Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681634,9451.A44.1% 126.8 / inf 1466intergenic (+49/+117)JCVSYN2_00105/JCVSYN2_00110ABC transporter permease/cell division protein FtsH
Reads supporting (aligned to +/- strand):  ref base . (293/525);  new base A (599/47);  total (893/573)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.64e-20

Only 100 of 1658 total aligned reads displayed.

CTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGT  >  CP016816/34818‑35069
                                                                                                                                      |                                                                                                                                      
  ttACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑aa                                                                                                                                    >  1:1002043/1‑128 (MQ=255)
  ttACTTATTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGCTTTTATTA‑TTT‑AC‑TA‑TT‑‑T‑‑‑aa                                                                                                                                    >  1:2658968/1‑128 (MQ=255)
      ttcttTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAATATTAAACCAAATACAATGTATATTTTTTTTTTA‑TTT‑AA‑TA‑TT‑‑T‑‑‑aa‑a‑aaa                                                                                                                              >  2:1732057/1‑128 (MQ=255)
            aTGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATGATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑aa‑a‑aaa‑a‑aaaaa                                                                                                                      >  1:3182009/1‑128 (MQ=255)
              ttcctttataaaaaaTAGTAATAAATTCTTAACCAATTAAAATTCTAAGTTAAGTTTATTAATAATAAAATATTAAACAAAATAAATTGTGTTTGGTTTTTTTA‑TTT‑AA‑TA‑TT‑‑T‑‑‑aa‑a‑aaa‑a‑aaaaaaa                                                                                                                    <  2:460239/118‑1 (MQ=255)
              gAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGATAAGTGAAGTTGATGAATAATAAAATATTAAACCAAATACATTGTATTTGTTTTTTTTA‑TTT‑AC‑TA‑TT‑‑T‑‑‑aa‑a‑aaa‑a‑aaaaaaa                                                                                                                    >  1:522522/1‑128 (MQ=255)
               tttttAAACAAAAATAGTATGAAATTCTGAACCAAGTAAAATGATAAGTTAATTTGTTTAATAAAAAAACATTAAACCAAAAAAATTGTTTTTGGTTTTTTTA‑TTA‑AC‑TA‑TT‑‑G‑‑‑aa‑a‑aaa‑a‑aaaaaaaa                                                                                                                   <  1:3316037/126‑1 (MQ=255)
               tgTTTCAAAAAAAACTTTAATAAATGATTAACCTATTAAAATCGTAATTTAATTTGATTAAAAAAAAAATTTTAAACAAAAAAAATTTTGTTTGGTTTTTTTA‑TTT‑AA‑TA‑TT‑‑T‑‑‑aa‑a‑aaa‑a‑aaaaaaaa                                                                                                                   <  2:289792/127‑1 (MQ=255)
                 tttCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑aa‑a‑aaa‑a‑aaaaaaaaaa                                                                                                                 >  1:3864848/1‑126 (MQ=255)
                   tCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑‑A‑A‑AAA‑A‑AAAAAAAataata                                                                                                              >  1:3417388/1‑128 (MQ=255)
                    caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATTCTAAGTTAAGTTTATGAATAATAAAAGATTAAACCAAATACATAATAATTATTTTTTTTA‑TAT‑AC‑AA‑TA‑‑G‑‑‑aa‑a‑aaa‑a‑aaaaaaaaaaaaa                                                                                                              >  1:2905161/1‑126 (MQ=255)
                    caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑aa‑a‑aaa‑a‑aaaaaaaaataat                                                                                                              >  1:3963728/1‑123 (MQ=255)
                        aaaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTTGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑‑A‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAAtt                                                                                                       >  1:1981260/1‑128 (MQ=255)
                          aaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAATATTAAACCAAAAACATTAATTATAATAATATTA‑TTT‑AC‑AA‑Ta‑‑a‑‑‑aa‑a‑aaa‑a‑aaaaaaaaaaaaaaaaaaa                                                                                                        >  2:1641311/1‑120 (MQ=255)
                           aaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑AA‑A‑AAA‑A‑AAAAAAAaaaataatataaa                                                                                                       >  1:3009627/1‑121 (MQ=255)
                               gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑T‑‑‑AA‑A‑AAA‑A‑AAAAAAAAAAAAA‑‑AAAttttaaaa                                                                                                 >  2:4028874/1‑123 (MQ=255)
                               gTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GAA‑AA‑A‑AAA‑A‑AAAAAAAATAAAA‑‑TAAtttaaa                                                                                                   >  1:3364759/1‑125 (MQ=255)
                                  ataaaTGAGGAACCAATTACAATGCTAATTGAAGTTTTTTAATAATAAAATATTAAACCAAAAACATTGTGTTTGGTTTTTTTA‑TTT‑AA‑TATTT‑‑A‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACt                                                                                              <  2:3284869/126‑1 (MQ=255)
                                   gAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑AA‑A‑AAA‑A‑AAAAAAAAAAATA‑‑TAATTTT‑AATAatat                                                                                            >  1:1444937/1‑128 (MQ=255)
                                    aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACtaaa                                                                                           >  2:3768391/1‑126 (MQ=255)
                                    aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑AA‑A‑AAA‑A‑AAAAAAAAAAAAA‑‑TAATTTA‑AATAAtata                                                                                           >  2:3332071/1‑128 (MQ=255)
                                     aattcttacccAATTACAATGGTATGTGTATTTTTTTAAAAATAAAATATTAAACCAAATACATTGTTTTTGGTTTTTTTA‑TTT‑ACATT‑TT‑‑A‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACtata                                                                                           <  1:326945/119‑1 (MQ=255)
                                     aaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATaa                                                                                          >  1:1077575/1‑128 (MQ=255)
                                      aTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑AA‑A‑AAA‑A‑AAAAAAAAAAATA‑‑TAATTTG‑CATAATATaaa                                                                                         >  1:4006129/1‑128 (MQ=255)
                                        gCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑T‑‑‑AA‑A‑AAA‑A‑AAAAAAAAAAAAA‑‑AAATTTT‑AAAAATATaaaaa                                                                                       >  1:2946755/1‑128 (MQ=255)
                                        gCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAAAAATA‑‑TAATTTG‑CAtaaaataaaa                                                                                        >  1:457956/1‑128 (MQ=255)
                                           taaaaaaGTAAAATGATATTTGAATTTTATTAATAATAAAATATTAAAAAAAATAAATTTTGTTTGGTTTTTTTT‑TTT‑AC‑TATTT‑‑A‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAAt                                                                                     <  1:1370511/123‑1 (MQ=255)
                                             aCCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGTTTTTTTTA‑TTT‑AC‑TA‑TTA‑A‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑AAATTAG‑CATAATATAAAAAAttt                                                                                   >  1:2445758/1‑127 (MQ=255)
                                                  gTACAATGCTAAGTGAATTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AA‑TA‑TT‑‑G‑‑‑AAGA‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGttttt                                                                              <  2:1391593/128‑1 (MQ=255)
                                                   tACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTT‑CATAAAAAAAAAAAATtttttta                                                                             >  2:846767/1‑127 (MQ=255)
                                                      aatgttattttaaGTTGTTAAATATTAAAATATTAAAACAAATAAATTTTTTTTGTTTTTTTTA‑TTT‑AA‑TT‑TTTAA‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCaa                                                                           <  2:3467768/117‑1 (MQ=255)
                                                      aaTGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GAA‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑AAATTTG‑AATAATATAAAAAATttttttaaaa                                                                           >  1:3114557/1‑124 (MQ=255)
                                                      aaTGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAAAAAAA‑‑AAATTTT‑AATAAATTAAAAAAATTTTTTTaaaa                                                                          >  1:1290327/1‑128 (MQ=255)
                                                       aTGCAAAGTTTATTTTATTAAAAATAAAATAATAAACCAAATAAATTTTTTTTGGTTTTTTTA‑TTT‑AA‑TATTT‑‑A‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAAt                                                                         <  2:1304261/128‑1 (MQ=255)
                                                        tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GAA‑AA‑A‑AAA‑A‑AAAAAAAATAAAA‑‑AATTTTG‑AATAATAAAAAAAATTTTTTTTaaaaa                                                                         >  2:3976578/1‑127 (MQ=255)
                                                        tGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑AA‑A‑AAA‑A‑AAAAAAAAAAATATTTATTTTG‑CATAAAATAAAAAATTGTTTTTAAAAt                                                                         >  1:1706850/1‑128 (MQ=255)
                                                         gCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAAAAAAA‑‑TAATTTC‑AAAAAAATAAAAAATTTTTTTACaaaaaa                                                                       >  2:2112952/1‑128 (MQ=255)
                                                            aaGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAAATTT‑AATAATATAAAAAATttttttaaaaaaaataa                                                                    >  1:2345932/1‑117 (MQ=255)
                                                             aGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAAAA‑‑TAATTTT‑CAAACTATAAAAAATTATTTTTCAAATAAGTAt                                                                   >  2:3406297/1‑128 (MQ=255)
                                                              gTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑AATACTAAAAAAAAATGTATTTAAAATAattatt                                                                  >  1:95770/1‑128 (MQ=255)
                                                                gatttttattaataaaAAAATATTAAAACAAATAAATTGTGTTTTGTTTTTTTA‑TTT‑AA‑TA‑TT‑‑T‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAg                                                               <  1:1543384/118‑1 (MQ=255)
                                                                  tttttattaaaaataaAATATTAAACCAAATAAATTGTGTTTGGTTTTTTTA‑TTT‑AA‑TA‑TT‑‑T‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGa                                                             <  2:3835128/117‑1 (MQ=255)
                                                                    ttGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTATATTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAAAA‑‑TAATTTG‑CTTACTATAAAAAATTGATTTAAAAAAAATTATAAAGGAg                                                            >  1:3601167/1‑128 (MQ=255)
                                                                     tgatgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑AA‑A‑AAA‑A‑AAAAAAAAAAAAA‑‑TAATTTT‑AATAATAAAAAAAATTTTTTTTAAAATAattattaataaata                                                          >  2:1516530/1‑120 (MQ=255)
                                                                       atgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑AATAATATAAAAAATTTTTTTTAAAAAAATTATTaagaagaat                                                         >  1:870518/1‑125 (MQ=255)
                                                                        tgaATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GAA‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTA‑AATAAAAAAAAAAATTATTTTAAAAAAAATAATTCaaaattaa                                                         >  1:2813085/1‑121 (MQ=255)
                                                                          attttaatattaTTAAAACAAATAAATTTGTTTTTGTTTTTTTA‑TTTAAA‑TT‑TTA‑A‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAAt                                                      <  1:2144753/117‑1 (MQ=255)
                                                                             aataaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑AATAATATAAAAAATTTTTTTTAAAATATTTATTAATTATT‑AAATTTaa                                                  >  1:3810553/1‑128 (MQ=255)
                                                                             aataaAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑AATAATATAAAAAATAGTTTTTAAATTAAGTATTAATTATT‑AAATTTaa                                                  >  1:3524014/1‑128 (MQ=255)
                                                                                     aTTAAAAAAAATAATTTTTGTTTGGTTTTTTTT‑TTT‑AA‑TT‑TT‑‑T‑‑‑AA‑A‑AAA‑A‑ATAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAag                                         <  1:2503015/128‑1 (MQ=255)
                                                                                      ttAAACAAAATACATTGTTGTTGGTGTTTTTT‑TTT‑AC‑TA‑TT‑‑T‑‑‑AA‑ATAAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAag                                         <  1:3566256/128‑1 (MQ=255)
                                                                                      ttAAAAAAAAAAAATTTTTTTTGGTTTTTTTA‑TTT‑AA‑TATTT‑‑A‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAag                                         <  2:318161/128‑1 (MQ=255)
                                                                                       tAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTT‑GATAATTTAAAAAATTTTTTTTAAAATAATTATTAATGATT‑TAATTTAAAAAACaaaaa                                        >  1:3742609/1‑126 (MQ=255)
                                                                                        aaaCCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GAAAAA‑A‑AAA‑A‑AAAAAAAAAAATT‑‑TAATTTC‑AATAAAAAAAAAAATTTTTTTTAAAAAAATTAAAAATAATT‑AAAATTAAAAAACaaaa                                         >  2:2506376/1‑127 (MQ=255)
                                                                                        aaaCCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTC‑AATAATATAAAAAATTTTTTTAAAAATAATTATAAAGTATT‑AAATTTAAAAAACaaatat                                       >  2:3897217/1‑125 (MQ=255)
                                                                                        aaaCCAAATACAATGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATAATATAAAAAATTTATTTTAAAAAAATTATAAAGAATT‑AAATATAAAAAACAAaaag                                       >  1:676271/1‑128 (MQ=255)
                                                                                          aacataTACATTTTTTTTGGTTTTTTTT‑TTT‑TA‑TA‑TT‑‑T‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGATTta                                    <  2:1940571/123‑1 (MQ=255)
                                                                                           ccAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAAAAATA‑‑AAATTTG‑AAAAATAAAAAAAATTTTTTTAAAAATAATTTTACACATTA‑AAATTTaaaaaaaaaatattaa                                    >  1:2586465/1‑118 (MQ=255)
                                                                                           ccAAATAAATTGTGTTTTGTTTTTTTA‑TTT‑AC‑TATTT‑‑A‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTta                                    <  2:753121/128‑1 (MQ=255)
                                                                                           acAAATAATTTGTGTTTGTTTTTTTTA‑TTT‑AC‑TT‑TT‑‑G‑‑‑‑T‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTtata                                  <  2:651931/127‑1 (MQ=255)
                                                                                            cAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAAAAAAA‑‑AAATTTGACAAAAAAAAAAAAATT‑TTTTTAAAAAAAAAATAAAGAATT‑AAATTAAAAAAACCAAAAGTtat                                   >  2:3703390/1‑128 (MQ=255)
                                                                                            aaattACATTTTGTTTGGTTTTTTTA‑TTT‑AA‑TA‑TTTAA‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑GAATTTAAAAAACCAAGATTta                                    <  1:1904296/124‑1 (MQ=255)
                                                                                             aaataaatTGTGTTTGGTTTTTTTT‑TTT‑AC‑TATTT‑‑A‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTtata                                  <  2:1836218/128‑1 (MQ=255)
                                                                                             aaaTATATTGGGTTTGGTTTTTTTA‑TTT‑AT‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAAAA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTAATCAGGAGT‑AAATTTAAAAAACCAAGAGTtata                                  <  2:2062716/128‑1 (MQ=255)
                                                                                             aaaTACATTGTGTTTTTTTTTTTTT‑TTT‑AT‑TATTT‑‑A‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTtata                                  <  2:280688/128‑1 (MQ=255)
                                                                                             aaaTACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAAAAAAA‑‑TAATTTT‑CAAAAAATAAAAAATTTTTTTTAAAAAAATAATAAAAGATT‑AAATTTAAAAAACAAATATTtata                                  >  1:812205/1‑128 (MQ=255)
                                                                                             aaaTACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑AA‑A‑AAA‑A‑AAAAAAAAAAATT‑‑TAATTTG‑CATAATAAAAAAAATTTTTTTTAAATAAATTATAAATAATT‑AAATTTAAAAAACAATTATTTATaa                                 >  1:346591/1‑128 (MQ=255)
                                                                                              aatattttGTGTTTGGTTTTTTTT‑TTT‑AA‑TA‑TTTAA‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTtata                                  <  2:3078838/122‑1 (MQ=255)
                                                                                              aaTACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TA‑‑G‑‑‑AA‑A‑AAATA‑AAAAAAAATAAAA‑‑TAATTTG‑AATACTATAAAAAATTGATTTTAAAATAATTATTCACTAGTAAAATTTaaaaaaaatgatttaata                                  >  1:181052/1‑116 (MQ=255)
                                                                                               ttaaaTTGTTTTTGTTTTTTTTT‑TTT‑AT‑TA‑TTTAA‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGATTTATaa                                 <  2:582256/124‑1 (MQ=255)
                                                                                               atattttgttttttgttttTTTATTTT‑AT‑TT‑TT‑‑AAA‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTtata                                  <  2:2207075/123‑1 (MQ=255)
                                                                                                taaattttttttGGTTTTTTTA‑TTT‑AA‑AT‑TT‑‑T‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTTATAAATc                              <  1:17663/119‑1 (MQ=255)
                                                                                                tACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GAA‑AA‑A‑AAA‑A‑AAAAAAAAAAAAA‑‑TAATTTG‑AATAATATAAAAAAATTTTTTTCAAATAAGTATAAGGGAGT‑AATTTAAAAAAACCAAGAGTtaataa                                >  1:2093160/1‑124 (MQ=255)
                                                                                                  tatttgttttGGTTTTTTTT‑TTT‑AC‑AATTT‑‑A‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTTATAAATCt                             <  2:2648673/121‑1 (MQ=255)
                                                                                                   aTTTTGTTTGGTTTTTTTA‑TTT‑AA‑AATTT‑‑A‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGATTTATAACTCtt                            <  2:3625368/128‑1 (MQ=255)
                                                                                                   aTTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GAA‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TATTTTA‑CATAATATAAAAAATTGTTTTTAAAAAAAGTATTCCGGAGT‑AAATTTAAAAAAAATAGAGTTatatatat                             >  1:2007887/1‑126 (MQ=255)
                                                                                                    tttttttttttttttttt‑ttt‑tt‑tt‑tt‑‑t‑‑‑TA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTTATAAATCTTgg                          <  2:2333200/118‑1 (MQ=255)
                                                                                                    ttGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑AAATTTG‑AATACTATAAAAAATTTTTTTTAAAAAAACTATTCAGTAGT‑AAATTTAAAAAACCAATAATTATAAATATTg                           >  2:3011376/1‑128 (MQ=255)
                                                                                                    atgtaTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAAAA‑‑TAATTTG‑CATACAAAAAAAAATTGTTTTTCAAATAAGTATTAAGTAGT‑AAATTAAAAAAACAAAAAGTTAAAAAACTTg                           >  2:2726979/2‑128 (MQ=255)
                                                                                                     tgtgTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑AAATATT‑AATAAAATAAAAAATTTTTTTTAAAATAATTATTATTAATT‑AAATTAAAAAAAACAATATTTAaaaaaattgt                          >  2:243401/1‑122 (MQ=255)
                                                                                                     tgtgTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAAAAATA‑‑TAATTTG‑CATAATTTAAAAAATTGTTTTTAAAATAATTATTCAGTATA‑AAATTTAAAAAACAAATAGTTATAAATATTgt                          >  1:1154614/1‑127 (MQ=255)
                                                                                                     tgtaTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAAAAATA‑‑TAATTTG‑AATAATATAAAAAATTTTTTTAAAAATAATAATTAATTAAT‑AAATTTAAAAAACAAAGAATTATAATTATTgg                          >  1:1630439/1‑128 (MQ=255)
                                                                                                      gtatttGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATAATAAAAAAAATTTTTTTTAAAATAAGTATTAAGGATT‑AAATTTAAAAAACCAAAATTTATAAATCTTGGt                         >  2:929833/4‑128 (MQ=255)
                                                                                                       tatttGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAAAA‑‑AAAATTG‑CATACAATAAAAAATGTTTTTTCAAATAAGTATTCCGGAGT‑AAATTTAAAAAACCAAGCGTGATAAAACATGGtag                       >  2:2276967/3‑126 (MQ=255)
                                                                                                         tttGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GAA‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑AATAATATAAAAAATTGTTTTTCAAAAAATTATTATTTTGT‑AAATTTAAAAAACAAATATTTATAAATAttttttt                       >  2:3560083/1‑123 (MQ=255)
                                                                                                         tttGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAAAA‑‑TAATATA‑CAAAAAATAAAAATTATTTTTTAAAATAATAAATCATAAGA‑AAATTTAAAAAAAAAATATTTATAAAAATTTGtttt                      >  1:272732/1‑128 (MQ=255)
                                                                                                          ttGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GAA‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTT‑CAAAATATAAAAAATTGTTTTTCAAATAATTTTTAATTATT‑AAATTTAAAACACAAAAATATATATATcatagatat                      >  2:2000758/1‑120 (MQ=255)
                                                                                                          ttGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TATTTTG‑AATAATATAAAAAATTTTTTTTAAAATATTTATAAATGATT‑AAATTTAAAAAACAATAAGTTATAAATATTGtttttt                     >  1:597545/1‑128 (MQ=255)
                                                                                                           tGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑GAA‑AA‑A‑AAA‑A‑AAAAAAAAAAATA‑‑TAATTTA‑AAAAAAAAAAAAAATTTTTTTAAAAATAATTATAAAGTATA‑AAATTAAAAAAACAAAAATTTAAAAATTTTGtttttt                     >  2:1211422/1‑128 (MQ=255)
                                                                                                              tttttttA‑TTT‑AC‑TA‑TT‑‑G‑‑‑AA‑A‑AAA‑A‑AAAAAAAA‑AAAA‑‑AAATTTG‑CATAATATAAAAAATTTTTTTTAAAATAATTTTTAATGTTT‑TAATTTTAAAAACCAACATTTAAAAATAATGTTTTTTTTTTta               >  1:3697264/1‑128 (MQ=255)
                                                                                                               ttttttA‑TTT‑TA‑TA‑TT‑‑T‑‑‑AA‑A‑AAA‑ATAAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGttt                <  2:3524014/128‑1 (MQ=255)
                                                                                                               ttttttA‑TTT‑AA‑TATTT‑‑A‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGttt                <  1:3063488/128‑1 (MQ=255)
                                                                                                                tttttA‑TTTAAT‑TA‑TT‑‑AA‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGttt                <  2:1056549/128‑1 (MQ=255)
                                                                                                                 ttttA‑TTT‑AC‑TA‑TT‑‑GA‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTT‑AATAATATAAAAAATTTTTTTTAAAATAAATATTAATTATT‑AAATTTAAAAAACAAAGATTTATAAATATTGTTTTTTTGTTtat              >  1:2272361/1‑128 (MQ=255)
                                                                                                                 ttttA‑TTT‑AC‑TA‑TT‑‑‑‑‑‑‑T‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTT‑CAAAATATAAAAAATTTTTTTTAAAATAATTATTAAGGATT‑AAATTTAAAAAACCAAGAGTTATAAATATTTGTTTTTTTTTTAtatt           >  2:1148665/1‑128 (MQ=255)
                                                                                                                    ta‑ttt‑aC‑TA‑TT‑‑G‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑AAATTTG‑CATAATATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAACATTTATAAAACTTGTTTTTTTGTTTAtatta          >  2:2591317/1‑128 (MQ=255)
                                                                                                                     a‑ttt‑aC‑TA‑TT‑‑G‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATAATATAAAAAATTGTTTTTCAAATAATTATTCAGGATT‑AAATTTAAAAAACAAAGATTTATAAATATTGTTTTTTTGTTTAtattat         >  1:739494/1‑128 (MQ=255)
                                                                                                                           aC‑TA‑TT‑‑G‑‑‑‑A‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑AATACTATAAAAAATTGTTTTTCAAATAATTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTAttt    >  1:3910813/1‑128 (MQ=255)
                                                                                                                              tA‑TT‑‑T‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTg   <  1:2211579/128‑1 (MQ=255)
                                                                                                                               a‑TT‑‑G‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGt  <  1:1215369/128‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                      
CTTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTGTGTTTGGTTTTTTTA‑TTT‑AC‑TA‑TT‑‑G‑‑‑AA‑A‑AAA‑A‑AAAAAAAATAATA‑‑TAATTTG‑CATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGT‑AAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGT  >  CP016816/34818‑35069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑