Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681676,8930T.59.6% inf / inf 1361intergenic (‑142/+43)JCVSYN2_00300/JCVSYN2_00305UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (258/196);  new base . (396/275);  total (659/702)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.44e-01

Only 100 of 1624 total aligned reads displayed.

AATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACTTTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTTT  >  CP016816/76766‑77020
                                                                                                                                |                                                                                                                                
 aTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACtt                                                                                                                                 >  1:770636/1‑128 (MQ=255)
     atatatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACtttttt                                                                                                                             >  1:1004602/1‑128 (MQ=255)
      tatatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACttttttt                                                                                                                            >  2:1563453/1‑128 (MQ=255)
        tatatTAGTTAAATTTATGATTTTATATAAAAATTAATAATAAATGTACAACCCAAATTACACTTTAAATTAAAAAAAAATTATATAAAGATAAATTTTTTAAA‑TAAAAATATTAAAACttttttttt                                                                                                                          <  2:2939583/128‑1 (MQ=255)
        tatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATCCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACttttttttt                                                                                                                          >  2:2620702/1‑128 (MQ=255)
         atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACtttttttttt                                                                                                                         >  2:1342233/1‑128 (MQ=255)
         atatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACtttttttttt                                                                                                                         >  2:525437/1‑128 (MQ=255)
          tatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACttttttttttt                                                                                                                        >  1:62273/1‑128 (MQ=255)
          tatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACttttttttttt                                                                                                                        >  1:3228581/1‑128 (MQ=255)
           atTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCAAAATTCCACTTTAAATTCAAATAACATTATATAAATATAAAATTTTTAAA‑TAAAAATATTACAACtttttttttttt                                                                                                                       >  1:70204/1‑128 (MQ=255)
            ttaatgtaattAAGGTTGTATAATTCAAATTAATAAAAAATGTTCAACCCAAATTCCCCTTTAAATTAAAAAAACATTATTAAAATATAAATTTTTTAAA‑TAAAAATATTACAAAttttttttttttt                                                                                                                      <  2:1153749/119‑1 (MQ=255)
             tAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACtttttttttttttt                                                                                                                     >  2:1290577/1‑128 (MQ=255)
                 gAAATTAATGATTTATAATAAAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACtttttttttttttttgga                                                                                                                 <  2:1000289/128‑4 (MQ=255)
                     ttAACGATGAATAATAAAAATAAATAATAAATTTAAAAACCAAATTACCCTTTAAAATAAAATAAAATTATATAAATAAAAATTTTTTAAA‑TAAAAATATTAAAAATTTTTTTTTTTTTTT‑TGGAACt                                                                                                            <  1:2156051/128‑1 (MQ=255)
                      taactaTGTATAATACAAATAAAAAAAAACTTTCAAACCCAAATTACCCTTTAAAATAAAATAACATTATATAAATATAAATTTTTTAAA‑TAAAAATATTACAACTTTTTTTTTTTTTTT‑TGGAACTa                                                                                                           <  2:3199415/123‑1 (MQ=255)
                      tAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAAAATTATATAAAGATAAATTTTTTAAA‑TAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAACTaa                                                                                                          <  1:155107/128‑1 (MQ=255)
                       aatgATTTATAATAAAAATTAATAAAAACTGTACAAACCAAATTACCCTTTAAAATTAAAAAACATTATATAAATATAAATTTTTTAAA‑TAAAAATATTACAAATTTTTTTTTTTTTTT‑TGGAACTaa                                                                                                          <  2:927831/125‑1 (MQ=255)
                       aaGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAAATaaa                                                                                                         >  2:4020334/1‑127 (MQ=255)
                        aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACTTTTTTTTTTTTTTT‑T‑GAACTaaaa                                                                                                        >  1:863210/1‑126 (MQ=255)
                         ggATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATATAGATAAATTTTTTAAA‑GAAAAATATTACAACtttttttttttttttgtaaataacaa                                                                                                         >  1:3141915/1‑117 (MQ=255)
                            tGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGATATAAAAtata                                                                                                    >  2:770812/1‑128 (MQ=255)
                              tattatATAAAATAAAAATAACTTTACAACCCAAATTCCACATTAAATTCAAATAACATTAAATAAATATAAAATTTTTAAA‑GAAAAAAAATACAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATATAAt                                                                                                  <  1:2878960/128‑1 (MQ=255)
                              tataATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACTTTTTTTTTTTTTTT‑‑‑GAACTAACATATAAtt                                                                                                 >  2:3955867/1‑128 (MQ=255)
                              tataATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTAAAA‑GAAAAATATTACAACTTTTTTTTTTTTTTT‑TGGAAAtaaaataaaa                                                                                                   >  2:165196/1‑128 (MQ=255)
                               ataataCAAATTAATAATAACTTTACAACCCAAATTACCCTTTAAATTCAAATAAAATTATATAAATATAAATTTTTTAAA‑CAAAAAAATTACAAC‑‑TTTTTTTTTTTTT‑TGGAACTAACATATAAttt                                                                                                <  1:51218/128‑1 (MQ=255)
                                taataCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATATAAttt                                                                                                >  1:3839954/1‑128 (MQ=255)
                                    aCAAATTAATAATAAATGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACTTTTTTTTTTTTATT‑TGAAACAAACATTTAATTTTaa                                                                                             >  1:1285452/1‑127 (MQ=255)
                                     cAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGTAACTAAAATATAATTTTaaaa                                                                                           >  2:3264615/1‑125 (MQ=255)
                                       aaTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAatt                                                                                        >  1:2314424/1‑128 (MQ=255)
                                       aaTTAATAAAAAAATTATAAACAAAATTACACTTTAAATTAAAATAAAAATATATAAATAAAAATTTTTTTAA‑TAAAAATATTAAAAATTTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCaa                                                                                          <  2:3528026/128‑1 (MQ=255)
                                          taataataaATTTAAAACCCAAAATACCCTTTAAATTCAAAAAACATTATATAAATTTAAATTTTTTAAA‑GAAAAATATTACAAC‑‑ATTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAattatt                                                                                     <  1:274686/128‑1 (MQ=255)
                                          taataataaATTTAAAAAACAAATTAACATTTAAATTAAAAAAAAATTATATAAATATAAATTTTTTTAA‑TAAAAAAATT‑TAAAATTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAattat                                                                                      <  2:617236/128‑1 (MQ=255)
                                            ataataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAAttatta                                                                                    >  1:1078272/1‑128 (MQ=255)
                                            aaaataaCTGTTCAACACAAATTACCCTTTAAATTAAAATAAAATTATATAAAGTTAAATTTTTTAAA‑TAAAAATATTA‑AAAATTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAAttatta                                                                                    <  1:3721319/126‑1 (MQ=255)
                                             taataaATGTAAAAACCAAAATCACCTTTAAAATATAATAAAATTTTATAAAGATAAATTTTTTAAA‑TAAAAATATTAAAACTTTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAAttatta                                                                                    <  1:3337065/128‑1 (MQ=255)
                                             taataaATGTAAAAACAAAATTTCTTTTTAAATTAAATTAATATTTAATTAATTTATTTTTTTTAAA‑GAATAATATTACAAC‑‑TTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGa                                                                                  <  2:3392029/128‑1 (MQ=255)
                                              tataaATGTAAAAACCAAATTACACTTTAAATTAAAATAAAATTATATAAAGATAAATTTTTTAAA‑TAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGa                                                                                  <  1:24568/127‑1 (MQ=255)
                                              aataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GGAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGTAAATAAAATAAAATTTTACCAAtttttata                                                                                  >  2:2771926/1‑126 (MQ=255)
                                                taaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAACt                                                                                                            <  1:3623317/100‑1 (MQ=255)
                                                taaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTT‑TGTAAAAAAAATATAATTTTAACAATTATTATaatt                                                                               >  1:1618415/1‑128 (MQ=255)
                                                 aaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACTTTTTTTTTTTTTTT‑TGGAACTAAAAAAAAATTTTACCAATTAATAAaat                                                                                >  2:847998/1‑128 (MQ=255)
                                                  aCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTT‑TGTAACTAAAATATAATTTTACAAATTATTATaattaa                                                                             >  2:1725708/1‑126 (MQ=255)
                                                    tGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAAATAAAATATATTTTTACCAATTTTTTGaattata                                                                            >  2:284671/1‑125 (MQ=255)
                                                     gTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACTACTTTTTTTTTTTTTTT‑T‑GAACTAACATATAATTTTACCAATTATTATaatttaaa                                                                           >  2:2168694/1‑128 (MQ=255)
                                                     gTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACTTTTTTTTTTTTTTT‑T‑GAACTAACATATAATTTTACCAATTATTATaatttcaa                                                                           >  1:1466277/1‑128 (MQ=255)
                                                      taaaaacaaaaTTACCCTTTAAATTTAAAAAACATTATTTAAATATAAATTTTTTAAA‑GAAAAATTTTACAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGaatttcaat                                                                          <  2:2423905/120‑1 (MQ=255)
                                                      taaaaaacAAATTACCCTTTAAAATAAAATAACATTATATAAATATAAAATTTTTAAA‑TAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGaatttcaat                                                                          <  1:1872841/121‑1 (MQ=255)
                                                            acAAATTCCCTTTTAAATTAAAATAAAATTTTATAAAGTTAAATTTTTTAAA‑TAAATTTATTACAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTcaca                                                                    <  2:3754088/127‑1 (MQ=255)
                                                             cAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑‑TTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAAttatta                                                                                    >  1:3074175/1‑109 (MQ=255)
                                                              caaatCCCCTTTAAATACAAAATACATTAAATAAACATAAATTTTTTAAA‑TAAAAAAATAACAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                                  <  2:359862/124‑1 (MQ=255)
                                                              aaaatacccATTAAAATCAAAAAAAATTAAAAAAATAATAATTTTTTAAA‑TAAAAATATT‑TAAAATTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                                  <  2:677955/122‑1 (MQ=255)
                                                               aattaaccTTTAAATTCAAATAAAATTATATAAATATAAATTTTTTAAA‑TAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                                 <  1:925219/122‑1 (MQ=255)
                                                               aattaaccTTTAAATTAAAATAACATTATATAAATATAAATTTTTTAAA‑TAAAAATATTACAAC‑‑‑TTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGa                                                               <  1:2938396/122‑1 (MQ=255)
                                                               aaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACTTTTTTTTTTTTTTT‑T‑GAAATAAAATAAAATTTTAAAAAATATTAGAATTTAAATTTAACAGAt                                                                 >  1:1923887/1‑128 (MQ=255)
                                                               aaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACTTTTTTTTTTTTTTT‑‑‑GAACTAACATATAATTTTACCAATTATTATAATTTCAATTTCACAGATg                                                                >  2:2240186/1‑128 (MQ=255)
                                                               aaTTACCATTTTAATTTAAAATACATTATATAAATTTAAATTTTTTAAA‑TAAAAATATTA‑AAAATTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                                 <  2:1837299/128‑1 (MQ=255)
                                                                aatacacTTTAAAATTAAATAATAATTTATAAATATTAATTTTTTTAA‑TAAAAATATTATCA‑ATTTTTTTTTTTTTT‑TGTAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGTTg                                                                <  1:3553310/122‑1 (MQ=255)
                                                                aataacaattAAAATAAAATAAAATTATAAAAATTTAAATTTTTTAAATAAAAAATTTAAAAATTTTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                                  <  2:3096866/120‑1 (MQ=255)
                                                                 ttCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATAAAAATTTACCAATAATTAAaatttcaattaaaaatatca                                                               >  2:2336187/1‑118 (MQ=255)
                                                                       tttaaatttaaaAAAAATTTTTTAAATATAAATTTTTTTAA‑‑TAAAATTTTTTAA‑TATTTTTTTTTTTTT‑TGGAACTAACATATAATTTTAACAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                                        <  2:3874732/128‑1 (MQ=255)
                                                                       tttAAATTCGAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACTTTTTTTTTTTTTTT‑TGGAAATAACATATAATTTTACCAATTATTAGAATTTAAATTTAACAGATGAAttta                                                          >  2:3328751/1‑126 (MQ=255)
                                                                       tttAAATTCAAATAACATTATATAAATATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑‑‑TTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                                      <  1:2649849/128‑1 (MQ=255)
                                                                        ttaaatttaaatAATATTATATAAATATAAATTTTTTAAA‑TAAAAATATTA‑AAAATTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                                        <  1:2379843/128‑1 (MQ=255)
                                                                          aaaTTATAATTAAATTTTATAAATATATATTTTTTAAA‑TAAAAAAATTA‑AAAATTTTTTTTTTTTTT‑TGTAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttc                                                      <  1:1761797/128‑1 (MQ=255)
                                                                           aaTTCAAATAACATTTTATAAATATTAATTTTTTTAA‑TAAAAATATTA‑AAAAATTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttct                                                     <  1:2283552/128‑1 (MQ=255)
                                                                            aTTAAAATAAAATTATTTTAATATAAATTTTTTTAA‑TTAAAATATTTAAAATTTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttct                                                     <  2:1890497/128‑1 (MQ=255)
                                                                             ttaaaaTAAAATTATATAAATTTAAATTTTTTAAA‑TAAAAATATTAAAA‑‑ATTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTtcttct                                                  <  2:2675791/125‑1 (MQ=255)
                                                                              taaaaTAAAATTATATAAATATAAATTTTTTAAA‑TAAAAATATTA‑AAAATTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTtcttct                                                  <  2:1781027/126‑1 (MQ=255)
                                                                              tCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACTTTTTTTTTTTTTTT‑TTGAAATAAAATATAATTTTACAAATTAATATAATTTAAATTTCACAAATTAATTtatttatta                                                   >  2:1426742/1‑127 (MQ=255)
                                                                              tCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACTTTTTATTTTATTTT‑T‑TAAATAACATATAATTTTACCAATAATTTGAATTTCAATTAGACAATTGAATTTATttcttta                                                  >  1:2547404/1‑126 (MQ=255)
                                                                               cAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTT‑TGGAAATAACATATAATTTTACAAATTATTAGAATTTCAATTTAACTAATAAATTAAtttaatataa                                                >  1:447719/1‑121 (MQ=255)
                                                                               aaaaTAAAATTATATAAATTTAAAATTTTTTAA‑TAAAAATATTAAAAC‑‑TTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaa                                                <  1:2235045/127‑1 (MQ=255)
                                                                                  ataaatatatataATTAAAATTTTTTAAAA‑AAAAAATTTAAAAAATTTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCtaat                                               <  1:4021464/121‑1 (MQ=255)
                                                                                     aaaatatataAATATAATTTTTTTAAA‑TAAAAATAATACAAATTTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTaataat                                            <  2:3810903/124‑1 (MQ=255)
                                                                                       aTTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATAAAATTTTACCAATTATTATAATTTAAATTTAACATATTAATTTATTTATTCTAATAAtttt                                         >  1:3934364/1‑127 (MQ=255)
                                                                                        ttATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAACAAACATAAAATTTTAACAATTATTAGAATTAAAATTTCACAAATTAATTAATTTATTATAATAAtttta                                        >  2:2297280/1‑126 (MQ=255)
                                                                                         tatataAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAAATAACATATAATTTTACCAATTATTATAATTTAAATTTAACAGATTAATTTATTTATTATAATAAttttta                                       >  1:2988290/1‑125 (MQ=255)
                                                                                          atatatatATAAATTTTTTAAA‑GAAAAATATTTAAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCt                                      <  1:1243970/128‑1 (MQ=255)
                                                                                          atataAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAAGTAACATATAATTTTACAAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTATAATATTTTGTCt                                      >  2:2086151/1‑128 (MQ=255)
                                                                                          atataAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAACAAACATATAATATTACCAATAAAAATAATTTCATATTCACAGAAGAATTGCTTAAGTATAATAAATTGTca                                      >  2:1048625/1‑127 (MQ=255)
                                                                                            ataAATTTAAATTTTTTAAA‑TAAAAATATTA‑AAAATTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtat                                    <  2:252117/128‑1 (MQ=255)
                                                                                            ataAAGATAAATTTTTTAAA‑GAAAAATATTACAAC‑‑TTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtata                                   <  2:452577/128‑1 (MQ=255)
                                                                                               aatttAAATTTTTTTAA‑TAAAAATATTAAAAATTTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCtatat                                  <  2:1481740/124‑1 (MQ=255)
                                                                                               aaGATAAATTTTTTAAA‑GAAAAATATTACAACTTTTTTTTTTTTTTT‑TGAAAATAAAATAAAATTTTACAAATTAAAAGAATTTCAATTTCACATATAAATTGATTTATTCTAATAATTTTTCtatat                                  >  1:2079128/1‑128 (MQ=255)
                                                                                                atttAAATTTTTTAAA‑TAAAAATATTAAAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGTATTGATTTCTTCTAATAATTTGTCTATATAg                                <  2:1233706/125‑1 (MQ=255)
                                                                                                  aTAAATTTTTTAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAAATAAAATATAATTATACAAATTATTAGAATTTAAATTACAAATATAAATATATTTAATATAATAATTTTTATatatatat                              >  1:3395303/1‑128 (MQ=255)
                                                                                                         ttttAAA‑TAAAAATATT‑TAAAATTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttttt                       <  1:1164203/128‑1 (MQ=255)
                                                                                                         ttttAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTAAATTTCACAGATGAATTTATTTATTCTAATAATTTGTCTATATAGATGtttttt                       >  1:2811808/1‑128 (MQ=255)
                                                                                                          tttAAA‑GAAAAATATTACAACTTTTTTTTTTTTTTT‑‑‑GAAATAAAATATAATTTTACAAATTATTAGAATTTAAATTTCACAGATGAATTTATTTCTTATAATAATTTGTATATATATATGTTTTTtat                     >  1:180933/1‑128 (MQ=255)
                                                                                                            tAAA‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAACTAAAATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATAAATTGATTTATTCTAATAATTTTTGTATATATATTTTTTTtata                    >  2:3455825/1‑128 (MQ=255)
                                                                                                             aaa‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAACTAAAATAAAATTTTACCAATTATAATAATTAAAATTTAACATATGATTTTATTTATTCTAAAAATTTTAAAAAATAAATGTTTTTtataa                   >  2:3025165/1‑127 (MQ=255)
                                                                                                              aa‑GAAAAATATTACAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATc                  <  1:1689952/128‑1 (MQ=255)
                                                                                                               a‑GAAAAATATTACAAC‑‑‑TTTTTTTTTTTT‑TGGAACTAACATAAAATTTTACCAATTATTATAATTTCAATTTCACAGATGAATTCATTAATTATAATAATTTTTATATATATATTTTTTTTAAATCTaa               >  2:2010300/1‑128 (MQ=255)
                                                                                                                  aaaaaTATTACAAC‑TTTTTTTTTTTTTT‑TGTAACTAAAATTAAATTTTAACAATTTTTATATTTTAATTTTAAAAAATTAATTTATTTATAGAAATATTTTATATTTATATAAGTTATTTaaataaat               >  1:3484721/1‑124 (MQ=255)
                                                                                                                   taaaaATTAAAAAATTTTTTTTTTTTTT‑TTGAACTATCTAATATTTTTACCAATTATTAGAATTGCAATTTAACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTaa               <  2:3687827/127‑1 (MQ=255)
                                                                                                                       tatTACAAC‑TTTTTTTTTTTTTT‑TGGACCAAAAATATAATTTTACAAATTATTAAAATTTCAATTTCACAGATTATTTGTTTTCTTATAATATTTTTTATATATTTATGTTTTTTATaaataaataat          >  1:3269577/1‑125 (MQ=255)
                                                                                                                       tatTACAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAg          <  1:1348538/128‑1 (MQ=255)
                                                                                                                       aatTAAAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAg          <  1:3772574/127‑1 (MQ=255)
                                                                                                                          tACAAC‑TTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTAAATTTAAAATATTAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATATAAATCattta       >  1:1998348/1‑124 (MQ=255)
                                                                                                                          tACAAATTTTTTTTTTTTTTTATGGAAATAAAATATAATTTTACAAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGt         <  2:195262/128‑1 (MQ=255)
                                                                                                                                |                                                                                                                                
AATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAA‑GAAAAATATTACAACTTTTTTTTTTTTTTT‑TGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAAATCAGTGATCTTT  >  CP016816/76766‑77020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑