| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_021214 | 1071755 = | 291 (1.020) | 6 (0.020) | 5/440 | 24.2 | 1.9% | coding (662/1527 nt) | TMARI_RS05395 | FMN‑binding glutamate synthase family protein |
| ? | NC_021214 | 1071819 = | 339 (1.210) | coding (726/1527 nt) | TMARI_RS05395 | FMN‑binding glutamate synthase family protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGCACCGTATCTGAGAGCCATGGCAAGTTCAACAGCCGAGTAAGCTCCCGTCTTCAAGGTGATTCGTTTGAACCCGAGTTTTCTGAGTCTTTCCACTTCTTTCAGGAAGGACTCCTTAGAGACAAAACCAAGTCTTGAGTGTCTTTCGAACTCCTTGATTTCTCCCTCTTTGAACGCTCTCTGAACTTCCGGAAGTTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAGTTCCAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_021214/1071996‑1071755‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagagAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTTGTCTCTAAGGAGTCCTTCCTGAAAGAAGTGGAAAGACTCAGAAAACTCGGGTTCAAACGAATCACCTTGAAGACGGGAGCTTACTCGGCTGTTGAACTTGCCATGGCTCTCAGATACGGTGCTGAGGCGAAGGTGGATTTGATCACCGTCGATGGAGCACCGGGTGGAACGGGTATGAGCCCGT > NC_021214/1071819‑1072057 AGCACCGTATCTGAGAGCCATGGCAAGTTCAACAGCCGAGTAAGCTCCCGTCTTCAAGGTGATTCGTTTGAACCCGAGTTTTCTGAGTCTTTCCACTTCTTTCAGGAAGGACTCCTTAGAGACAAAACCAAGTCTTGAGTGTCTTTCGAACTCCTTGATTTCTCCCTCTTTGAACGCTCTCTGAACTTCCGGAAGTTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAGTTCCAG > 2:261542/1‑240 ACCGTATCTGAGAGCCATGGCAAGTTCAACAGCCGAGTAAGCTCCCGTCTTCAAGGTGATTCGTTTGAACCCGAGTTTTCTGAGTCTTTCCACTTCTTTCAGGAAGGACTCCTTAGAGACAAAACCAAGTCTTGAGTGTCTTTCGAACTCCTTGATTTCTCCCTCTTTGAACGCTCTCTGAACTTCCGGAAGTTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAGTTCCAGAG < 2:761545/239‑1 CCGTATCTGAGAGCCATGGCAAGTTCAACAGCCGAGTAAGCTCCCGTCTTCAAGGTGATTCGTTTGAACCCGAGTTTTCTGAGTCTTTCCACTTCTTTCAGGAAGGACTCCTTAGAGACAAAACCAAGTCTTGAGTGTCTTTCGAACTCCTTGATTTCTCCCTCTTTGAACGCTCTCTGAACTTCCGGAAGTTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAGTTCCAG < 1:35265/236‑1 CCGTATCTGAGAGCCATGGCAAGTTCAACAGCCGAGTAAGCTCCCGTCTTCAAGGTGATTCGTTTGAACCCGAGTTTTCTGAGTCTTTCCACTTCTTTCAGGAAGGACTCCTTAGAGACAAAACCAAGTCTTGAGTGTCTTTCGAACTCCTTGATTTCTCCCTCTTTGAACGCTCTCTGAACTTCCGGAAGTTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAGTTCCAG > 2:35265/1‑236 AAGTTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAGTTCCAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTTGTCTCTAAGGAGTCCTTCCTGAAAGAAGTGGAAAGACTCAGAAAACTCGGGTTCAAACGAATCACCTTGAAGACGGGAGCTTACTCGGCTGTTGAACTTGCCATGGC < 1:721764/212‑1 AAGTTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAGTTCCAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTTGTCTCTAAGGAGTCCTTCCTGAAAGAAGTGGAAAGACTCAGAAAACTCGGGTTCAAACGAATCACCTTGAAGACGGGAGCTTACTCGGCTGTTGAACTTGCCATGGC > 2:721764/1‑212 TTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAGTTCCAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTTGTCTCTAAGGAGTCCTTCCTGAAAGAAGTGGAAAGACTCAGAAAACTCGGGTTCAAACGAATCACCTTGAAGACGGGAGCTTACTCGGCTGTTGAACTTGCCATGGCTCTCAGATACGGTGCTGAGGCGAAGGTGGAT > 2:723627/1‑240 TTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAGTTCCAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTT > 1:782115/1‑102 TTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAGTTCCAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTT < 2:782115/102‑1 GGAGAACTATATAACCTCTTCTTTTCAGTTCCAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTTGTCTCTAAGGAGTCCTTCCTGAAAGAAGTGGAAAGACTCAGAAAACTCGGGTTCAAACGAATCACCTTGAAGACGGGAGCTTACTCGGCTGTTGAACTTGCCATGGCTCTCAGATACGGTGCTGAGGCGAAGGTGGATTTGATCACCG < 1:723627/239‑1 GAGCGTTCAAAGATGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTTGTCTCTAAGGAGTCCTTCCTGAAAGAAGTGGAAAGACTCAGAAAACTCGGGTTCAAACGAATCACCTTGAAGACGGGAGCTTACTCGGCTGTTGAACTTGCCATGGCTCTCAGATACGGTGCTGAGGCGAAGGTGGATTTGATCACCGTCGATGGAGCACCGGGTGGAACGGGGATGAGCCCtt > 2:1150925/1‑238 AGCACCGTATCTGAGAGCCATGGCAAGTTCAACAGCCGAGTAAGCTCCCGTCTTCAAGGTGATTCGTTTGAACCCGAGTTTTCTGAGTCTTTCCACTTCTTTCAGGAAGGACTCCTTAGAGACAAAACCAAGTCTTGAGTGTCTTTCGAACTCCTTGATTTCTCCCTCTTTGAACGCTCTCTGAACTTCCGGAAGTTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAGTTCCAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_021214/1071996‑1071755‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagagAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTTGTCTCTAAGGAGTCCTTCCTGAAAGAAGTGGAAAGACTCAGAAAACTCGGGTTCAAACGAATCACCTTGAAGACGGGAGCTTACTCGGCTGTTGAACTTGCCATGGCTCTCAGATACGGTGCTGAGGCGAAGGTGGATTTGATCACCGTCGATGGAGCACCGGGTGGAACGGGTATGAGCCCGT > NC_021214/1071819‑1072057 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |