑GTAAATGaaa                                                                                    <  2:4408611/126‑1 (MQ=255)
                                       aaTTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAAAGAAATAT‑ATAAAtt                                                                                       >  2:4120038/1‑127 (MQ=255)
                                       aaTTAACATTTTAATTTTAAACACACATTATTAAAAAATAAAATACTTTTTACATAAGATTAAAAACATATATAAAATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGaa                                                                                     <  2:5406643/128‑1 (MQ=255)
                                       aaTTAAATTTTTAATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGaa                                                                                     <  2:4628086/128‑1 (MQ=255)
                                          tatatttttAATTTTACACATTTCTTATTAAAAAATTAATTTATTTTTAATTACTTTTCAATACATATATTAATTATATTCAT‑‑TATATATATATTTATATTTTTTT‑‑‑‑TGCTATAT‑GTAAATGAAAatat                                                                                <  1:1404238/124‑1 (MQ=255)
                                             cTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATA‑AAT‑AAATAT‑GTAATTTAatatatt                                                                               >  2:2857349/1‑127 (MQ=255)
                                               ttttAATTTTACAAACATCTTATTAAAAAATAAAATATTTGTTAAATACTATACAAAAAATATATAAAATACATTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGt                                                                             <  2:4751422/128‑1 (MQ=255)
                                                     ttttACACACAAATTATTAAAAAATAAAATTCTTTTTATATACGATTCAAAAAATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTataata                                                                       <  2:3842050/128‑1 (MQ=255)
                                                     ttttAAACACCCATTATTTTAAAATAAAATACTTGTTACATAAGATTCAAAAAATATATATCATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTataata                                                                       <  2:5101967/128‑1 (MQ=255)
                                                      tttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTataat                                                                        <  1:4310259/128‑1 (MQ=255)
                                                      tttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAg                                                                      >  1:1655519/1‑128 (MQ=255)
                                                       ttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTAAATAT‑GTAAATGAAAATATGGTataatata                                                                     >  1:5274159/1‑126 (MQ=255)
                                                       ttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATAAAACATACATTCAT‑‑TATATATATATATATATAAATATAAAA‑‑AAATAT‑ATAAAATAAAATATTGTataatatc                                                                     >  2:5334411/1‑126 (MQ=255)
                                                        tACACACCCCTTATTAAAAAATAAAATAATTGTTAAATAATATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAg                                                                      <  2:4887460/128‑1 (MQ=255)
                                                         acacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTCAATAT‑GTAAATGAAAATATGGTATAATAGCaa                                                                   >  1:4375796/1‑128 (MQ=255)
                                                          cacacCCCTTATTAAAAAATAAAATAATTGTTACATACTATTCAAAACATATATAACATACATTCAT‑‑AATAAATATATATATATATATAAATA‑‑‑‑AATAT‑ATAAATTAAAATATTGTATAATATCAACCg                                                                >  2:124013/1‑128 (MQ=255)
                                                               caaatttaaaaaaaTAAAATATATTTTTTATAATATTATAAACATATATAAAATACAT‑‑‑T‑‑TAT‑TATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTtat                                                           <  1:4274902/120‑1 (MQ=255)
                                                                ccTTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATAAATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTta                                                            <  2:2634325/128‑1 (MQ=255)
                                                                 cTTATTAAAAAATAAAATAATTGTTAGATAATATTCAAAACATATATAAAATAAATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTtat                                                           <  2:646773/128‑1 (MQ=255)
                                                                   tattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATA‑AAT‑AAATAT‑CTAAATGAAAATATTTTATAATAAAAAACGTATATaa                                                         >  1:415898/1‑128 (MQ=255)
                                                                   tattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATA‑AA‑GCAATAT‑GTAAATGAAAATATGGTATAATAACACCAGTATATaa                                                         >  2:1023364/1‑128 (MQ=255)
                                                                   tattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATAAAATAT‑GTAAATTAAAATATGTTATAATAGAAACCGTTtatat                                                         >  1:5341974/1‑127 (MQ=255)
                                                                   tattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATAATACATACAATCA‑‑‑‑ATATATTTATTTATATATATATATAATTC‑ATATAGTAAATGAATATATGGTATAATATCAAGCtttttaaa                                                         >  2:1194213/1‑124 (MQ=255)
                                                                     ttaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑TTAAATTAAAATATATTATAATAGCAAACGTTTATAAAg                                                       >  1:2818166/1‑128 (MQ=255)
                                                                      taAAAAATAAAATTATTGTTATATAATATTTAAAAAATATATAAAATATTTTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGt                                                      <  1:3072296/128‑1 (MQ=255)
                                                                         aaaataaaatACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATAT‑TAAAATTAAAATATGGTATAATAGCAACAGTTTATAAATTaaa                                                   >  2:3537493/1‑128 (MQ=255)
                                                                         aaaataaaatACTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATAT‑‑‑‑TTCAATAT‑GTTAATTAAAATAAGATAAAATAGAAAAAGTATATAAAATaaaaa                                                 >  1:4583658/1‑128 (MQ=255)
                                                                          aaataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAT‑AT‑ATATAT‑TTAAATTAAAATATTTTATAATAGCAAACTTATAtaaaataaaa                                                  >  1:2781648/1‑128 (MQ=255)
                                                                           aatataatatTTTTTATATAATTTTTAATAAATATATAAAATATATTTAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGTTATAATAGCAACCGTTTATAAAGTaaaaa                                                 <  2:291325/128‑1 (MQ=255)
                                                                             taaaataCTTGTTACATACGATTGAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATAT‑ATATTTTAAAATATTTTATAATATAAACAGTTTATAAATTaaaaaaa                                               >  2:2008769/1‑128 (MQ=255)
                                                                             taaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAAAA‑‑AAATAT‑TTAAATGAAAATATGATATAATATAAAAATTTTATAAATTaaaaaaa                                               >  2:79072/1‑128 (MQ=255)
                                                                              aaaataCTTGTTACATACGATTAAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATAAAATAA‑TTAAATTAAAATATATTATAATATAAAAAATTTAAAAATTAAAAAAAt                                              >  1:3144636/1‑128 (MQ=255)
                                                                               aaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATA‑AAT‑AAATAT‑GTAAATTAAAATATGGTATAATATCAAAATTTTATAAAGTAAAAAAATa                                             >  2:3202857/1‑128 (MQ=255)
                                                                                 ataCTTGTTACATACGATTCAAAACATATATAACATACATTCA‑‑‑‑ATATATATATATATTTATATATATTATGCAATTT‑GTAATTGAAAATATGGTTTAATATCAAACTATTATAAATTaaaaaatatta                                           >  2:948816/1‑123 (MQ=255)
                                                                                  taCTTGTTACATACGATTCAAAACATATAAAACATACATTCAT‑‑TATATATATA‑‑‑A‑ATATATATATAATACAATAT‑GTAAATGAAAATATTATATAATAGCAAAATTTTATATATTAAAAAAATataaaa                                        >  2:3728737/1‑123 (MQ=255)
                                                                                    atttttAAATACGATTCAAAACATATATAACATAAATACAT‑‑TATATATATATATATATA‑A‑ATATAATGCAATAT‑GTAAATGAAAATATTGTATAATACCAACCGTTTATAAAGTAAAAAAATAGTaaa                                        <  1:493134/124‑1 (MQ=255)
                                                                                     ttGTTATATAATATTTAAAAATTATATTACATA‑ATT‑‑T‑‑TAT‑TATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATTGTATAATAGAAACAGTTTATAAAGTAAAAAAATAGTAAatat                                     <  2:405560/128‑1 (MQ=255)
                                                                                      tGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                      <  1:3295394/128‑1 (MQ=255)
                                                                                       gTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATAT‑GTAAATTAAAATATTATATAATATAAACCTTTTATAAATAAAAAAAATAGTAAatat                                     >  1:4443069/1‑128 (MQ=255)
                                                                                        ttACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATAAATATATATA‑‑‑AAAAT‑CAATAA‑GAAAATGAAAATATGATATAATATAAAACTAATATAAATTAAAAATATATTAAAtataat                                  >  1:1781800/1‑126 (MQ=255)
                                                                                        ttACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTAAATAT‑GTAAATTAAAATATTTTATAATAGAAACATTTTATAAAATAAAaaaatataaaatatt                                    >  1:1009183/1‑127 (MQ=255)
                                                                                          aCATACTATTAAAAACATATATAAAATAAATTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtact                                  <  2:3467266/128‑1 (MQ=255)
                                                                                          aCATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtact                                  <  1:2965787/128‑1 (MQ=255)
                                                                                           cATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGTTATAATAGAAACCGTTTATAAAGTAAAAAAATAGTAAATAtacta                                 >  2:1369285/1‑128 (MQ=255)
                                                                                           cATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtacta                                 <  1:181828/128‑1 (MQ=255)
                                                                                            ataataTTAAAAAAATATATAACATAAATTCAT‑‑TATA‑A‑ATATATATATATATATATAATGAAATAT‑GTAAATGAAAATATGGTATAAAAGCAACAGTTTATAAAGTAAAAAAATAGTAAAAAtactac                                <  1:3568611/123‑1 (MQ=255)
                                                                                            aTACTATTCAAAACATATATAACATACATTCAT‑‑‑‑‑‑‑‑TATATATATATATATATATAATGAAATAT‑GAAAATTAAAATATGGAATAAAATAAACCTTTTATAAAATAAAAAAATATAAATTATACTACTTAt                            >  2:5017655/1‑128 (MQ=255)
                                                                                            aTACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATAT‑GAAAATGAAAATATGGTATAATAGCAACCGTTTATAAATAAAAAAAATAGTAAATAtactac                                >  2:4188225/1‑128 (MQ=255)
                                                                                             taagATTCAAAAAATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATAAAATAT‑TTAAATGAATATATGTTATAATAAAAACAGTTTATAAATTAAAAAAATATTAAATATactact                               >  2:3367943/4‑128 (MQ=255)
                                                                                             aaataTTAAAAACATATATAACATAAATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATactact                               <  2:1810390/124‑1 (MQ=255)
                                                                                              aCGATTAAAAAAATATATAAAATACATTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACtt                              <  2:5262101/128‑1 (MQ=255)
                                                                                               ctaTTCTAAAAATATATAACATAAATTAAT‑‑TATATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATactact                               <  1:4728085/126‑1 (MQ=39)
                                                                                               agATTCAAAAAATATATAAAATAAATTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAataagtagtata                             <  2:2818166/127‑10 (MQ=255)
                                                                                                gATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTAt                            <  1:4958256/128‑1 (MQ=255)
                                                                                                   tCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATA‑ATTA‑‑‑AATAT‑ATAAATAAATATATTTTATAAAAGAAACCAATTATAAATTAAAAAAATATAAAATATAATACATATATACt                       >  2:1626888/1‑128 (MQ=255)
                                                                                                    cAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATA‑ATTA‑‑‑AATAT‑TTAAATTAAAATATGTTATAATATCAACGTTTTATAAAGTAAAAAAATTGAATATAATCTTCTTAttcaatt                      >  1:2911554/1‑123 (MQ=255)
                                                                                                     aaaaCATATATAACATACCTTCAT‑‑TATATATATATATATATATATA‑‑‑AA‑GCAATAT‑TTAAATTAAAATATGTTATAATAGCAACAGTTTAAACAGTAAAAAAATAGTAAATATAAAAATTATTTaaaaa                     >  2:4214226/1‑124 (MQ=255)
                                                                                                        aCATATATAACATACATTCAT‑‑TATATATATATATATATATATAAATA‑‑‑‑AATAT‑ATAAATGAAAATATTATATAATATAAAAATTTTATAAAATAAAAAAAAAGTAAATATAATAATAATTTACtaataa                  >  1:2621166/1‑128 (MQ=255)
                                                                                                        aCATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATTGTATAATATCAACCTTTTATAAAGTAAAAAAATAGTAAATATACTAATTATTTACtaat                    >  2:3912999/1‑128 (MQ=255)
                                                                                                         aatatatAACATACATTAAT‑‑AATATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaa                     <  1:5112795/127‑1 (MQ=255)
                                                                                                          atatatAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATTATAGCAACCGTATATAAAGTAAAAAAATAGTAAATATACTACTTATTtaataataa                  >  2:1111225/1‑128 (MQ=255)
                                                                                                           tatataACATACATTCAT‑‑TATATATATATATATATATATATA‑AAT‑CAATAT‑GTAAATTAAAATATGTTATAATAGAAACATTTTATAAAGTAAAAAAATAGTAAATATACTAAATATTTAATAATaaa                 >  1:2188372/1‑128 (MQ=255)
                                                                                                           tatataACATACATTCAT‑‑TATATATATATA‑‑‑A‑AAAAAAATAATCCAATAT‑CTAAATGAAAATATGGTATAATAGCAACCTATAAAAAAGTAAAAAAATAGAAAATATACTACAAATATACTAATaaaaa               >  2:743989/1‑127 (MQ=255)
                                                                                                           tatataACAAACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGATATAATAAAAAAAATATATAAACTAAAAAAATAGTAAATATAATAATTATTAAATAATAAAAt               >  1:805468/1‑128 (MQ=255)
                                                                                                           tacataACATACATTCAT‑‑TATA‑‑‑A‑ATATATATATAAATATAATCAAATAT‑ATAAAATAAAATATTTTATAATAGCAAACGTATATAAAGTAAAAAAATATTAAATATAGTAATTATTTACTAATAAAAt               >  1:5012225/4‑128 (MQ=255)
                                                                                                            atataACATACATTCATTATATATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACAGTTTATAAATAAAAAAAAAATAAAATATAATACTTATTTACtaat                    >  2:306133/1‑128 (MQ=255)
                                                                                                               taACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATATCAACCTTTTATAAATTAAAAAAATAGTAAATATAATACATATATACTAATAAAATCt             >  1:1931256/1‑128 (MQ=255)
                                                                                                               taACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt             <  1:4678666/128‑1 (MQ=255)
                                                                                                                aaCATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATTGTATAATAGCAACCTTTTATAAAGTAAAAAAATAGTAAATAAACTACTTATTTACTAATAAAATCTa            >  1:1593211/1‑128 (MQ=255)
                                                                                                                  acatattgcat‑‑tATATATATATATATATATATATATAAATAAATAT‑ATATAAAAATATTTTTTATAATATAAACATTTAATAAAAAAAAAATATATAAAATATAAATAATATTAAATAATATAATCTa            >  2:5511549/9‑128 (MQ=2)
                                                                                                                    tacatTCAT‑‑TATATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTAATTATTTAATAATAAAATCTAtt          >  2:3281406/1‑128 (MQ=255)
                                                                                                                    tacatTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGTTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAtttt        >  1:1189031/1‑128 (MQ=255)
                                                                                                                        taaat‑‑tAAATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTttta      <  2:3608388/125‑1 (MQ=255)
                                                                                                                               |                                                                                                                               
ACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATAT‑GTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTA  >  CP016816/311024‑311275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑