New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 165253 =896 (0.480)568 (0.350) 135/218 11.9 43.8% intergenic (+217/‑325) JCVSYN2_00665/JCVSYN2_00670 tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
?CP016816 = 165249 676 (0.420)intergenic (+213/‑329) JCVSYN2_00665/JCVSYN2_00670 tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 1336 total aligned reads displayed.

GATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAA  >  CP016816/165122‑165376
                                                                                                                                 |                                                                                                                                  
gATAATATTTTGTTTCATTATTTTTTAGCATTTGTATGAATTAGTAATAAAATAAAAATATTATGTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGc                                                                                                                                    <  1:2689400/128‑1 (MQ=255)
 ataataTTTATTTTAATTAATTTTTAGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTTGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAAAAGCt                                                                                                                                   <  1:2932014/128‑1 (MQ=255)
  taataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAATAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATTCAAATTATTAAAAAATAAATTTGAACTTTTAAAAAATAGcct                                                                                                                                  >  2:2500471/1‑126 (MQ=255)
  taataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtt                                                                                                                                  >  2:1527808/1‑128 (MQ=255)
   aataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAATAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATAGAttt                                                                                                                                 >  1:760408/1‑128 (MQ=255)
    atattttcgtttaTTAATTTATCGCCCTTTTATGAATTAGTTATAAAATAAAAATATTATATTTTTATATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAAAAGCtttt                                                                                                                                <  2:3400990/116‑1 (MQ=255)
    atatTTAGTTTCATTAATTTATCTCAATTTTATGAATTATTAATAAAAAAAAAATATTATCTTTTTTTATATTTTTTTTATTTGCAAATTTTTAAAAAATTAAATTGAACTTGTAAAAAAAAGCtttt                                                                                                                                <  1:412488/128‑1 (MQ=255)
     tatTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATAAATTTGAACTTGTAAAAAATAGCttttt                                                                                                                               >  2:1615299/1‑128 (MQ=255)
       tttAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttt                                                                                                                             >  2:512600/1‑128 (MQ=255)
       tttAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttt                                                                                                                             >  2:752321/1‑128 (MQ=255)
           gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttt                                                                                                                         >  1:3042609/1‑128 (MQ=255)
           gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttt                                                                                                                         >  1:1216960/1‑128 (MQ=255)
              tCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttttttttttttt                                                                                                                      >  1:2435799/1‑128 (MQ=255)
                aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGAtttttttttttttttt                                                                                                                    >  2:854600/1‑128 (MQ=255)
                     tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTtataa                                                                                                               >  1:1385872/1‑127 (MQ=255)
                       tATCGCACATGTAATAATTAGTAAGAAACTAAAACAAATATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATACCTTTTTTTTTTTTTTTTtataatg                                                                                                             <  1:655496/128‑4 (MQ=255)
                        atagCACTTTAATTAATTATTAAGAAACAAAAACTATTTTCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATATCTTTTTTTTTTTTTTTTtataatgg                                                                                                            <  1:1991286/125‑5 (MQ=255)
                          cGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttttttttataatttaaa                                                                                                          >  1:468546/1‑118 (MQ=255)
                           gcaattgtttttattattAATAAAATAAAAATATTATTTTTTTTTTTATTTTTTGTTTTTTTAAATTTTTTAAAAATTTATTTTTAATTTTAAAAAAT‑‑TTCTTTTTTTTTTTTTTTTTATAATGGaaa                                                                                                       <  2:2383633/116‑1 (MQ=255)
                              cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAatat                                                                                                    >  2:2121555/1‑128 (MQ=255)
                               ttGTATTAATTATTAATAAAATAAAAATATTATATTTTTAGATATTTTTTTTATATTCTAATTTTTAAAAAATTAATTTTTACTTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATaa                                                                                                  <  2:682744/128‑1 (MQ=255)
                               ttGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGAAAAtata                                                                                                   >  2:3055011/1‑128 (MQ=255)
                               attatttaaTTTGTAATAAACTTAAAATATTATATTTTTATTTATTTTTTGTTTATTCAAATTTTTAAAAAATTAATTTTTACTTTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAAtata                                                                                                   <  2:2286812/121‑1 (MQ=255)
                                 ttttttatttttAAGAAAATAAAAAAATTTTAATTTTATATATTTTTTGTTTAATCAAATTTTTAAAAAATTAATTTTTAATTTTAAAAAAT‑‑TTCTTTTTTTTTTTTTTTTTATAATGGAAATATaaa                                                                                                 <  2:1265254/117‑1 (MQ=255)
                                  tattaattattaatAAAATAAAAATATTATTTTTTTTTATATTTTTTGTTTATTGAAAATTTTAAAAAATTAATTTTAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  1:3102406/128‑1 (MQ=255)
                                   tttaaatattaataaAATAAAAATTTTATATTTTTATATATTTTTTTTATATTCAAAATTTTAAAAAATAAATTTGAACTTTTAAAAAAAAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  2:1320332/119‑1 (MQ=255)
                                   aTGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTAAAATTTAAATATAAAt                                                                                                >  1:3536129/1‑128 (MQ=255)
                                         tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATTAAAATAAAAATTTTAgta                                                                                         >  1:3155713/1‑126 (MQ=255)
                                          attaataatcaaaaaataTTTTTTTTTTTTATTTTTTTTTTATATTCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTa                                                                                        <  2:1884642/117‑1 (MQ=255)
                                          attaataaACTAAAAATATTTTATTTTTTTATATTTTTTTTTTTTTCAAATTTTTTAAAAATTTAATTGTACATGTTAAAAATTTCGTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt                                                                                         <  1:3474399/126‑1 (MQ=255)
                                          attaaacaacaaaaacttTTATATTTTTATATATTTTTTGTTTTTTCAAAATTTTTAAAAATTAATTTTAAATTTTAAAAAAAAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAt                                                                                       <  1:3203880/121‑1 (MQ=255)
                                          aGTAAGAAACTAAAAATATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAttt                                                                                     <  1:1888215/128‑1 (MQ=255)
                                           ttaataatataaaaataTTTTATTTTTATATATTTTTTGTATATTCAAATTTTTAAAAAATTAAATTTAAATTTTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAt                                                                                       <  2:378117/119‑1 (MQ=255)
                                                taaataaaaataTTATATTTTTATTTATTTTTTGTATATTCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑TGTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTttgt                                                                                  <  2:1469391/124‑1 (MQ=255)
                                                aaactaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATTTATTttg                                                                                   >  1:3653069/1‑128 (MQ=255)
                                                aaactaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGTTATtttttt                                                                                >  2:2864805/1‑128 (MQ=255)
                                                  aattaaaataTTATATTTTTTTTTTTTTTTTTTATATTAAAATTTTTAAAAAATTTATTTTAAATTTTAAAAAATATCTTTTTTTTTTTTTTTTATATAATGGAAATATAAATTTTAGGTATTttgtt                                                                                <  2:59227/124‑1 (MQ=255)
                                                   ctaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTTGGTATtttttttt                                                                              >  2:3192550/1‑126 (MQ=255)
                                                    taaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATGTAAtttttttta                                                                             >  2:2717354/1‑125 (MQ=255)
                                                    taaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGTAAATAAAATTTTTAGTTATttttttttaa                                                                            >  2:927433/1‑124 (MQ=255)
                                                     taaaataTTAATTTTTTACTTTTTTTTTGTTTATTCAATATTTTAAAAAAAAAAATTCAAATTTTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTa                                                                           <  1:1145545/127‑1 (MQ=255)
                                                     aaaaataTTATTTTTTTATTTATTTTTTTTTTATTTAAATTTTTTAAAAATTAATTTTTAATTTTAAAAAATATCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTc                                                                             <  1:15800/128‑1 (MQ=255)
                                                      aaaataTTATATTTTTATTAATTTTTTTTATATCTAAATTTTTAAAAAATTAATTTTAATTTTTAAAAAAAA‑‑‑‑TCATTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAg                                                                         <  2:2052510/128‑1 (MQ=255)
                                                       aattattattatTTTTTATTTTTTTTTTATATTCAAATTTTTAAAAAAATAAATTTAACATTTTAAAAAT‑‑TTCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTaa                                                                          <  1:3440122/125‑1 (MQ=255)
                                                        agatttatATTTTTATTTATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTTAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAg                                                                         <  1:3790435/124‑1 (MQ=255)
                                                         ctaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTAAAATATAAAATTTAGTAATTTTTTTTTATaata                                                                        >  2:1019426/1‑126 (MQ=255)
                                                          tattatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAAAATAAATTTTAGGTATTTTTTTTAATAAGTa                                                                       >  1:2383950/1‑128 (MQ=255)
                                                           attatATTTTTTTATATTTTTTTTATATTCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCt                                                                    <  1:2037905/128‑1 (MQ=255)
                                                            ttatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATATTGAAATTATAATtttttgtttttttgttttatatttata                                                                     >  2:311706/1‑117 (MQ=255)
                                                             tatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTAAAATAAAAATATAAATTTTAGATATtttttttaaaaattataa                                                                    >  1:1470273/1‑116 (MQ=255)
                                                              ttttttttATATTTTTTTTTTATATTCAAAATTTTAAAAAATTAAATTTAAATTTTAAAAAAAATCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCt                                                                    <  1:3385334/125‑1 (MQ=255)
                                                              atCTTTTTAGATATTTTTTGTATATGCAAATTTTTTAAAAATTAATTTGCTCTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATTTAAATTTTAGTATTTTTTGTGTATAAGTTTCTa                                                                   >  2:2784462/1‑128 (MQ=255)
                                                                  ttttATATATTTTTTTTATATTTAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaa                                                              <  1:534971/128‑1 (MQ=255)
                                                                  ttttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATAATGTAAATAAAAATTTTAGTTTTTTTTTTGACTAATTAAATaaaa                                                                >  2:2964147/1‑128 (MQ=255)
                                                                  ttttAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATGTATTTTGTTTTATAATTATATaaaaaa                                                              >  2:4473/1‑128 (MQ=255)
                                                                      tattatTTTTTTTTTATATAAATTTTAAAAAAATTTTTTTTTAATTTTAAAAATA‑‑TATTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                          <  2:3244267/125‑1 (MQ=255)
                                                                      atttatTTTTTTTATATTGAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAATA‑‑‑TATTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                          <  2:3332279/125‑1 (MQ=255)
                                                                       tatatTTTTTTTATATTAAAATTTTTAAAAAAATAATTTTAAATTTTTAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                          <  1:2295147/127‑1 (MQ=255)
                                                                       gATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTTTAAAAAATAG‑‑ATTTTTTTTTTTTTTTTTATAATTTAAAAAAAAATTTAAATTATTTTTTTATATAATTATAaaaaaaaaaat                                                          >  1:2630889/1‑125 (MQ=255)
                                                                        atatTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTTAGTAATTTTTTTTTATAATTATATAAAAAAATaaa                                                         >  2:1956974/1‑126 (MQ=255)
                                                                        atatTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTTAAAAAAAAATTATAGATATTTTTTTGTTTAAGTATATAAAAAAATATaa                                                        >  2:2583640/1‑128 (MQ=255)
                                                                           ttttatGTATATTCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAATA‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGa                                                    <  2:1087170/128‑1 (MQ=255)
                                                                            tttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTAAAATGTAAATAAAAATTTTAGTATTTTTTTTTTAAAAGTAAATAAAAAAATATaaat                                                      >  1:2116296/1‑127 (MQ=255)
                                                                            tttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTATTTTTTTTTCTAATTATATAAAAAAATATaatgt                                                     >  1:945293/1‑125 (MQ=255)
                                                                            tttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTATGTATTTTTTTGTATAAGTATATAAAAAAATAaaaatta                                                    >  1:1283845/1‑125 (MQ=255)
                                                                              ttttttttattaaaaTTTTTTAAAAATTAATTTTAAATTTTATAAAATA‑‑TATTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGa                                                    <  1:1009766/116‑1 (MQ=255)
                                                                               ttttattataaaaaTTTTAAAAAATTAATTTTAAATTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                  <  1:3985687/117‑1 (MQ=255)
                                                                               ttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTAT‑‑TGTAATTAAAATTTTTAGTTTTTTTTTTTAATAATTTTATAAAAAAATAAAAGTaaaa                                                 >  1:3311861/1‑128 (MQ=255)
                                                                               ttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATTTATTTTTTTTAATAATTTTCTAAAAAAATATAAAGTaa                                                   >  1:3598077/1‑128 (MQ=255)
                                                                                tttataTTCAAATTTTTAAAAAAATAATTTGTAATTGTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaaa                                                <  2:363030/126‑1 (MQ=255)
                                                                                tGTATATTTAATTTTTTAAAAAATTAATTTTAAATTTTATAAAATA‑‑TATTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaa                                                 <  1:3915845/128‑1 (MQ=255)
                                                                                tGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATAAAAATTTTATGTTTTTTTTTGTATAATTATATAAAAAAATAAAAATTaaaa                                                 >  1:710882/1‑128 (MQ=255)
                                                                                 gTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTAAAATTAAAATTTAAGTTTTTTTTTTGTATAATAATATAAAAAAATAAAAAGAaaaaaa                                               >  1:2865191/1‑128 (MQ=255)
                                                                                    ttttgtaaaTTTTTAAAAATTTTATTTGAAATTTTAAAAAAT‑‑TTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                             <  1:839056/122‑1 (MQ=255)
                                                                                     tatttaaaTTTTTAAAAAATTAATTTGATTTTTTAAAAATTA‑‑‑‑TATTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATAtt                                          <  1:2779001/123‑1 (MQ=255)
                                                                                       tGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAATTTTTAGGTATTTTGTTTTATAATTATATAAAAAAATATAAAGGAAAAAATAtt                                          >  1:2249675/1‑128 (MQ=255)
                                                                                         cAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATATTGAAAAATTAAATTTTTGTTTTTTTTTTTTTAATTTAATAAAAAAAAAAAAATAAAAAAATTATTGt                                        >  2:3456213/1‑128 (MQ=255)
                                                                                           aaTTTTTAAAAAATTTATTTTAAATTTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTa                                      <  1:1611582/128‑1 (MQ=255)
                                                                                             aTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGGTTTTTTTTTGTGTAATTTTATAAAAAAATATAAAGTAAAAAATATTTTTa                                      >  1:892228/1‑128 (MQ=255)
                                                                                             aTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAttt                                                                                     >  1:3239166/1‑81 (MQ=255)
                                                                                             aTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATATTGTAAATTTAAATTTTAGTTATTTTGTTTTATAATTATATAAAAAAATATAATTAAAAAAATAttttataaa                                   >  1:598269/1‑121 (MQ=255)
                                                                                                   aaaTAATTAATTTTTAATTTTTAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTaa                               <  1:3721785/128‑1 (MQ=255)
                                                                                                    aaaaattatttTGAACTTGTAAAAAATAG‑‑GTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAAt                              <  1:1428890/125‑1 (MQ=255)
                                                                                                     aaaattaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATGGAAATATAAATTTTATTAAATTTTTTGAAATATTAAATAAAAAATTAAAAATTAATAAAAATTGTTAAATGTAATa                             >  2:1818324/3‑128 (MQ=255)
                                                                                                      aaattaattTTTATTTTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATAc                            <  2:3872069/127‑1 (MQ=255)
                                                                                                      aaattaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTTGTTTTTTTTTTTTTAAATTAAATAAAAAAAAAAAAAGTAAAAAATTTTTTTAAAATTaaaaa                            >  2:3923410/2‑125 (MQ=255)
                                                                                                       aattaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATTGAAATATAAATTTTATTTTATTTATTTTATAATTATATAAAAAAATTAAAAGGTAAAATTATtttttattttatttat                           >  1:2552410/1‑116 (MQ=255)
                                                                                                        attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATAAAAATTTTAGGTATTTTTTTGTATAATTTTATAAAAAAATAGAAAGGAAAAAATTTTGTTAATAGTTataata                          >  2:3713625/1‑128 (MQ=255)
                                                                                                        attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTTAGTTTTTTTTTTTTATAATTAAAAAAAAAAATAAAAATTAAAAAATATTTTTAAATTTAATaaaa                          >  2:1188519/1‑125 (MQ=255)
                                                                                                        attaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATATTGTAAATTAAAATTTTTGGTATTTTGTTGTAAAATTATATTAAAAAAAATAAAGGAAAAAATATTTTTAAAATTAATaaaaa                         >  1:2174382/1‑124 (MQ=255)
                                                                                                         ttaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATATTTAAAAATAAATTTTTTGTATTTTTTTGTTAAATTATATAAAAAAATAAAAAATAAAAAAAATTTTTAAATTTAATTATaaa                        >  2:1728481/1‑128 (MQ=255)
                                                                                                         ttaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAAAATTGAAAAATAAATTTAAGGTTTTTTTTTTTATAAGTATATAAAAAAAATTAAATGAAAAAATATTTTAAAAAataataaaaa                         >  2:352482/1‑124 (MQ=255)
                                                                                                         ttaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTAATTTTTTTTTCAAATTATCTAAAAAAATAAAAAGAAAAAAATATTTTTAAAAGTAAAAATaaa                        >  2:1409624/1‑128 (MQ=255)
                                                                                                          taattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTATTGGAAATAAAATTTTTAGGTTTTTTTTTGTATATTTATATAAAAAAATTTAAAGAAAAAATTTTTTTaaaatttattaataa                        >  1:3842527/1‑117 (MQ=255)
                                                                                                               tGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTATAAAATGTAAATATAAATTTTAGTTTTTTTTTAGTAAAATTAAAATAAAAATTAGAAATGAAAAAATATTGTTAAAATTATTAATAAAataa                   >  2:2218268/1‑126 (MQ=255)
                                                                                                                gAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAATTATAAATTTTAGGTATTTTTTTTTATATTTATATAAATAAATATAAATCAAAAAATTTTTTTAAAATTAAATCTAAAATTAttt                >  1:1045500/1‑128 (MQ=255)
                                                                                                                   cTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCAAAAAAAATATAAAGAAAAAAATATTGTTAAAATTAAAAAAAAAATTATTAAAt             >  1:1729418/1‑128 (MQ=255)
                                                                                                                     tttAAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATg            <  1:134091/126‑1 (MQ=255)
                                                                                                                     tGTAAAAAATAGCTTTTTTTTTTTTTTTTTTAAAGGTAAAATTAAATTTATGTTTTTTTGTTGGTAATTAAATTAAAAAAAATAAAAGAAAAAAATTTTTTAAAAATAATAAAAAAATTTATTTAAtt            >  2:4021898/1‑127 (MQ=255)
                                                                                                                       tAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTTTTTTCTAATTATATAAAAAAATATAAAGGAAAAAATATTTTTAAAATTAATACTAAAATTATTTAATGtt          >  1:1817466/1‑128 (MQ=255)
                                                                                                                                 |                                                                                                                                  
GATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAA  >  CP016816/165122‑165376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.