| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_021214 | 228871 = | 275 (0.960) | 5 (0.020) | 5/440 | 24.2 | 1.8% | coding (104/1425 nt) | TMARI_RS01105 | glycine dehydrogenase |
| ? | NC_021214 | 229168 = | 292 (1.040) | coding (401/1425 nt) | TMARI_RS01105 | glycine dehydrogenase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCACAACATTTTTTTCAGTTCGTACATGAGCCGAAGACTGCCCTGAACAGTTTCGACGGGCTGATACGGGTGTATCTCTCTGAATCCTTCGAGATTCGCAGCTTTTTCGTTCAGTTTGGGATTGTACTTCATGGTGCAGGAACCGAGGGGGTAGATTCCGAGATCCACAGAGTAGTTCTTTCTGGCAAGATTGGTGTAATGCCTCACCAAATCAGGCTCGCTCACCTCGGGAAGCTCCGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_021214/229113‑228871‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggagAACTCACGGGAATGCTGATAGTGAGAGAGTACTTTAAAAACAGAGGGGACACTGGAAGAAAGAAAGTTCTCGTACCGGATTCTGCCCACGGTACCAACCCAGCATCTGCTTCGATGGTTGGTTTTGAGGTGGTGGAGATAAAGAGCAAAAACGGTATGGTGGATGTGGAAGATTTGAAAAAACTACTGGATGAAGAAGTAGCCGCTGTGATGCTCACAAATCCAAACAC > NC_021214/229168‑229396 CGCACAACATTTTTTTCAGTTCGTACATGAGCCGAAGACTGCCCTGAACAGTTTCGACGGGCTGATACGGGTGTATCTCTCTGAATCCTTCGAGATTCGCAGCTTTTTCGTTCAGTTTGGGATTGTACTTCATGGTGCAGGAACCGAGGGGGTAGATTCCGAGATCCACAGAGTAGTTCTTTCTGGCAAGATTGGTGTAATGCCTCACCAAATCAGGCTCGCTCACCTCGGGAAGCTCCG > 2:122705/1‑240CGCACAACATTTTTTTCAGTTCGTACATGAGCCGAAGACTGCCCTGAACAGTTTCGACGGGCTGATACGGGTGTATCTCTCTGAATCCTTCGAGATTCGCAGCTTTTTCGTTCAGTTTGGGATTGTACTTCATGGTGCAGGAACCGAGGGGGTAGATTCCGAGATCCACAGAGTAGTTCTTTCTGGCAAGATTGGTGTAATGCCTCACCAAATCAGGCTCGCTCACCTCGGGAAGCTCCG > 2:655149/1‑240 GCACAACATTTTTTTCAGTTCGTACATGAGCCGAAGACTGCCCTGAACAGTTTCGACGGGCTGATACGGGTGTATCTCTCTGAATCCTTCGAGATTCGCAGCTTTTTCGTTCAGTTTGGGATTGTACTTCATGGTGCAGGAACCGAGGGGGTAGATTCCGAGATCCACAGAGTAGTTCTTTCTGGCAAGATTGGGGTAATGCCTCACCAAATCAGGCTCGCTCACCTCGGGAAGCTCCGG > 2:769708/1‑240 GATTCGCAGCTTTTTCGTTCAGTTTGGGATTGTACTTCATGGTGCAGGAACCGAGGGGGTAGATTCCGAGATCCACAGAGTAGTTCTTTCTGGCAAGATTGGTGTAATGCCTCACCAAATCAGGCTCGCTCACCTCGGGAAGCTCCGGAGAACTCACGGGAATGCTGATAGTGAGAGAGTACTTTAAAAACAGAGGGGACACTGGAAGAAAGAAAGTTCTCGTACCGGATTCTGCCCAC < 2:69005/239‑1 CATGGTGCAGGAACCGAGGGGGTAGATTCCGAGATCCACAGAGTAGTTCTTTCTGGCAAGATTGGTGTAATGCCTCACCAAATCAGGCTCGCTCACCTCGGGAAGCTCCGGAGAACTCACGGGAATGCTGATAGTGAGAGAGTACTTTAAAAACAGAGGGGACACTGGAAGAAAGAAAGTTCTCGTACCGGATTCTGC > 1:75623/1‑198 CATGGTGCAGGAACCGAGGGGGTAGATTCCGAGATCCACAGAGTAGTTCTTTCTGGCAAGATTGGTGTAATGCCTCACCAAATCAGGCTCGCTCACCTCGGGAAGCTCCGGAGAACTCACGGGAATGCTGATAGTGAGAGAGTACTTTAAAAACAGAGGGGACACTGGAAGAAAGAAAGTTCTCGTACCGGATTCTGC < 2:75623/198‑1 ggagctaCCGGAGAACTCACGGGAATGCTGATAGTGAGAGAGTACTTTAAAAACAGAGGGGACACTGGAAGAAAGAAAGTTCTCGTACCGGATTCTGCCCACGGTACCAACCCAGCATCTGCTTCGATGGTTGGTTTTGAGGTGGTGGAGATAAAGAGCAAAAACGGTATGGTGGATGTGGAAGATTTGAAAAAACTACTGGATGAAGAAGTAGCCGCTGTGATGCTCACAAATCCAAAC < 1:1187577/233‑1 agctaCCGGAGAACTGAAGGGAAGGCGGAAAGTGAGAGAGTACTTTAAAAACAGAGGAGACACTGGAAGAAAGAAAGTTCTCGTACCGGATTCTGCCCACGGTACCAACCCAGCATCTGCTTCGATGGTTGGTTTTGAGGTGGTGGAGATAAAGAGCAAAAACGGTATGGTGGATGTGGAAGATTTGAAAAAACTACTGGATGAAGAAGTAGCCGCTGTGATGCTCACAAAACCAAACAC < 1:6669/235‑1 CGCACAACATTTTTTTCAGTTCGTACATGAGCCGAAGACTGCCCTGAACAGTTTCGACGGGCTGATACGGGTGTATCTCTCTGAATCCTTCGAGATTCGCAGCTTTTTCGTTCAGTTTGGGATTGTACTTCATGGTGCAGGAACCGAGGGGGTAGATTCCGAGATCCACAGAGTAGTTCTTTCTGGCAAGATTGGTGTAATGCCTCACCAAATCAGGCTCGCTCACCTCGGGAAGCTCCGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_021214/229113‑228871‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggagAACTCACGGGAATGCTGATAGTGAGAGAGTACTTTAAAAACAGAGGGGACACTGGAAGAAAGAAAGTTCTCGTACCGGATTCTGCCCACGGTACCAACCCAGCATCTGCTTCGATGGTTGGTTTTGAGGTGGTGGAGATAAAGAGCAAAAACGGTATGGTGGATGTGGAAGATTTGAAAAAACTACTGGATGAAGAAGTAGCCGCTGTGATGCTCACAAATCCAAACAC > NC_021214/229168‑229396 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |