BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	202,494	0	A	T	53.0%	5.0 / 216.2	281	intergenic (+272/‑403)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand): ref base A (49/83); new base T (56/93); total (105/176)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.73e-01

Only 100 of 335 total aligned reads displayed.

AAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202368‑202621

   taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑Ataaa‑aatt‑aaaaaa                                                                                                                          >  2:3451362/1‑128 (MQ=255)

    aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTATAT‑TTTTTAATCATCACAAATAAAAAAAAAAAAAACACATTAaaaa‑aaaa‑aaaa                                                                                                                            >  2:930621/1‑128 (MQ=255)

    aataGAGTTAAGGTTAATTAAAATACCATAAACTAAATAATTCATATAATTTAGATCCTCTTGATCTATTTTTTTAT‑TTTTTTATCTTCACAAATAAAAAAAAAACAATCCAC‑‑‑TAAA‑AAAT‑taaaaaa                                                                                                                         >  2:1227820/1‑128 (MQ=255)

     ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑‑TAAA‑AAAT‑aaaaaaaa                                                                                                                        >  1:3557281/1‑128 (MQ=255)

      taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATAT‑TTGTTAATCTTCACAAATAAAAAAAAAACATACCCC‑‑TTAAA‑AATT‑aaaaaaaa                                                                                                                        >  2:2108062/1‑128 (MQ=255)

      taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATATAATAT‑AAAATTAAAATAACAAAAAAAAAAAAAAAAAACAAC‑‑ATAAA‑AAAT‑aaaaaaaa                                                                                                                        >  2:2745358/1‑128 (MQ=255)

       agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaa                                                                                                                       >  2:3382205/1‑128 (MQ=255)

       agacTTAATGTTTATTAAAATAACATAAACTTAAAAATTATTATAAAGTATATCCTCGTTTTATATTTTTTTAT‑TTTTTTATATTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AATT‑aaaaaaaaa                                                                                                                       <  1:2052355/128‑1 (MQ=255)

          gtaaaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAAAAATCCCC‑‑‑TAAA‑AAAT‑aaaaaaaaaaaaa                                                                                                                   >  2:380703/4‑128 (MQ=255)

          gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaa                                                                                                                    >  2:492247/1‑128 (MQ=255)

           ttAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATCTATTTTTTTAT‑TTTTTTATATTAACAAATAAAAAAAAAAAAATAAACTTaaaaa‑aaaa‑aaaaaaaaaaa                                                                                                                     >  1:1292498/1‑128 (MQ=255)

            tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTAT‑TTTTTTATCTTCACAAATAAAAAAAAAAAAAACACCTaaaaaa‑aaaa‑aaaaaaaaaaaa                                                                                                                    >  2:2612683/1‑128 (MQ=255)

            tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaa                                                                                                                  >  2:3253134/1‑128 (MQ=255)

            tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATATTCACAAATAAAAAAAAAACAA‑‑AAAAAATAAA‑AAAT‑aaaaaaaaaaaaaa                                                                                                                  >  2:1396057/1‑128 (MQ=255)

            tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTAT‑TTTTTTATCTTCACAAATAAAAAAAAAA‑AATCCC‑‑AATAAA‑AATT‑aaaaaaaaaaaaaaa                                                                                                                 >  2:3310092/1‑128 (MQ=255)

             aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATAATCGTGATCTATTTATATAT‑TTATTTATATTAACAAATAAAAAAAAAAAAAT‑‑AAAATTAAA‑AATT‑aaaaaaaaaaaaaaa                                                                                                                 >  2:5655/1‑128 (MQ=255)

             aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaa                                                                                                                 >  2:3221976/1‑128 (MQ=255)

             aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCACCTT‑‑‑AA‑AAAT‑aaaaaaaaaaaaaaaa                                                                                                                >  2:3965543/1‑128 (MQ=255)

             aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAAAAAAATCACATTAAA‑AAAT‑aaaaaaaaaaaaa                                                                                                                   >  2:3994001/1‑128 (MQ=255)

             aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAAAAATAAAAAAAAAA‑AATAACC‑‑CTAAA‑AAAT‑taaaaaaaaaaaaaaa                                                                                                                >  2:3625316/1‑128 (MQ=255)

             aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTATTTATCTTCACAAAAAAAAAAAAAAAAAAAAC‑‑‑ATAAA‑AAAT‑aaaaaaaaaaaaaaaa                                                                                                                >  2:2701093/1‑128 (MQ=255)

             aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAA‑TTGTAAATCTTAACAAAAAAAAAAAAAACAAACCAC‑‑TAAAA‑AAAT‑aaaaaaaaaaaaaaa                                                                                                                 >  1:3094170/1‑128 (MQ=255)

             aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTAT‑TATTTTATCTAAAAAAATAAAAAAAAAACAA‑‑‑AAAAATAAA‑AAAT‑aaaaaaaaaaaaaaaa                                                                                                                >  2:2468819/1‑128 (MQ=255)

               ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTTTTTATCTTAACAAATAAAAAAAAAACAATACCATT‑‑‑AA‑AAAT‑aaaaaaaaaaaaaaaaaa                                                                                                              >  1:2551337/1‑128 (MQ=255)

               ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaa                                                                                                               >  2:3140021/1‑128 (MQ=255)

               ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaa                                                                                                               >  2:3707136/1‑128 (MQ=255)

               ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCATCACAAATAAAAAAAAAAAAAACACCTAaaaaa‑aaaa‑aaaaaaaaaaaaaaa                                                                                                                 >  2:2041705/1‑128 (MQ=255)

                gTTAATTAAAATACCATAAACTTAATAATTCTTAAAATGAAGATCCTCGTGAACTAATATATAAA‑TTAATAAACAACACAAATAAAAAAAAAAAAAAAACATT‑‑‑AA‑AAAT‑aaaaaaaaaaaaaaaaaaa                                                                                                             >  1:1920593/1‑128 (MQ=255)

                   aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATAACC‑‑TTAAA‑AAAT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                           >  1:3585145/1‑128 (MQ=255)

                   aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCAAAAATAAAAAAAAAAAAATCAC‑‑ATTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                           >  1:3367581/1‑128 (MQ=255)

                   aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTAT‑TTGTTTAACTTCACAAATAAAAAAAAAACAAACCC‑‑AATAAA‑AAAT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                           >  2:2556456/1‑128 (MQ=255)

                   aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATTTTTTAT‑TTGATTATCTACACAAATAAAAAAAAAAAAATACC‑‑AAAAAA‑AAAT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                           >  1:2033543/1‑128 (MQ=255)

                   aattaaAATACCATAAACTTAATAATTCATATAATGTATATCATCGTAAACTATTTTTTTAT‑TTGATAATCTTCACAAATAAAAAAAAAACAAAAAAC‑‑‑TAAA‑AAAT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                          >  2:1573001/1‑127 (MQ=255)

                    attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCACTTAaaaa‑aaaa‑aaaaaaaaaaaaaaaaaaaa                                                                                                            >  2:3868914/1‑128 (MQ=255)

                    attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                          >  2:1026002/1‑127 (MQ=255)

                    attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑ATAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                          >  1:3455173/1‑127 (MQ=255)

                     ttaaAATAACATAAAATTAATAATTCTAAATATGTATAAACTCTTGATATATTTTTTTAT‑TTTTTTATATTAAAAAATAAAAAAAAAACAAACCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTa                                                                                                        <  1:2316245/128‑1 (MQ=255)

                      taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                        >  2:449207/1‑125 (MQ=255)

                       taaataaaataAAATTAATAATTAATAAAATTAATATCATATTTTTATAATTTTTAAT‑TTTTTTATATTAAAAAATAAAAAAAAAAAAATACCC‑‑ATAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTaa                                                                                                       <  1:1536773/127‑1 (MQ=255)

                       aaaaTACAATAAACTTAATAATTATTATAATGTATATACTCGTGATCTATAATTTTAT‑ATTTTAATCATCACAAATAAAAAAAAAAAAA‑‑AAAAAATAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                       >  1:3069347/1‑124 (MQ=255)

                        aaaTACCATAAACTTAATAATTCTTATAATTTAGATCATCGTGATCAAATATATTAA‑TAATATATCTTCACAAATAAAAAAAAAACAAAACCATTAAAAA‑Taaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                        >  1:1674007/1‑125 (MQ=255)

                        aaaTACCATAAACTTAATAATTCTTATAATGTCGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAAACCCCTTAAAAA‑Taaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                                        >  2:3747175/1‑125 (MQ=255)

                         aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATAACC‑‑TTAAA‑AATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:3146024/1‑128 (MQ=255)

                         aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAAAACAC‑‑TAAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaaaaaac                                                                                                     >  2:3541626/1‑122 (MQ=255)

                          aTACCATAAAATTAAAAATTCTTTTAAATTTCTTCCTCGTTTTCTATTTTTTTAT‑TTTTTTTTATTAAAAAAAAAAAAAAAAAAAATCCCC‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                                     <  2:3055489/128‑1 (MQ=255)

                             ccAAAAACTTTATTATTATAATAAATTATATACTCTTACTCTAATTTTTTTT‑TTTTTTATAAAAAAAAAAAAAAAAAAAACAAT‑CCCATTTAAA‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                                  <  1:2273966/128‑1 (MQ=255)

                              cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaacaaaaaacaaaacat                                                                                                >  2:412016/1‑117 (MQ=255)

                               aTAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAAATAaaaaaaaaa                                                                                               >  1:3465111/1‑127 (MQ=255)

                                 taatatataaatTATTATAATTTATATTCTGTTTATATTTATTTTTTT‑TTTTTTATAATCACAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                           <  2:952887/119‑1 (MQ=255)

                                  aaattAATAAATATTATAAATTATAACATAGTTATCTATTTTTTTAT‑TTTTTTATATTAACAAATAAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                           <  1:3310172/125‑1 (MQ=255)

                                  aaattAAAAATTATTTTAATTTTTAACCTCGTTTTATTTTTTTTTAT‑TTTTTTATTATAAAAAATAAAAAAAAAAAAATCCCC‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                                             <  2:2197073/125‑1 (MQ=255)

                                   acataataaTTCTTATAATTTATATAATTTTTTTTTTTTTTTTTAT‑TTGTTTATATTAAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                          <  2:3182601/125‑1 (MQ=255)

                                   aattAATAAATAATATAATTTATATCCTTGTGATATATTTTTTTAT‑TTTTTTAATTTAAAAAAAAAAAAAAAAACAAACCCCTT‑‑‑AA‑AAAT‑‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                       <  1:3528385/126‑1 (MQ=255)

                                   aattAAAAATTCTTATAATGTATAACCTCTTTATATATTTTTTTAT‑ATTTTTATAAAAACAAAAAAAAAAAAAACAATCCCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                           <  1:360665/126‑1 (MQ=255)

                                          aatTTTTATAATTTTAATACTTGTTATATATTTTTTTTA‑TTTTTTAAATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑ATAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                                   <  1:404717/128‑1 (MQ=255)

                                          aatTATTATAATTTATATACTCTTTTTCTATTTTTTTAT‑TTTTTAATAATCACAAAAAAAAAAAAAACAAACCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                                    <  1:2186035/128‑1 (MQ=255)

                                          aatTATTAAAATTTATATATTCGTTTTATATTTTTTTAT‑TTTTATATCTTAAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                                   <  1:599561/128‑1 (MQ=255)

                                            tctttAAAATTTATATCAACGTTATATAATTTTTTAT‑TTTTTTATATTAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaaa                                                                                 <  1:2683912/125‑1 (MQ=255)

                                             taatataATGTATATACTCGTTATCTATTTTTTTAT‑TTGTTTATATTAAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                                                <  1:2008620/125‑1 (MQ=255)

                                                           taatagttatatatttttttat‑tttttTATATAAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                   <  1:320945/117‑1 (MQ=255)

                                                            gactttgttatttttttttat‑ttttttaAATTTAAAAATAAAAAAAAAAAAATACCC‑‑TAAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                  <  2:2310632/116‑1 (MQ=255)

                                                             atagttattatttttttttt‑tttttTAAATTAAAAAAAAAAAAAAAAAAAATCCCC‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                  <  1:3776981/117‑1 (MQ=255)

                                                               agttttattttttttttt‑tttttAAAATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                              <  2:310200/119‑1 (MQ=255)

                                                                tataaatttttttttat‑ttttttaATTTAAAAAAAAAAAAAAAAAAAATACCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                              <  1:648460/120‑1 (MQ=255)

                                                                attttttATTTTTTTATATTTATTATATAAAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                              <  1:825060/122‑1 (MQ=255)

                                                                 ttttataattttttat‑ttttttatATTAAAAAATAAAAAAAAAACAATACAC‑‑TTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                            <  1:1135331/120‑1 (MQ=255)

                                                                 ttatttttttttttat‑ttttttaTAAT‑AAAAATATAAAAAAAAAAAAATTCATTT‑AA‑AATT‑AAAAAATAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  2:1921120/121‑1 (MQ=255)

                                                                 ttatttatttttttat‑tttttTATAAAAAAAAATAAAAAAAAAAAAAT‑ACAATTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                              <  1:2638218/123‑1 (MQ=255)

                                                                  tattattttttttAT‑TTTTTAATATTAAAAAAAAAAAAAAAAAAAAAACCC‑ATAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  1:2816169/122‑1 (MQ=255)

                                                                  tatatatttttttat‑tttttTATATTAAAAAAAAAAAAAAAAAAAATCCCC‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  1:2499439/124‑1 (MQ=255)

                                                                  tataaatttttttat‑ttttttATAATAAAAAAAAAAAAAAAAAAAAAACCC‑ATAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  1:3926411/123‑1 (MQ=255)

                                                                   taatatttttttat‑tttttAATATAAAAAAAAAAAAAAAAAAAAATCACCTTAAAAATTAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                              <  1:1044233/125‑1 (MQ=255)

                                                                   taatATTTTTTTAT‑TTGATAATCATAACAAAAAAAAAAAAAAAAAAACCCCTTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                             <  1:3656926/125‑1 (MQ=255)

                                                                       ttttttttat‑tttttttatATAAAAAATAAAAAAAAAAAAATCAC‑‑ATTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                       <  1:1586167/127‑1 (MQ=255)

                                                                           ttttAT‑TTTTTTATTAACAAAAATAAAAAAAAAACAATCCC‑‑ATAAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                   <  2:1292498/128‑1 (MQ=255)

                                                                            tttAT‑TTTTTTTTATTAAAAAAAAAAAAAAAAAAAATACCC‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                   <  2:3464418/128‑1 (MQ=255)

                                                                             ttAT‑TTTTTTATATTAAAAAAAAAAAAAAAAAAAATCACATT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                                <  1:2366462/128‑1 (MQ=255)

                                                                               aT‑TTTTTTATATTAAAAAATAAAAAAAAAAAAAT‑‑ACAATTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                               <  1:2102941/128‑1 (MQ=255)

                                                                                t‑tttttTATATTAAAAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                             <  1:1396057/128‑1 (MQ=255)

                                                                                    ttttATATTTAAAAAAAAAAAAAAATAAATACCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                           <  2:3070025/127‑1 (MQ=255)

                                                                                     tttttatattaaaaaaaaaaaaaaaaaATTTACATTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                                            <  2:383121/117‑1 (MQ=255)

                                                                                     tttATATTAAAAAAAAAAAAAAAAAAAATACCC‑TTAAAA‑ATAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                           <  1:2995693/128‑1 (MQ=255)

                                                                                       ttaattaaaaaaTAAAAAAAAAAAAATAACC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                                        <  2:3904721/119‑1 (MQ=255)

                                                                                        aTCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAAATATATTTATTAAAATTCAATATTATACCAAATTTTATTTTTAAAATAATATATTGaa                                      >  1:463013/1‑127 (MQ=255)

                                                                                           ataacaAAAAAAAAAAAAAAAAT‑ACCATTAAAA‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                     <  1:3730128/125‑1 (MQ=255)

                                                                                            taaaaaaaaaaaaaaaaaCAAAACAC‑‑TTAAA‑AATT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                                   <  1:1368179/124‑1 (MQ=255)

                                                                                            tCAAAAATAAAAAAAAAAAAATACAC‑TTTAAA‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                                    <  1:791879/128‑1 (MQ=255)

                                                                                               aaaaTAAAAAAAAAAAAATAACC‑‑ATAAA‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                                <  1:3398081/127‑1 (MQ=255)

                                                                                                   tAAAAAAAAAAAAATCACAA‑‑TAAA‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                            <  1:1811652/128‑1 (MQ=255)

                                                                                                    aaaaaaaaaaaaAT‑ACCTTTT‑‑A‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                          <  1:1026002/128‑1 (MQ=255)

                                                                                                     aaaaaaaaaCAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAA‑‑TTAAAAGAAAGATAATTTTTTAAATTAGACAATTAAACCAAATTTTATTTTTTAAAAAAGTTTATAACTTAatatattataaa                       >  1:3128242/1‑122 (MQ=255)

                                                                                                       aaaaaaaaaaaaCCCTTAAAAA‑TAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                          <  1:3868914/128‑1 (MQ=255)

                                                                                                          aaaaCAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAAATAAAAACAAAGACAATTTAATAAAATTACAAATTATACACCATTTTATTTTTAAAATAAGATAATTACATAatatattatttatt                     >  1:1490791/1‑120 (MQ=255)

                                                                                                               aaaattacattaaa‑aatt‑aaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat                  <  1:177524/119‑1 (MQ=255)

                                                                                                                aaatacaattAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                <  1:883514/120‑1 (MQ=255)

                                                                                                                 aaatacccttaa‑aaat‑taaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                <  1:3257897/118‑1 (MQ=255)

                                                                                                                      acattaa‑aaat‑taaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc           <  1:4000906/123‑1 (MQ=255)

                                                                                                                       ccttaa‑aaat‑taaaaaAAAAAAAAAAAAAAAAAAAAAACAACCACCATTTATTTAAATTCCCATTTATACCCCATTTTTTTTTTAAAAAAAGAATTTTACAAaatatatataaaatatatataaaaat          >  1:3826223/5‑124 (MQ=255)

                                                                                                                           ta‑aaataaaaaaAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACtata       <  1:3963047/127‑1 (MQ=255)

                                                                                                                           aa‑aatt‑aaaaaaAAAAAAAAAAAAAAAATAAAAACAAAATATATTTATTAAAATTCCATATTTAACAAAATTTTTTTTTTAAAATAATATATTAAAAAAATTTATATAAAAAATATataatagaaatt      >  2:3668135/1‑122 (MQ=255)

AAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCT  >  CP016816/202368‑202621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`