Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816165,2500T.67.8% 1454.3 / inf 1126intergenic (+214/‑328)JCVSYN2_00665/JCVSYN2_00670tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser
Reads supporting (aligned to +/- strand):  ref base T (142/218);  new base . (539/219);  total (683/443)
Fisher's exact test for biased strand distribution p-value = 9.83e-24
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1367 total aligned reads displayed.

ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAAC  >  CP016816/165123‑165377
                                                                                                                                   |                                                                                                                                 
 taataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtt                                                                                                                                  >  2:2295147/1‑128 (MQ=255)
 taataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtt                                                                                                                                  >  2:1527808/1‑128 (MQ=255)
   atattttcgtttaTTAATTTATCGCCCTTTTATGAATTAGTTATAAAATAAAAATATTATATTTTTATATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTTAACTTGTAAAAAAAAGCtttt                                                                                                                                <  2:3400990/116‑1 (MQ=255)
   atatTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCtttt                                                                                                                                >  1:2176066/1‑128 (MQ=255)
     atTTAGTTTTAATAATTATTTTCTATTTTATTAATTATTAACTAAATAAAATTATTATATTTATATTTTTTTTTTTTTTTTTCAAATTTTTAAAAAAATAATTTTAACTTTTAAAAAATAGCtttttt                                                                                                                              <  2:459356/128‑1 (MQ=255)
          gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttt                                                                                                                         >  1:1216960/1‑128 (MQ=255)
          gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttt                                                                                                                         >  2:286094/1‑128 (MQ=255)
          gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAAATTGAACTTGTAAAAAATAGCatttttttttt                                                                                                                         >  1:886030/1‑128 (MQ=255)
            ttCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATATCttttttttttttt                                                                                                                       >  2:1186809/1‑128 (MQ=255)
               aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTTTAAAAAATAGCttttttattttttttt                                                                                                                    >  1:1826004/1‑128 (MQ=255)
               aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGAtttttttttttttttt                                                                                                                    >  2:854600/1‑128 (MQ=255)
               aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATATTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGAttattttttttttttt                                                                                                                    >  1:2640687/1‑128 (MQ=255)
                 tAATTTATCGCACTTGTATGAATTATTAATAAAATAAAAATATTATATTTTTATATATTTTTTTTATATTCAAATTTTTAAAAAATTAATTTTAAATTGTAAAAAATATCttttttttttttttttat                                                                                                                  <  2:161590/128‑3 (MQ=255)
                   aTTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttttttttataa                                                                                                                >  2:597346/1‑124 (MQ=255)
                    tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttatttataaatg                                                                                                               >  1:942054/1‑121 (MQ=255)
                    tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTtataa                                                                                                               >  1:1889743/1‑127 (MQ=255)
                       atagCACTTTAATTAATTATTAAGAAACAAAAACTATTTTCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATATCTTTTTTTTTTTTTTTTtataatgg                                                                                                            <  1:1991286/125‑5 (MQ=255)
                       aTCGCACTTGTTTGAATTAGTAAGAAACTAAAACTATTATCTTTTTATATATTTTTTGTAAATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCttttttttttttttttataatgga                                                                                                            <  1:3604949/128‑9 (MQ=255)
                       aTCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTtataaatg                                                                                                            >  1:468427/1‑124 (MQ=255)
                        tcgaaattGTTTTAATTAGTAATAAAATAAAAATATTTTATTTTAAGATATTTATTTTATATCCAAAATTTTAAAAAATTAAATTGAAATTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATAATgg                                                                                                          <  2:2783248/122‑1 (MQ=255)
                        tCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTATTTTTTTTTTTTTTtataattta                                                                                                           >  2:3784514/1‑123 (MQ=255)
                          gcaattgtttttattattAATAAAATAAAAATATTATTTTTTTTTTTATTTTTTGTTTTTTTAAATTTTTTAAAAATTTATTTTTAATTTTAAAAAAT‑‑TTCTTTTTTTTTTTTTTTTTATAATGGaaa                                                                                                       <  2:2383633/116‑1 (MQ=255)
                             cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTtaatttaaatat                                                                                                      >  2:3721785/1‑118 (MQ=255)
                             cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTTaaattaaaa                                                                                                      >  2:3239837/1‑121 (MQ=255)
                              ttGTATGAATTAGTAGGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATGTAAAtata                                                                                                   >  1:3722412/1‑128 (MQ=255)
                                 tattaattattaatAAAATAAAAATATTATTTTTTTTTATATTTTTTGTTTATTGAAAATTTTAAAAAATTAATTTTAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  1:3102406/128‑1 (MQ=255)
                                 tATTAATTAGTAAGAAAATTAAAATATTATCTTTTTATATTTTTTTTTTATATGCAAATTTTTAAAAAATTAATTTGAAATTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAAtt                                                                                               <  1:2958500/128‑1 (MQ=255)
                                 tATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATATTGTAAATATAAAt                                                                                                >  2:1012859/1‑128 (MQ=255)
                                        tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATTAAAATAAAAATTTTAgta                                                                                         >  1:3155713/1‑126 (MQ=255)
                                         aGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTAATTTAAATATAAATTTTAgtt                                                                                         >  2:3880345/1‑126 (MQ=255)
                                         aGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTCAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAATTATAAATTTTAGGAAt                                                                                       >  2:4029396/1‑128 (MQ=255)
                                               taaataaaaataTTATATTTTTATTTATTTTTTGTATATTCAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑TGTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTttgt                                                                                  <  2:1469391/124‑1 (MQ=255)
                                               aaaataaaaattTTTTATTTTTTTATTTTTTTTTTTTATTTAAATTTTTAAAAAATTTATTTTAAATTTTATAAAATTTATTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTttg                                                                                   <  1:654049/128‑1 (MQ=255)
                                                taataaaaataTTATTTTTTTTTTATTTTTTTTTATATTTAAATTTTTAAAAAAATAAATTTTAATTTTATAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTttgtt                                                                                 <  1:693005/125‑1 (MQ=255)
                                                aactaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTATTTTTTTTTTTAAAATTTAAATATAAATTTTAGttttttttttt                                                                                >  2:2123505/1‑127 (MQ=255)
                                                 actaaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGATTTTTTTTTTTTTTTTTAATAATTTATAAATAATTTTTAGTTATTttgtt                                                                                 >  1:142961/1‑128 (MQ=255)
                                                   taaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTATAAATTAAATATAAATTTTAGTTATTttgtttta                                                                              >  2:131718/1‑125 (MQ=255)
                                                   taaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATGTAAtttttttta                                                                              >  2:2717354/1‑125 (MQ=255)
                                                    taaaataTTAATTTTTTACTTTTTTTTTGTTTATTCAATATTTTAAAAAAAAAAATTCAAATTTTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTa                                                                            <  1:1145545/127‑1 (MQ=255)
                                                    aaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAAAAAAAATTTAAGTATtttttttttat                                                                            >  1:3797339/1‑123 (MQ=255)
                                                    aaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAAAATGGAAATTTAAATTTTAGTTATTTttttgtat                                                                             >  2:929701/1‑126 (MQ=255)
                                                    aaaactaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAAAGTAAATATAAATTTAATTAATTTTTTTTTCTa                                                                            >  1:411046/1‑128 (MQ=255)
                                                     aaaataTTATATTTTTATTAATTTTTTTTATATCTAAATTTTTAAAAAATTAATTTTAATTTTTAAAAAAAA‑‑‑‑TCATTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAg                                                                          <  2:2052510/128‑1 (MQ=255)
                                                      atttattatTTTTTTTTTTTTTTTTTTTATTTTAAAATTTTTAAAAAATAAATTTTAACTTTTAAAAAATAG‑‑ATTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTaa                                                                           <  1:3670421/125‑1 (MQ=255)
                                                      aaatattatTTTTTTATATATTTTTTTTTTAATTAAATTTTTAAATAATTAATTTTTAATTTTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTa                                                                            <  1:1514400/125‑1 (MQ=255)
                                                       actaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTAAAATATAAATTTTATTTATttttttttaaaat                                                                          >  1:1751412/1‑121 (MQ=255)
                                                       aatattatTTTTTTATTTATTTTTTTTATATTAAAATTTTTAAAAAATTAATTTTAAATTTTAAAAAATA‑‑TGTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAg                                                                          <  1:812554/126‑1 (MQ=255)
                                                        ctaTTATCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAAAATTTAAATATAAATTTAAGTTATTTTTTTTTATAATTa                                                                       >  2:691521/1‑128 (MQ=255)
                                                         tattatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTATTTTGTTTTCTAATTAt                                                                      >  1:1391883/1‑128 (MQ=255)
                                                         tattatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTATTAAAATGGAATTATAAATTTTAGTTATTTTTTTTAATAAGTAt                                                                      >  1:532851/1‑128 (MQ=255)
                                                          attttattttttTATTTTTTTTGTATATTAAAATTTTTTAAAAATTAATTTGAAATTTTAAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTAt                                                                      <  2:2601677/122‑1 (MQ=255)
                                                           ttatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTAGGTATtttttttttaaattatc                                                                      >  2:2500349/1‑117 (MQ=255)
                                                           ttatCTTTTTAGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATTTATTTTTTTGTATAATTAta                                                                     >  1:2796225/1‑127 (MQ=255)
                                                             ttttttttATATTTTTTTTTTATATTCAAAATTTTAAAAAATTAAATTTAAATTTTAAAAAAAATCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCt                                                                    <  1:3385334/125‑1 (MQ=255)
                                                                  tttATATATTTTTTTTATATTAAAATTTTTAAAAAATTAATTTGAAAATTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaa                                                              <  1:3441967/128‑1 (MQ=255)
                                                                   tttgATATTTTTTTTTTATTTAAATTTTTAAAAAATTAATTTTTAATTTTAAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaaa                                                             <  1:1044887/125‑1 (MQ=255)
                                                                    tattttttttttttATTTTTAAATTTTTTAAAAATTTATTTTTAATTTTTAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAAt                                                            <  1:597525/122‑1 (MQ=255)
                                                                    tAGATATATTTTTTATATTTAAATTTTTAAAAAATTAATTTTAAATTGTAAAAAATAG‑‑‑ATTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATa                                                           <  1:270607/128‑1 (MQ=255)
                                                                     atttatTTTTTTTATATTGAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAATA‑‑‑TATTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                          <  2:3332279/125‑1 (MQ=255)
                                                                     agttatTTTTTTTATTTGTAAATTTTTAATAATTTAATTTGAATATGTTAAAAATA‑‑‑TGTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAg                                                          <  1:244935/125‑1 (MQ=255)
                                                                     aGATATTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAG‑‑ATTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAATTATTTTTTTTTATAATTATAAAAAAAAATa                                                           >  1:1584614/1‑128 (MQ=255)
                                                                       atatTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATAAAAATTTTAGTAATTTTTTTTTATAATTATATAAAAAAATaaa                                                         >  2:1956974/1‑126 (MQ=255)
                                                                        gtatttagatataTTCAAATTTTTAAAAAATTAATTTTTAATTTTTAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGaa                                                        <  1:3850715/119‑1 (MQ=255)
                                                                         atTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTATTTTTTTGTAAAATTATAAAAAAAAATATaaa                                                       >  2:776089/1‑128 (MQ=255)
                                                                         atTTTTTGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑‑TTTTTTTTTTTTTTTATATTTTAAATATAAATTTTAGTTATTTTGTTTTATAATTATCTAAAAAAATATaaatg                                                     >  1:3040116/1‑126 (MQ=255)
                                                                           tttttGTTTATTCAAATTTTTAAAAAATTAATTTTAACTTTTAAAAAATAGCTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAg                                                      <  1:2051440/128‑1 (MQ=255)
                                                                           tttttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATTGAAATATAAATTTTATGTATTTTTTTGTATAAGTATATAAAAAAATAaaaatta                                                    >  1:1283845/1‑125 (MQ=255)
                                                                            ttttGTATATTCAAAATTTTAAAAAATTAATTTTAAATTTTAAAAAATAC‑‑GTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaa                                                   <  1:3487612/128‑1 (MQ=255)
                                                                             ttttttttattaaaaTTTTTTAAAAATTAATTTTAAATTTTATAAAATA‑‑TATTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGa                                                    <  1:1009766/116‑1 (MQ=255)
                                                                              ttGTTTATTCAAATTTTTAAAAAATTAATTTTTAATTTTAAAAAAAA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaa                                                  <  1:2298884/128‑1 (MQ=255)
                                                                              ttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTAATTTAAATATAAATTTTATTTATTTTTTTTTATAATTTAAAAAAAAAATAaaaataaa                                                   >  1:2389828/1‑124 (MQ=255)
                                                                              ttGTATATGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTAATGTAAAAATAAATTTTATTTATTTTTTTTTATAATTATATAaaaaaaaaaaaaataa                                                   >  2:1253457/1‑124 (MQ=255)
                                                                               tttataTTCAAATTTTTAAAAAAATAATTTGTAATTGTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaaa                                                <  2:363030/126‑1 (MQ=255)
                                                                               tGTATATTTAATTTTTTAAAAAATTAATTTTAAATTTTATAAAATA‑‑TATTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaa                                                 <  1:3915845/128‑1 (MQ=255)
                                                                                  atatGTAAATTTTTAAAAATTTTATTTTTAATTTTTAAAAAT‑‑TTGTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                             <  1:750438/128‑1 (MQ=255)
                                                                                   attttaaaaTTTTTAAAAAAATAATTTTTAATTTTTAAAAATA‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat                                             <  1:1349855/122‑1 (MQ=255)
                                                                                    atGCAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTATATTTTAAATAAAAATTTTTGTTTTTTTTTTTTATAATTTAATAAAAAAATATAAAGTaaaaatat                                             >  2:3190035/1‑125 (MQ=255)
                                                                                      tgtaaaTTTTTTAAAAATTTATTTGAAATTTTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATAtt                                          <  2:1889743/125‑1 (MQ=255)
                                                                                        cAAATTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATATTGAAAAATTAAATTTTTGTTTTTTTTTTTTTAATTTAATAAAAAAAAAAAAATAAAAAAATTATTGt                                        >  2:3456213/1‑128 (MQ=255)
                                                                                          aaTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTATAAGTATATAAAAAAATAGAAAGTAAAAAATATTTTTaa                                     >  2:107971/1‑128 (MQ=255)
                                                                                            aTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTTATTTTGTTTTATAAGTATAAAAAAAAATATAATATAAAAAATATTGTTaaa                                    >  1:2868594/1‑128 (MQ=255)
                                                                                            aTTTTTAAAAAATTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAttt                                                                                     >  1:3239166/1‑81 (MQ=255)
                                                                                                 ttaaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATTATGGAAATATTAATTTTAGGTATTTTTTTTTATAATTATAAAAAAAAATATAAAAGAAAAAATATTTTTAAAAATa                                >  1:2256513/3‑128 (MQ=255)
                                                                                                  taaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATTGAAAAATAAATTTTATGTATTTTTTTTTAAAATTATAAAAAAAAATAAAAATTAAAAAATATTTTTaaaaaaa                                >  2:2952044/2‑125 (MQ=255)
                                                                                                  taaaaaaTTAATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTTTTGTATAAGTATATAAAAAAATTAAAAGAAAAAAAAATTGTTAAAAGTaa                               >  2:3042208/2‑128 (MQ=255)
                                                                                                     aaaattaattTTTAATTTTAAAAAATA‑‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATa                             <  1:2121555/126‑1 (MQ=255)
                                                                                                     aaaattaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTT‑‑TAATGGAAATATAAATTTTATTAAATTTTTTGAAATATTAAATAAAAAATTAAAAATTAATAAAAATTGTTAAATGTAATa                             >  2:1818324/3‑128 (MQ=255)
                                                                                                     aaaattaattTGAACTTGTAAAAAATAGC‑‑‑‑‑TTTTTTTTTTTTTTATATTTGAAAAATAAATTTTATTTTTTTTTTTTTCTAATTTTATAAAAAATTATAAAATAAAAAATATTTTTAAAATTataaata                          >  1:1652359/3‑122 (MQ=255)
                                                                                                       aattaattTGAACTTGTAAAAAATAGCTCTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTTTCTAAAAAAATATAAAGGAAAAATTATTTTTAAAAGTataac                            >  1:331461/1‑124 (MQ=255)
                                                                                                        attaattTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTAT‑‑TTTAAATAAAATTTTATGATTTTTTTTTTAAAATTAATATAAAAAAATAAAAATTAAAAAATATTTATAAAATAAataata                          >  2:3113987/1‑128 (MQ=255)
                                                                                                        attaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATATTGGAATTATAAATTTTTGTTTTTTTTTTTTATAAGTATATAAAAAAATATAAAGTAAAAAAATTTGTTAAAATTAataata                          >  1:3539336/1‑128 (MQ=255)
                                                                                                         ttaattTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATATTTAAAAATAAATTTTTTGTATTTTTTTGTTAAATTATATAAAAAAATAAAAAATAAAAAAAATTTTTAAATTTAATTATaaa                        >  2:1728481/1‑128 (MQ=255)
                                                                                                         ttaattTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGTAATTTTTTTTTCAAATTATCTAAAAAAATAAAAAGAAAAAAATATTTTTAAAAGTAAAAATaaa                        >  2:1409624/1‑128 (MQ=255)
                                                                                                            attTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTATGTATTTTTTTGTCTAATTATATAAAAAAATATAAATTAAAAAATTTTTTTAAAATTAATAATAAAat                      >  1:3988972/1‑128 (MQ=255)
                                                                                                                tGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTATAAAATGTAAATATAAATTTTAGTTTTTTTTTAGTAAAATTAAAATAAAAATTAGAAATGAAAAAATATTGTTAAAATTATTAATAAAataa                    >  2:2218268/1‑126 (MQ=255)
                                                                                                                tGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTTTTGTGTAATTATATAAAAAAATATAAAGAAAAAAATATTTTTAAAATAAATCATAAAatttt                   >  2:3926296/1‑126 (MQ=255)
                                                                                                                  aaCTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTATTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTAttt                 <  1:3203490/128‑1 (MQ=255)
                                                                                                                  aaCTTGTAAAAAATAG‑‑ATTTTTTTTTTTTTTTTTATAATTGAATTATAATTTTTAGTTTTTTTTTTTTATAATTTTATAAAAAAATTATTATGAAAAAAATTTTTAAAAATTAATAATAAATtttttt                 >  2:3531383/1‑128 (MQ=255)
                                                                                                                   aCTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTAAATTGTAAATAAAAATTTAAGTTATTTTGTTGTCTAATTATAATAAAAAATAAAAAGGAAAAAATTTTGTTAAATTTAATAATAAAATAATTTa                >  1:2570674/1‑128 (MQ=255)
                                                                                                                         ttaaaaattttttttttttttttttttttATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGt            <  2:529146/118‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                 
ATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATATGCAAATTTTAAAAGAATTAATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAAGTAATACTAAAATTATTTAATGTTAATTAAAAC  >  CP016816/165123‑165377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: