| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_021214 | 63321 = | 274 (0.960) | 5 (0.020) | 5/436 | 24.1 | 1.8% | coding (3179/3180 nt) | TMARI_RS00285 | endo‑1,4‑beta‑xylanase A |
| ? | NC_021214 | 63342 = | 279 (1.010) | intergenic (+20/‑36) | TMARI_RS00285/TMARI_RS00290 | endo‑1,4‑beta‑xylanase A/carbohydrate‑binding protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGGTTGCATCTGCGTTGATGTAGTTCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_021214/63564‑63321‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccctcCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGCGTGCTGGGAGTTTTCGCTTTTCTGATCATCCTTTCAGGATGTGTCTCTGCACCTGGTACGGGAGGAGCATTGAACAAGGTTCTAAAGGTAGAAACGGGTGATCAAGGCTGGAAAACGGCATGGTTCTATGGTATTGGGAACTACATCAACGCAGATGCAACCTACACCTACAGCGTC > NC_021214/63342‑63578 AGGTTGCATCTGCGTTGATGTAGTTCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCC < 1:611747/240‑1AGGTTGCATCTGCGTTGATGTAGTTCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCC > 2:570127/1‑239AGGTTGCATCTGCGTTGATGTAGTTCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCC > 2:162017/1‑239AGGTTGCATCTGCGTTGATGTAGTTCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCC < 2:152174/239‑1 GTTGCATCTGCGTTGATGTAGTTCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCC > 2:1140950/1‑238 TTGCATCTGCGTTGATGTAGTTCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCC < 1:1198403/239‑1 TGCATCTGCGTTGATGTAGTTCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCCTC > 2:1012790/1‑240 GCATCTGCGTTGATGTAGTTCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCCTC > 2:1096922/1‑239 GCATCTGCGTTGATGTAGTTCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCCTC > 2:206579/1‑239 GCATCTGCGTTGATGTAGTTCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCCTC > 2:1069214/1‑239 CATCTGCGTTGATGTAGTTCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCCTC > 1:206482/1‑238 CATCTGCGTTGATGTAGTTCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCCTC > 2:1153171/1‑238 TGATGTAGTTCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCC < 2:553437/227‑1 TGATGTAGTTCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGAAGGGGGAAATCTCCCCCC > 1:553437/1‑227 TCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCCTCCTTATTTGATCATAATCTTA > 2:938926/1‑240 TCCAGCCTTGATCCCCCGGTTATACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCACGTGCAGATACACAACCTGAAAGGATGATCATAAAAGCGAAACCCCCCAACACGCTCAACAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCCTCCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATG < 1:974643/240‑1 ACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCCTCCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGC < 1:938926/240‑1 GTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCCTCCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGCGTGC < 1:861615/240‑1 CAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCCTC > 1:961421/1‑136 CAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCCTC < 2:961421/136‑1 AGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCCTCCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGCGTGCTGGGAGTTTTCGCTTTTCTGATCATCCTTTCAGGATGTGTCTCTGCACCTGGTACGGGAGGAG < 2:109707/240‑1 CCCCCTCCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGCGTGCTGGGAGTTTTCGCTTTTCTGATCATCCTTTCAGGATGTGTCTCTGCACCTGGTACGGGAGGAGCATTGAACAAGGTTCTAAAGGTAGAAACGGGTGATCAAGGCTGGAAAACGGCATGGTTCTATGGTATTGGGAACTACATCAACGCAGATGCAACCTACACCTACAG < 2:200062/240‑1 CCCCCTCCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGCGTGCTGGGAGTTTTCGCTTTTCTGATCATCCTTTCAGGATGTGTCTCTGCACCTGGTACGGGAGGAGCATTGAACAAGGTTCTAAAGGTAGAAACGGGTGATCAAGGCTGGAAAACGGCATGGTTCTATGGTATTGGGAACTACATCAACGCAGATGCAACCTACACCTACA > 1:1053981/1‑239 CCCCCTCCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGCGTGCTGGGAGTTTTCGCTTTTCTGATCATCCTTTCAGGATGTGTCTCTGCACCTGGTACGGGAGGAGCATTGAACAAGGTTCTAAAGGTAGAAACGGGTGATCAAGGCTGGAAAACGGCATGGTTCTATGGTATTGGGAACTACATCAACGCAGATGCAACCTACACCTACA > 1:845141/1‑239 CCCCTCCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGCGTGCTGGGAGTTTTCGCTTTTCTGATCATCCTTTCAGGATGTGTCTCTGCACCTGGTACGGGAGGAGCATTGAACAAGGTTCTAAAGGTAGAAACGGGTGATCAAGGCTGGAAAACGGCATGGTTCTATGGTATTGGGAACTACATCAACGCAGATGCAACCTACACCTACAGC < 2:394175/240‑1 CCTCCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGCGTGCTGGGAGTTTTCGCTTTTCTGATCATCCTTTCAGGATGTGTCTCTGCACCTGGTACGGGAGGAGCATTGAACAAGGTTCTAAAGGTAGAAACGGGTGATCAAGGCTGGAAAACGGCATGGTTCTATGGTATTGGGAACTACATCAACGCAGATGCAACCTACACCTACAGCGT < 2:684108/240‑1 CTCCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGCGTGCTGGGAGTTTTCGCTTTCCTGATCATCCTTTCAGGATGTGTCTCTGCACCTGGTACGGGAGGAGCATTGAACAAGGTTCTAAAGGTAGAAACGGGTGATCAAGGCTGGAAAACGGCATGGTTCTATGGTATTGGGAACTACATCAACGCAGATGCAACCTACACCTACAGCGTC < 1:554239/240‑1 TCCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGCGTGCTGGGAGTTTTCGCTTTTCTGATCATCCTTTCAGGATGTGTCTCTGCACCTGGTACGGGAGGAGCATTGAACAAGGTTCTAAAGGTAGAAACGGGTGATCAAGGCTGGAAAACGGCATGGTTCTATGGTATTGGGAACTACATCAACGCAGATGCAACCTACACCTACAG > 1:85566/1‑235 TCCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGCGTGCTGGGAGTTTTCGCTTTTCTGATCATCCTTTCAGGATGTGTCTCTGCACCTGGTACGGGAGGAGCATTGAACAAGGTTCTAAAGGTAGAAACGGGTGATCAAGGCTGGAAAACGGCATGGTTCTATGGTATTGGGAACTACATCAACGCAGATGCAACCTACACCTACAG < 2:85566/235‑1 CCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGCGTGCTGGGAGTTTTCGCTTTTCTGATCATCCTTTCAG < 1:688219/98‑1 CCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGCGTGCTGGGAGTTTTCGCTTTTCTGATCATCCTTTCAG < 1:32290/98‑1 CCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGCGTGCTGGGAGTTTTCGCTTTTCTGATCATCCTTTCAG > 2:32290/1‑98 CCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGCGTGCTGGGAGTTTTCGCTTTTCTGATCATCCTTTCAG > 2:688219/1‑98 AGGTTGCATCTGCGTTGATGTAGTTCCCAATACCATAGAACCATGCCGTTTTCCAGCCTTGATCACCCGTTTCTACCTTTAGAACCTTGTTCAATGCTCCTCCCGTACCAGGTGCAGAGACACATCCTGAAAGGATGATCAGAAAAGCGAAAACTCCCAGCACGCTCATCAAAAACCATTTCTTCATGATCTATCTACCCCCTTAAGATTATGATCAAATAAGGAGGGGGAAATCTCCCCCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_021214/63564‑63321‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccctcCTTATTTGATCATAATCTTAAGGGGGTAGATAGATCATGAAGAAATGGTTTTTGATGAGCGTGCTGGGAGTTTTCGCTTTTCTGATCATCCTTTCAGGATGTGTCTCTGCACCTGGTACGGGAGGAGCATTGAACAAGGTTCTAAAGGTAGAAACGGGTGATCAAGGCTGGAAAACGGCATGGTTCTATGGTATTGGGAACTACATCAACGCAGATGCAACCTACACCTACAGCGTC > NC_021214/63342‑63578 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |