Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816311,1500A.61.0% 182.2 / inf 269intergenic (‑73/‑241)JCVSYN2_01300/JCVSYN2_01305hypothetical protein/30S ribosomal protein S21
Reads supporting (aligned to +/- strand):  ref base A (68/37);  new base . (86/78);  total (154/115)
Fisher's exact test for biased strand distribution p-value = 5.80e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.10e-01

Only 100 of 346 total aligned reads displayed.

ACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAA  >  CP016816/311024‑311279
                                                                                                                                |                                                                                                                                 
aCCAGATGTAATAACTTATCCAAATGAACTTAAAAATGTAATTAACAATTTCATATTACACACCCCTTATATAAAAATAAAATACTTCTTACATACTATTCTAAACATAGATAACATACATACAT‑‑tat                                                                                                                                  >  2:1210211/1‑128 (MQ=255)
        taataaCTAATCCAAATTAAATTAAAATTTTAATTAAATTTTTAAATTTACACACCCATTATTAAAAAATAAAATACTTTTTACATAATATTCAAAACATATATAACATACATTCAT‑‑attatatatat                                                                                                                          <  1:940836/128‑1 (MQ=255)
         aataaCTAAAACAAATAAACATAAAAATTTAATTAACATTTTCAATTTACACACACCTTATTAAAAAATAAAATAATTGTTAAATAATATACAAAACATATATAACATACAATCAT‑‑tatatatatata                                                                                                                         <  1:3618842/128‑1 (MQ=255)
          ataaataaTACATATGAAATTAAAATTTTAATTAAATTTTTAATTTTACACACAACTTATTAAAAAATAAAATAATTTTTACATACTATTCAAAAAATATATAACATACATTCAT‑‑tatatatatatat                                                                                                                        <  1:2781502/128‑1 (MQ=255)
           tatcTAATACAAATGAACTTAAAATTGTAATTAACTTTTTAATTTTAAACAACCCTTATAAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCTT‑‑tatatatatatata                                                                                                                       <  2:1244424/125‑1 (MQ=255)
           taaATAATAAAAATTAAATTAAAATTGTTATTAAATTTTTAATTTTACACACCCCTTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAAAATAAATTCAT‑‑tatatatatatata                                                                                                                       <  2:2415684/128‑1 (MQ=255)
            aattAATACATATGAAATTAAAATTGAAAATAAATTTTTCATTTTACACACATCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatat                                                                                                                      <  2:4438077/125‑1 (MQ=255)
                  tcaaattGAACTTAAAATTGTAATTAACTTTATCATTAAACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatat                                                                                                                <  1:3983441/122‑1 (MQ=255)
                  tcaaaaTGAACTTAAAATTGTAATTAACTTTTTCATTTTAAACACCAATTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatat                                                                                                                <  2:2442763/125‑1 (MQ=255)
                  ataaaaTGTACTTAAAATTGTATTTAACTTTTTATATTTATACACACCTTATTAAAAAATAAAATACTTTTTAAATAAGATTCAAAACATATATAACATACATTAAT‑‑tatatatatatatatatatat                                                                                                                <  2:1025918/125‑1 (MQ=255)
                   ccAAATGAACATAAAATAGTAATTAAATTATTCATTTTACACACAACTTAAAAAAACATAAAATACATGTTACATACGATTCAAAACATATATACCATCAAATCAA‑‑tatatataaatatatatataaa                                                                                                               >  2:3559808/1‑126 (MQ=255)
                      aaTGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatatat                                                                                                            <  1:3134446/128‑1 (MQ=255)
                         gatcTTAAAATTGTATTTAACTTTTTAATTTAACACACAACTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatgc                                                                                                         <  1:14762/125‑5 (MQ=255)
                           aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatgcaa                                                                                                       >  1:260818/1‑122 (MQ=255)
                           aCTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATga                                                                                                       >  2:4728085/1‑127 (MQ=255)
                           aCTTAAAATTGTAATTAACTTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatgcaa                                                                                                       <  1:5541921/128‑7 (MQ=255)
                            tttAAAATTTTATTTAAATTTTTAATTTTACACAAAATTTAATAAAATATAAAATTTTTTTTATATTATATTAAAAAAATATATAAAATAAATTAAT‑‑tatatatatatatatatatataatgaatgta                                                                                                      <  2:909386/127‑10 (MQ=12)
                             ttATAATTTTTATTAAATTTTTCTTTATTAACACACCTAATTAAAAAATAAAAAATTTGTTTCATACGATTAAAAACATATATAAAATACAATCAT‑‑tatatatatatatatatatataatgcaatatg                                                                                                     <  2:2750939/128‑11 (MQ=255)
                             ttAAAATTTTAATTAACTTTTTAATTTTACACACACCTTATTAAAAAATAAAATAATTTTTACATAAGATTAAAAAAATATATAAAATATATTATT‑‑tatatatatatatatatatatataatgaatgt                                                                                                     <  2:4343275/128‑9 (MQ=25)
                             ttAAAATTGTAATTAACCTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatatatatcaata                                                                                                     >  1:5455746/1‑122 (MQ=255)
                              tAAAATTGTAATTAAATTTATCATTTTACACACCCCTTATTAAAAAATAAAATAATTGTTACATAATATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatgaatgta                                                                                                    <  2:5015090/128‑10 (MQ=38)
                               aaaaTTGAAATAAACATTTTCATATTACAAACCCCATATTAAAAAAAAAAAAACTTTTTACATACTATTCAAAAAATATATAACAAACAATCAT‑‑tataaatatatatatatatataaaatgaatgtat                                                                                                   <  1:731685/128‑13 (MQ=255)
                                aaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataatgatatatgt                                                                                                  >  1:2315893/1‑117 (MQ=255)
                                aaaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑tatatatatatatatatatatataaagaaatatat                                                                                                  >  1:1146929/1‑117 (MQ=255)
                                 aaTTGTATTTAACTTTTTAATTTTACACACCCCTTTTTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTa                                                                                               <  2:3990573/128‑1 (MQ=255)
                                 aaTTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTa                                                                                               >  1:1966109/1‑128 (MQ=255)
                                   ttatatatAACTTTTT‑A‑TTTAAACACACCTTATTAAAAAATATAAAATTTTTTATATAATATTTAAAAAATATATAA‑A‑AAAT‑‑AT‑‑AATAAATATATATATATATATATATAATGCAATATGTAAATGaa                                                                                         <  2:3042607/121‑1 (MQ=255)
                                      ttaataaattttaaatttTACACACCCATTAATAAAAAATAAAATATTTGTTAAATTATATTCAAAAAATATATAACATACAATCAT‑‑‑‑‑‑‑‑TATATATATATATATATATAATGCAATATGTAAATGAAAat                                                                                      <  1:3385756/124‑1 (MQ=255)
                                       aaTTAACTTTTTCATTTTACACACCCATTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGaa                                                                                         <  2:4318717/128‑1 (MQ=255)
                                       aaTTAACATTTTAATTTTAAACACACATTATTAAAAAATAAAATACTTTTTACATAAGATTAAAAACATATATAAAATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGaa                                                                                         <  2:5406643/128‑1 (MQ=255)
                                       aaTTAAATTTTTAATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATAAGATTCAAAACATATATAACATACATTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGaa                                                                                         <  2:4628086/128‑1 (MQ=255)
                                          tatatttttAATTTTACACATTTCTTATTAAAAAATTAATTTATTTTTAATTACTTTTCAATACATATATTAATTATATTCAT‑‑TATATATATATTTATATTTTTTT‑‑‑‑TGCTATATGTAAATGAAAatat                                                                                    <  1:1404238/124‑1 (MQ=255)
                                             cTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATA‑AAT‑AAATATGTAATTTAatatatt                                                                                   >  2:2857349/1‑127 (MQ=255)
                                             cTTTTTCATTTTACACACACCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATg                                                                                   <  2:1710751/128‑1 (MQ=255)
                                                ttttaatttAAACACTCATTATTATTTAATATAATTCTTGTTAAATATTAATAAAAAAATATATAACATA‑AT‑‑A‑‑‑TATTTATATATATATATATATATATAATGTAATATGTAAATGAAAATATTTtata                                                                              <  2:5199374/122‑1 (MQ=255)
                                                 ttCATTATACAAAACAATTATTAAAAAAAAAAATTATTTTTAAATAAGATTCAAAAAATATATAATATA‑A‑‑‑AT‑‑TA‑AT‑TATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataata                                                                           <  2:4890176/128‑1 (MQ=255)
                                                    ataatACACACCCATTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataat                                                                            <  1:269556/124‑1 (MQ=255)
                                                     ttttACACACAAATTATTAAAAAATAAAATTCTTTTTATATACGATTCAAAAAATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataata                                                                           <  2:3842050/128‑1 (MQ=255)
                                                     ttttAAACACCCATTATTTTAAAATAAAATACTTGTTACATAAGATTCAAAAAATATATATCATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataata                                                                           <  2:5101967/128‑1 (MQ=255)
                                                      tttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTataat                                                                            <  1:4310259/128‑1 (MQ=255)
                                                      tttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAg                                                                          >  1:1655519/1‑128 (MQ=255)
                                                       ttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATA‑AAAAT‑AAATATATAAATTAAAATATTTTataatatc                                                                         >  1:654496/1‑126 (MQ=255)
                                                       ttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTAAATATGTAAATGAAAATATGGTataatata                                                                         >  1:5274159/1‑126 (MQ=255)
                                                       ttACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATAAAACATACATTCAT‑‑TATATATATATATATATAAATATAAAA‑‑AAATATATAAAATAAAATATTGTataatatc                                                                         >  2:5334411/1‑126 (MQ=255)
                                                         acacacCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTCAATATGTAAATGAAAATATGGTATAATAGCaa                                                                       >  1:4375796/1‑128 (MQ=255)
                                                              ccccTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACAATCAT‑‑TATATATATATATATATATATATATA‑‑‑‑AATATGTAAATAAAAAAATAATATAATATCatcatttaa                                                                >  1:818398/1‑120 (MQ=255)
                                                               caaatttaaaaaaaTAAAATATATTTTTTATAATATTATAAACATATATAAAATACAT‑‑‑T‑‑TAT‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTtat                                                               <  1:4274902/120‑1 (MQ=255)
                                                                ccTTATTAAAAAATAAAATAATTGTTACATACGATTCAAAACATATATAACATAAATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTta                                                                <  2:2634325/128‑1 (MQ=255)
                                                                 cTTATTAAAAAATAAAATAATTGTTAGATAATATTCAAAACATATATAAAATAAATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTtat                                                               <  2:646773/128‑1 (MQ=255)
                                                                   tattaAATAATAAAATAATTGTTACATAAGATTCAAAACATATATAACATACATTAAT‑‑‑‑‑‑TATATATATATATATATATATAATGAAATATGTAAATGAAAATATTGTATAATAGCAACCGTTTATAAAg                                                           <  1:4969446/128‑1 (MQ=255)
                                                                   tattaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATAAAATATGTAAATTAAAATATGTTATAATAGAAACCGTTtatat                                                             >  1:5341974/1‑127 (MQ=255)
                                                                    attaAAAAATAAAATAATTGTTACATACTATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATaaa                                                            <  1:3022244/128‑1 (MQ=255)
                                                                     ttaAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATTTAAATTAAAATATATTATAATAGCAAACGTTTATAAAg                                                           >  1:2818166/1‑128 (MQ=255)
                                                                      taAAAAATAAAATTATTGTTATATAATATTTAAAAAATATATAAAATATTTTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGt                                                          <  1:3072296/128‑1 (MQ=255)
                                                                         aaaataaaatACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAATGAAAATATTGTATAATATCAACCGTTTATAAAGTaaa                                                       >  1:2864961/1‑128 (MQ=255)
                                                                         aaaataaaatACTTGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATAT‑‑‑‑TTCAATATGTTAATTAAAATAAGATAAAATAGAAAAAGTATATAAAATaaaaa                                                     >  1:4583658/1‑128 (MQ=255)
                                                                           aatataatatTTTTTATATAATTTTTAATAAATATATAAAATATATTTAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGTTATAATAGCAACCGTTTATAAAGTaaaaa                                                     <  2:291325/128‑1 (MQ=255)
                                                                           aataaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGTTATAATAGCAACCGTTTATAAATTaaa                                                       >  2:2022515/1‑128 (MQ=255)
                                                                             taaaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATAAAA‑‑AAATATTTAAATGAAAATATGATATAATATAAAAATTTTATAAATTaaaaaaa                                                   >  2:79072/1‑128 (MQ=255)
                                                                               aaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATA‑AAT‑AAATATGTAAATTAAAATATGGTATAATATCAAAATTTTATAAAGTAAAAAAATa                                                 >  2:3202857/1‑128 (MQ=255)
                                                                               aaataCTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATa                                                 >  1:3715970/1‑128 (MQ=255)
                                                                               aaataCATTATACATAATTTTAAAAAAATATATAACATAGATTCA‑‑‑‑‑‑AAATATATATATATATATATAAAATGAAATATGTAAATTAAAATATTGAATAATAGCAACCGTTTATAAATTAAAAAAATAGt                                               <  1:243593/128‑1 (MQ=255)
                                                                                 ataCTTGTTACATACGATTCAAAACATATATAACATACATTCA‑‑‑‑ATATATATATATATTTATATATATTATGCAATTTGTAATTGAAAATATGGTTTAATATCAAACTATTATAAATTaaaaaatatta                                               >  2:948816/1‑123 (MQ=255)
                                                                                 ataATTGTTACATACGATTCAAAAAATATATAAAATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGt                                               <  1:4143771/128‑1 (MQ=255)
                                                                                    atttttAAATACGATTCAAAACATATATAACATAAATACAT‑‑TATATATATATATATATA‑A‑ATATAATGCAATATGTAAATGAAAATATTGTATAATACCAACCGTTTATAAAGTAAAAAAATAGTaaa                                            <  1:493134/124‑1 (MQ=255)
                                                                                     ttGTTATATAATATTTAAAAATTATATTACATA‑ATT‑‑T‑‑TAT‑TATATATATATATATATATATAATGCAATATGTAAATGAAAATATTGTATAATAGAAACAGTTTATAAAGTAAAAAAATAGTAAatat                                         <  2:405560/128‑1 (MQ=255)
                                                                                      tGTTACATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAata                                          <  1:3295394/128‑1 (MQ=255)
                                                                                       gTTACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATATGTAAATTAAAATATTATATAATATAAACCTTTTATAAATAAAAAAAATAGTAAatat                                         >  1:4443069/1‑128 (MQ=255)
                                                                                        ttACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATAAATATATATA‑‑‑AAAAT‑CAATAAGAAAATGAAAATATGATATAATATAAAACTAATATAAATTAAAAATATATTAAAtataat                                      >  1:1781800/1‑126 (MQ=255)
                                                                                        ttACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTAAATATGTAAATTAAAATATTTTATAATAGAAACATTTTATAAAATAAAaaaatataaaatatt                                        >  1:1009183/1‑127 (MQ=255)
                                                                                         tACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATA‑ATTAT‑‑‑ATATGTTAATTTATATATTGTATTATAGCATCAATTTATAATATAAATAATAAGTAAATAtagta                                     >  2:196137/1‑128 (MQ=255)
                                                                                         tACATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATTCAATATGTAAATTAAAATATGTTATAATAGCAACATTTTATAAAGTAAAAAAATATTAAATAtac                                       >  2:3785465/1‑128 (MQ=255)
                                                                                          aCATACTATTAAAAACATATATAAAATAAATTAAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtact                                      <  2:3467266/128‑1 (MQ=255)
                                                                                          aCATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtact                                      <  1:2965787/128‑1 (MQ=255)
                                                                                           cATACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGTTATAATAGAAACCGTTTATAAAGTAAAAAAATAGTAAATAtacta                                     >  2:1369285/1‑128 (MQ=255)
                                                                                           cATAAGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATAtacta                                     <  1:181828/128‑1 (MQ=255)
                                                                                            ataataTTAAAAAAATATATAACATAAATTCAT‑‑TATA‑A‑ATATATATATATATATATAATGAAATATGTAAATGAAAATATGGTATAAAAGCAACAGTTTATAAAGTAAAAAAATAGTAAAAAtactac                                    <  1:3568611/123‑1 (MQ=255)
                                                                                            aTACGATTCAAAACATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGAAATATGAAAATGAAAATATGGTATAATAGCAACCGTTTATAAATAAAAAAAATAGTAAATAtactac                                    >  2:4188225/1‑128 (MQ=255)
                                                                                             taagATTCAAAAAATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATAAAATATTTAAATGAATATATGTTATAATAAAAACAGTTTATAAATTAAAAAAATATTAAATATactact                                   >  2:3367943/4‑128 (MQ=255)
                                                                                             aaataTTAAAAACATATATAACATAAATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATactact                                   <  2:1810390/124‑1 (MQ=255)
                                                                                               ctaTTCTAAAAATATATAACATAAATTAAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATactact                                   <  1:4728085/126‑1 (MQ=39)
                                                                                                   tCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATA‑ATTA‑‑‑AATATATAAATAAATATATTTTATAAAAGAAACCAATTATAAATTAAAAAAATATAAAATATAATACATATATACt                           >  2:1626888/1‑128 (MQ=255)
                                                                                                        aCATATATAACATACATTCAT‑‑TATATATATATATATATATATA‑ATTA‑‑‑AATATTTAAATTAAAATATGTTATAATAGAAAAAGTTAATAAAGAAAAAAAATAATAAATATAATACTTATAtaataataa                      >  2:4769589/1‑128 (MQ=255)
                                                                                                        aCATATATAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATTGTATAATATCAACCTTTTATAAAGTAAAAAAATAGTAAATATACTAATTATTTACtaat                        >  2:3912999/1‑128 (MQ=255)
                                                                                                         aatatatAACATACATTAAT‑‑AATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACtaa                         <  1:5112795/127‑1 (MQ=255)
                                                                                                          atatatAACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATTATAGCAACCGTATATAAAGTAAAAAAATAGTAAATATACTACTTATTtaataataa                      >  2:1111225/1‑128 (MQ=255)
                                                                                                           tatataACATACATTCAT‑‑TATATATATATA‑‑‑A‑AAAAAAATAATCCAATATCTAAATGAAAATATGGTATAATAGCAACCTATAAAAAAGTAAAAAAATAGAAAATATACTACAAATATACTAATaaaaa                   >  2:743989/1‑127 (MQ=255)
                                                                                                           tatataACATACATTCAT‑‑‑‑‑‑TATATATATATATATATATATAATGCAATATTTAAAAGAAAATATGGTATAATAGAAAAAGTTTATAAATATAAAAAATAGTATATATACTAATTATGTACtaaaactat                   >  2:1493586/1‑122 (MQ=255)
                                                                                                           tacataACATACATTCAT‑‑TATA‑‑‑A‑ATATATATATAAATATAATCAAATATATAAAATAAAATATTTTATAATAGCAAACGTATATAAAGTAAAAAAATATTAAATATAGTAATTATTTACTAATAAAAt                   >  1:5012225/4‑128 (MQ=255)
                                                                                                            atataACATACATTCATTATATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACAGTTTATAAATAAAAAAAAAATAAAATATAATACTTATTTACtaat                        >  2:306133/1‑128 (MQ=255)
                                                                                                               taACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt                 <  1:4678666/128‑1 (MQ=255)
                                                                                                               taACATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt                 <  2:2315893/128‑1 (MQ=255)
                                                                                                                aaCATACATTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATTGTATAATAGCAACCTTTTATAAAGTAAAAAAATAGTAAATAAACTACTTATTTACTAATAAAATCTa                >  1:1593211/1‑128 (MQ=255)
                                                                                                                 tatatcataaat‑‑tattTATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCt                 <  2:4122347/118‑1 (MQ=255)
                                                                                                                  acatattgcat‑‑tATATATATATATATATATATATATAAATAAATATATATAAAAATATTTTTTATAATATAAACATTTAATAAAAAAAAAATATATAAAATATAAATAATATTAAATAATATAATCTa                >  2:5511549/9‑128 (MQ=2)
                                                                                                                    tacatTCATTATATATATATATATATATATATATATAAATCAATATGTAAATGAAAATATGGTATAATAGCAACATTATATAAAGTAAAAAAATAGTAAATATACTAATTATATACTAATAAAAtata                >  2:4846871/1‑128 (MQ=255)
                                                                                                                    tacatTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTAATTATTTAATAATAAAATCTAtt              >  2:3281406/1‑128 (MQ=255)
                                                                                                                    tacatTCAT‑‑‑‑TATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGTTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTAtttt            >  1:1189031/1‑128 (MQ=255)
                                                                                                                        taaat‑‑tAAATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACAGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTttta          <  2:3608388/125‑1 (MQ=255)
                                                                                                                                atatatatatatatatatatatataATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTaaa    <  1:2151167/128‑1 (MQ=255)
                                                                                                                                |                                                                                                                                 
ACCAGTTGTAATAACTAATCCAAATGAACTTAAAATTGTAATTAACTTTTTCATTTTACACACCCCTTATTAAAAAATAAAATACTTGTTACATACGATTCAAAACATATATAACATACATTCAT‑‑TATATATATATATATATATATATATAATGCAATATGTAAATGAAAATATGGTATAATAGCAACCGTTTATAAAGTAAAAAAATAGTAAATATACTACTTATTTACTAATAAAATCTATTTTTATTTAAAAA  >  CP016816/311024‑311279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑