New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_021214	772347 =	210 (0.940)	6 (0.030)	4/436	15.4	2.8%	coding (288/876 nt)	TMARI_RS03835	DUF4941 domain‑containing protein
	?	NC_021214	772524 =	211 (0.980)					coding (111/876 nt)	TMARI_RS03835	DUF4941 domain‑containing protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTGCTTGCGGAGACAATCACACTCGATGCGACTCTTTTGAATTTCGATGATCTGCTGCAGCTTCTGGAGATCCACTCCAGGGTGTTTGACGTCACCCCACCTTCCACTGGGACTGTGGGAAGTATGAGGTACCTCGAGTACAACGGGCACGTTCTTGCAAACGTTGAAGACCTCTACATACTCGACAACAACAAACTGCCGTCTCCTGGGGTTCCGGTGGAAACCTTGAAACTCTTCGGAGTGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_021214/772593‑772347 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagtggatCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGTGTGATTGTCTCCGCAAGCAAAGTCACAGAAAAGATAGCAAAGAGCAGTATCAACCTTCTCATCAATATTTGAAGATACTCCTTCCTATGAACTCTCTGAGGATCGATTTATCGGGAATATCTTCTATGTTCGTGATCGGAAGGAAGAAGTCCAGAAGTTTCAGAAGTCTCAGCGCTTCCGAGTACT  >  NC_021214/772524‑772758                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    gtgGCTTGCGGAGCCAATCACCCTCGATGCGACTCTTTTGAATTTCGATGATCTGCTGCAGCTTCTGGAGATCCACTCCAGGGTGTTTGACGTCACCCCACCTTCCACTGGGACTGTGGGAAGTATGAGGTACCTCGAGTACAACGGGCACGTTCTTGCAAACGTTGAAGACCTCTACATACTCGACAACAACAAACTGCCGTCTCCTGGGGTTCCGGTGGAAACCTTGAAACTCTTCG                                                                                                                                                                                                                                                     <  2:492403/236‑1   TGCTTGCGGAGACAATCACACTCGATGCGACTCTTTTGAATTTCGATGATCTGCTGCAGCTTCTGGAGATCCACTCCAGGGTGTTTGACGTCACCCCACCTTCCACTGGGACTGTGGGAAGTATGAGGTACCTCGAGTACAACGGGCACGTTCTTGCAATCGTTGAAGACCTCTACATACTCGACAACAACAAACTGCCGTCTCCTGGGGTTCCGGTGGAAACCTTGAAACTCTTCGGA                                                                                                                                                                                                                                                   <  2:616456/239‑1   TGCTTGCGGAGACAATCACACTCGATGCGACTCTTTTGAATTTCGATGATCTGCTGCAGCTTCTGGAGATCCACTCCAGGGTGTTTGACGTCACCCCACCTTCCACTGGGACTGTGGGAAGTATGAGGTACCTCGAGTACAACGGGCACGTTCTTGCAAACGTTGAAGACCTCTACATACTCGACAACAACAAACTGCCGTCTCCTGGGGTTCCGGTGGAAACCTTGAAACTCTTCGGA                                                                                                                                                                                                                                                   <  1:354922/239‑1   TGCTTGCGGAGACAATCACACTCGATGCGACTCTTTTGAATTTCGATGATCTGCTGCAGCTTCTAGAGATCCACTCCAGGGTGTTTGACGTCACCCCACCTTCCACTGGGACTGTGGGAAGTATGAGGTACCTCGAGTACAACGGGCACGTTCTTGCAAACGTTGAAGACCTCTACATACTCGACAACAACAAACTGCCGTCTCCTGGGGTTCCGGTGGAAACCTTGAAACTCTTCGGA                                                                                                                                                                                                                                                   <  1:262253/239‑1     CTTGCGGAGACAATCACACTCGATGCGACTCTTTTGAATTTCGATGATCTGCTGCAGCTTCTGGAGATCCACTCCAGGGTGTTTGACGTCACCCCACCTTCCACTGGGACTGTGGGAAGTATGAGGTACCTCGAGTACAACGGGCACGTTCTTGCAAACGTTGAAGACCTCTACATACTCGACAACAACAAACTGCCGTCTCCTGGGGTTCCGGTGGAAACCTTGAAACTCTTCGGAGT                                                                                                                                                                                                                                                 <  2:294698/239‑1      TTGCGGAGACAATCACACTCGATGCGACTCTTTTGAATTTCGATGATCTGCTGCAGCTTCTGGAGATCCACTCCAGGGTGTTTGACGTCCCCCCACCTTCCACTGGGACTGTGGGAAGTATGAGGTACCTCGAGTACAACGGGCACGTTCTTGCAAACGTTGAAGACCTCTACATACTCGACAACAACAAACTGCCGTCTCCTGGGGTTCCGGTGGAAACCTTGAAACTCTTCGGAGT                                                                                                                                                                                                                                                 <  2:559331/238‑1          GGAGACAATCCCACTCGATGCGACTCTTTTGAATTTCGATGATCTGCTGCAGCTTCTGGAGATCCACTCCAGGGTGTTTGACGTCACCCCACCTTCCACTGGGACTGTGGGAAGTATGAGGTACCTCGAGTACAACGGGCACGTTCTTGCAAACGTTGAAGACCTCTACATACTCGACAACAACAAACTGCCGTCTCCTGGGGTTCCGGTGGAAACCTTGAAACTCTTCGGAGTGGAT                                                                                                                                                                                                                                             <  2:620290/238‑1          GGAGACAATCACACTCGATGCGTCTGTTTTGAATTTCGATGATCTGCTGCAGCTGCTGGAGATCCACTCCAGGGTGTTTGACGTCACCCCACCTTCCACTGGGACTGTGGGAAGTATGAGGTACCTCGAGTACAACGGGCACGTTCTTGCAAACGTTGAAGACCTCTACATACTCGACAACAACAAACTGCCGTCTCCTGGGGTTCCGGTGGAAACCTTGAAACTCTTCGGAGTGGAT                                                                                                                                                                                                                                             <  2:865285/238‑1                                                                                            GTCACCCCACCTTCCACTGGGACTGTGGGAAGTATGAGGTACCTCGAGTACAACGGGCACGTTCTTGCAAACGTTGAAGACCTCTACATACTCGACAACAACAAACTGCCGTCTCCTGGGGTTCCGGTGGAAACCTTGAAACTCTTCGGAGTGGATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGTGTGATTGTCTCCGCAAGCAAAGTCACAGAAAAGA                                                                                                                                                          >  1:390342/1‑239                                                                                            GTCACCCCACCTTCCACTGGGACTGTGGGAAGTATGAGGTACCTCGAGTACAACGGGCACGTTCTTGCAAACGTTGAAGACCTCTACATACTCGACAACAACAAACTGCCGTCTCCTGGGGTTCCGGTGGAAACCTTGAAACTCTTCGGAGTGGATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGTGTGATTGTCTCCGCAAGCAAAGTCACAGAAAAGA                                                                                                                                                          >  1:612174/1‑239                                                                                            GTCACCCCACCTTCCACTGGGACTGTGGGAAGTATGAGGTACCTCGAGTACAACGGGCACGTTCTTGCAAACGTTGAAGACCTCTACATACTCGACAACAACAAACTGCCGTCTCCTGGGGTTCCGGTGGAAACCTTGAAACTCTTCGGAGTGGATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGA                                                                                                                                                                                                        >  1:288117/1‑193                                                                                            GTCACCCCACCTTCCACTGGGACTGTGGGAAGTATGAGGTACCTCGAGTACAACGGGCACGTTCTTGCAAACGTTGAAGACCTCTACATACTCGACAACAACAAACTGCCGTCTCCTGGGGTTCCGGTGGAAACCTTGAAACTCTTCGGAGTGGATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGA                                                                                                                                                                                                        <  2:288117/193‑1                                                                                                                                 GGTCCCTCGAGTACAACGGGCACGTTCTTGCAAACGTTGAAGACCTCTACATACTCGACAACAACAAACTGCCGTCTCCTGGGGTTCCGGTGGAAACCTTGAAACTCTTCGGAGTGGATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGTGTGATTGTCTCCGCAAGCAAAGTCACAGAAAAGATAGCAAAGAGCAGTATCAACCTTCTCATCAATATTT                                                                                                                      <  2:612174/238‑1                                                                                                                                                                                             ACAACAAACTGCCGTCTCCTGGGGTTCCGGTGGAAACCTTGAAACTCTTCGGAGTGGATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGTGTGATTGTCTCCGCAAGCAAAGTCACAGAAAAGATAGCAAAGAGCAGTATCAACCTTCTCATCAATATTTGAAGATACTCCTTCCTATGAACTCTCTGAGGATCGATTTATCGGGAATATCTTCTATGTTC                                                         <  2:390342/239‑1                                                                                                                                                                                                                                               GGAGTGGATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGTGTGATTGTCTCCGCAAGCAAAGTCTCAGAAAAGATAGCAAAGAGCAGTATCAACCTTCTCATCAATATTTGAAGATACTCCTTCCTATGAACTCTCTGAGGATCGATTTATCGGGAATATCTTCTATGTTCGTGATCGGAAGGAAGAAGTCCAGAAGTTTCAGAAGTCTCAGCGCTTCCGA       <  1:191817/239‑1                                                                                                                                                                                                                                                GAGTGGATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGTGTGATTGTCTCCGCAAGCAAAGTCACAGAAAAGATAGCAAAGAGCAGTATCAACCTTCTCATCAATATTTGAAGATACTCCTTCCTATGAACTCTCTGAGGATCGATTTATCGGGAATATCTTCTATGTTCGTGATCGGAAGGAAGAAGTCCAGAAGTTTCAGAAGTCTCAGCGCTTCCGAG      >  2:347593/1‑239                                                                                                                                                                                                                                                 AGTGGATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGTGTGATTGTCTCCGCAAGCAAAGTCACAGAAAAGATAGCAAAGAGCAGTATCAACCTTCTCATCAATATTTGAAGATACTCCTTCCTATGAACTCTCTGAGGATCGATTTATCGGGAATATCTTCTATGTTCGTGATCGGAAGGAAGAAGTCCAGAAGTTTCAGAAGTCTCAGCGCTTCCGAG      <  1:615362/238‑1                                                                                                                                                                                                                                                 AGTGGATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGTGTGATTGTCTCCGCAAGCAAAGTCACAGAAAAGATAGCAAAGAGCAGTATCAACCTTCTCATCAATATTTGAAGATACTCCTTCCTATGAACTCTCTGAGGATCGATTTATCGGGAATATCTTCTATGTTCGTGATCGGAAGGAAGAAGTCCAGAAGTTTCAGAAGTCTCAGCGCTTCCGAG      <  2:288738/238‑1                                                                                                                                                                                                                                                 AGTGGATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGTGTGATTGTCTCCGCAAGCAAAGTCACAGAAAAGATAGCAAAGAGCAGTATCAACCTTCTCATCAATATTTGAAGATACTCCTTCCTATGAACTCTCTGAGGATCGATTTATCGGGAATATCTTCTATGTTCGTGATCGGAAGGAAGAAGTCCAGAAGTTTCAGAAGTCTCAGCGCTTCCGAG      <  1:879388/238‑1                                                                                                                                                                                                                                                 AGTGGATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGTGTGATTGTCTCCGCAAGCAAAGTCACAGAAAAGATAGCAAAGAGCAGTATCAACCTTCTCATCAATATTTGAAGATACTCCTTCCTATGAACTCTCTGAGGATCGATTTATCGGGAATATCTTCTATGTTCGTGATCGGAAGGAAGAAGTCCAGAAGTTTCAGAAGTCTCAGCGCTTCCGAG      <  1:616456/238‑1                                                                                                                                                                                                                                                 AGTGGATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGAGTGATTGTCTCCGCAAGCAAAGTCACAGAAAAGATAGCAAAGAGCAGTATCAACCTTCTCATCAATATTTGAAGATACTCCTTCCTATGAACTCTCTGAGGATCGATTTATCGGGAATATCTTCTATGTTCGTGATCGGAAGGAAGAAGTCCAGAAGTTTCAGAAGTCTCAGCGCTTCCGAG      <  2:587556/238‑1                                                                                                                                                                                                                                                    GGATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGTGTGATTGTCTCCGCAAGCAAAGTCACAGAAAAGATAGCAAAGAGCAGTATCAACCTTCTCATCAATATTTGAAGATACTCCTTCCTATGAACTCTCTGAGGATCGATTTATCGGGAATATCTTCTATGTTCGTGATCGGAAGGAAGAAGTCCAGAAGTTTCAGAAGTCTCAGCGCTTCCGAGTACT  <  1:559331/239‑1                                                                                                                                                                                                                                                    GGATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGTGTGATTGTCTCCGCAAGCAAAGTCACAGAAAAGATAGCAAAGAGCAGTATCAACCTTCTCATCAATATTTGAAGATACTCCTTCCTATGAACTCTCTGAGGATCGATTTATCGGGAATATCTTCTATGTTCGTGATCGGAAGGAAGAAGTCCAGAAGTTTCAGAAGTCTCAGCGCTTCCGAGTAC   <  2:204801/238‑1                                                                                                                                                                                                                                                    GGATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGTGTGATTGTCTCCGCAAGCAAAGTCACAGAAAAGATAGCAAAGAGCAGTATCAACCTTCTCATCAATATTTGAAGATACTCCTTCCTATGAACTCTCTGAGGATCGATTTATCGGGAATATCTTCTATGTTCGTGATCGGAAGGAAGAAGTCCAGAAGTTTCAGAAGTCTCAGCGCTTCCGAGTA    <  2:632627/237‑1                                                                                                                                                                                                                                                      ATCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGTGTGATTGTCTCCGCAAGCAAAGTCACAGAAAAGATAGCAAAGAGCAGTATCAACCTTCTCATCAATATTTGAAGATACTCCTTCCTATGAACTCTCTGAGGATCGATTTATCGGGAATATCTTCTATGTTCGTGATCGGAAGGAAGAAGTCCAGAAGTTTCAGAAGTCTCAGCGCTTCCGAGTAC   >  2:345514/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTTGCTTGCGGAGACAATCACACTCGATGCGACTCTTTTGAATTTCGATGATCTGCTGCAGCTTCTGGAGATCCACTCCAGGGTGTTTGACGTCACCCCACCTTCCACTGGGACTGTGGGAAGTATGAGGTACCTCGAGTACAACGGGCACGTTCTTGCAAACGTTGAAGACCTCTACATACTCGACAACAACAAACTGCCGTCTCCTGGGGTTCCGGTGGAAACCTTGAAACTCTTCGGAGTGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_021214/772593‑772347 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggagtggatCTCCAGAAGCTGCAGCAGATCATCGAAATTCAAAAGAGTCGCATCGAGTGTGATTGTCTCCGCAAGCAAAGTCACAGAAAAGATAGCAAAGAGCAGTATCAACCTTCTCATCAATATTTGAAGATACTCCTTCCTATGAACTCTCTGAGGATCGATTTATCGGGAATATCTTCTATGTTCGTGATCGGAAGGAAGAAGTCCAGAAGTTTCAGAAGTCTCAGCGCTTCCGAGTACT  >  NC_021214/772524‑772758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.