New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_021214	1020436 =	345 (1.000)	6 (0.020)	5/438	25.2	1.8%	coding (16/555 nt)	TMARI_RS05115	diguanylate cyclase
	?	NC_021214	= 1020432	336 (1.000)					coding (20/555 nt)	TMARI_RS05115	diguanylate cyclase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGACCCCAGCTACACCTCGCAAACCTGTCCCAGGTGCGGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTTGTATGTCAGAACTGCGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_021214/1020679‑1020436 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcctTCAGGGAGAGGGTAGCTGACGAGATAGATCCCGTCGTTTCACCTGAAACTTATGAGAAACTTCCCGATGAGATCAAAAGGGTTGCCGGAATGCTCACACCAGACACAGAATATTCGCTGGTTCGAGACAACGACATAAAAATAGAAAGTGGTTATCTATCTTTAGAAGAACTGAATGCTATTTTCAAAACGTTGCCGTTCGATATTACCTTTGTGGATAAACACGGCAGAGTTCGTTTC  <  NC_021214/1020432‑1020194                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CGACCCCAGCTACACCTCGCAAACCTGTCCCAGGTGCGGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTTGTATGTCAGAACTGCGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGCAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGAAAGCC                                                                                                                                                                                                                                                      >  2:1428059/1‑239  GACCCCAGCTACACCTCGCAAACCTGTCCCAGGTGCGGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTTGTATGTCAGAACTGCGGCTACGAAGAACACGCATACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCT                                                                                                                                                                                                                                                    <  2:949673/240‑1   ACCCCAGCTACACCTCGCAAACCTGTCCCAGGTGCGGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTTGTATGTCAGAACTGCGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTC                                                                                                                                                                                                                                                   <  2:8087/240‑1   ACCCCAGCTACACCTCGCAAACCTGTCCCAGGTGCGGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTTGTATGTCAGAACTGCGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTC                                                                                                                                                                                                                                                   <  2:636837/240‑1   ACCCCAGCTACACCTCGCAAACCTGTCCCAGGTGCGGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTTGTATGTCAGAACTGCGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTC                                                                                                                                                                                                                                                   <  2:27649/240‑1   ACCCCAGCTACACCTCGCAAACCTGTCCCAGGTGCGGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTTGTATGTCAGAACTGCGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTC                                                                                                                                                                                                                                                   <  2:1327554/240‑1   ACCCCAGCTACACCTCGCAAACCTGTCCCAGGTGCGGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTTGTATGTCAGAACTGCGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCT                                                                                                                                                                                                                                                    >  2:1468593/1‑239    CCCCATCTACACCTCGCAAACCTGTCCCAGGTGCGGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTTGTATGTCAGAACTGCGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTCC                                                                                                                                                                                                                                                  <  1:542220/240‑1    CCCCAGCTACCCCGCGCAAACCTGTCCCAGGTGCTGCCAAGTCTCGAAAGAAACCAGACCAGACCATGGAGAGCTGTTTGTATGTCAGAACTGCGGCTACGAAGAACACGCAGACATAGTTAGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCGGATGCTCCCCGTTTGGGTTGAGCATGCCCTCC                                                                                                                                                                                                                                                  <  2:890229/240‑1    CCCCAGCTACACCTCGCAGACCGGTCCCAGGTGCGGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTGGTAGGTCAGAACTGCGGCCACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTCC                                                                                                                                                                                                                                                  <  2:1382497/240‑1    CCCCAGCTACACCTCGCAAACCTGTCCCAGGTGCGGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTTGTATGTCAGAACTGCGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTCC                                                                                                                                                                                                                                                  <  2:588156/240‑1    CCCCAGCTACACCTCGCAAACCTGTCCCAGGTGCGGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTTGTATGTCAGAACTGCGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTCC                                                                                                                                                                                                                                                  <  2:1452673/240‑1    CCCCAGCTACACCTCGCAAACCTGGCCCAGGTGCGGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTTGTATGTCAGAACTGCGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTCC                                                                                                                                                                                                                                                  <  2:1224736/240‑1       CAGCTACACCTCGCAAACCTGTCCCAGGTGCGGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTTGTATGTCAGAACTGCGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTCCTTC                                                                                                                                                                                                                                               <  2:440214/240‑1                                      GGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTTGTATGTCAAAGCTGCGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGCCAAAGACCAGCAGGTCAATCTTGAAAAGCTTTTAGGGGCCGTTGTCAGCCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTCCTTCAGAGGGAGGGTAGCTGACGAGATAGATCCCG                                                                                                                                                                                                                <  1:365071/240‑1                                                                                                 CGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCC                                                                                                                                                                                                                                                     >  2:687399/1‑144                                                                                                 CGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCC                                                                                                                                                                                                                                                     <  1:687399/144‑1                                                                                                                                                      TTCTTGCCAAAGACCAGCAGGTCAATCTTGAAAAGCTTTTAGGGGCCGTTGTCAGCCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTCCTTCAGAGGGAGGGTAGCTGACGAGATAGATCCCG                                                                                                                                                                                                                <  2:1123111/128‑1                                                                                                                                                      TTCTTGCCAAAGACCAGCAGGTCAATCTTGAAAAGCTTTTAGGGGCCGTTGTCAGCCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTCCTTCAGAGGGAGGGTAGCTGACGAGATAGATCCCG                                                                                                                                                                                                                >  1:1123111/1‑128                                                                                                                                                                                 TTGAAAAGCTTTTAGGGGCCGTTGTCAGCCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTCCTTCAGAGGGAGGGTAGCTGACGAGATAGATCCCGTCGTTTCACCTGAAACTTATGAGAAACTTCCCGATGAGATCAAAAGGGTT                                                                                                                                                              >  1:531642/1‑151                                                                                                                                                                                 TTGAAAAGCTTTTAGGGGCCGTTGTCAGCCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTCCTTCAGAGGGAGGGTAGCTGACGAGATAGATCCCGTCGTTTCACCTGAAACTTATGAGAAACTTCCCGATGAGATCAAAAGGGTT                                                                                                                                                              <  2:531642/151‑1                                                                                                                                                                                                                                               CCTCCTTCAGGGAAAGGGTAGCTGACGAGATAGATCCCGTCGTTTCACCTGAAACTTATGAGAAACTTCCCGATGAGATCAAAAGGGTTGCCGGAATGCTCACACCAGACACAGAATATTCGCTGGTTCGAGACAACGACATAAAAATAGAAAGTGGTTATCTATCTTTAGAAGAACTGAATGCTATTTTCAAAACGTTGCCGTTCGATATTACCTTTGTAGATAAACACGGCAGAGTTC       <  2:1304997/240‑1                                                                                                                                                                                                                                                CTCCTTCAGGGAGAGGGTAGCTGACGAGATAGATCCCGTCGTTTCACCTGAAACTTATGAGAAACTTCCCGATGAGATCAAAAGGGTTGCCGGAATGCTCACACCAGACACA                                                                                                                                      >  2:1138818/1‑112                                                                                                                                                                                                                                                CTCCTTCAGGGAGAGGGTAGCTGACGAGATAGATCCCGTCGTTTCACCTGAAACTTATGAGAAACTTCCCGATGAGATCAAAAGGGTTGCCGGAATGCTCACACCAGACACA                                                                                                                                      <  1:1138818/112‑1                                                                                                                                                                                                                                                  CCTTCAGGGAGAGGGTAGCTGACGAGATAGATCCCGTCGTTTCACCTGAAACTTATGAGAAACTTCCCGATGAGATCAAAAGGGTTGCCGGAATGCTCACACCAGACACAGAATATTCGCTGGTTCGAGACAACGACATAAAAATAGAAAGTGGTTATCTATCTTTAGAAGAACTGAATGCTATTTTCAAAACGTTGCCGTTCGATATTACCTTTGTGGATAAACACGGCAGAGTTCGTT    <  2:506651/240‑1                                                                                                                                                                                                                                                   CTTCAGGGAGAGGGTAGCTGACGAGATAGATCCCGTCGTTTCACCTGAAACTTATGAGAAACTTCCCGATGAGATCAAAAGGGTTGCCGGAATGCTCACACCAGACACAGAATATTCGCTGGTTCGAGACAACGACATAAAAATAGAAAGTGGTTATCTATCTTTAGAAGAACTGAATGCTATTTTCAAAACGTTGCCGTTCGATATTACCTTTGTGGATAAACACGGCAGAGTTCGTTT   >  2:391998/1‑240                                                                                                                                                                                                                                                   CTTCAGGGAGAGGGTAGCTGACGAGATAGATCCCGTCGTTTCACCTGAAACTTATGAGAAACTTCCCGATGAGATCAAAAGGGTTGCCGGAATGCTCACACCAGACACAGAATATTCGCTGGTTCGAGACAACGACATAAAAATAGAAAGTGGTTATCTATCTTTAGAAGAACTGAATGCTATTTTCAAA                                                     <  2:911685/190‑1                                                                                                                                                                                                                                                   CTTCAGGGAGAGGGTAGCTGACGAGATAGATCCCGTCGTTTCACCTGAAACTTATGAGAAACTTCCCGATGAGATCAAAAGGGTTGCCGGAATGCTCACACCAGACACAGAATATTCGCTGGTTCGAGACAACGACATAAAAATAGAAAGTGGTTATCTATCTTTAGAAGAACTGAATGCTATTTTCAAA                                                     >  1:911685/1‑190                                                                                                                                                                                                                                                    TTCAGGGAGAGGGTAGCTGACGAGATAGATCCCGTCGTTTCACCTGAAACTTATGAGAAACTTCCCGATGAGATCAAAAGGGTTGCCGGAATGCTCACACCAGACACAGAATATTCGCTGGTTCGAGACAACGACATAAAAATAGAAAGTGGTTATCTATCTTTAGAAGAACTGAATGCTATTTTCAAAACGTTGCCGTTCGATATTACCTTTGTGGATAAACACGGCAGAGTTCGTTTC  <  1:508894/240‑1                                                                                                                                                                                                                                                    TTCAGGGAGAGGGTAGCTGACGAGATAGATCCCGTCGTTTCACCTGAAACTTATGAGAAACTTCCCGATGAGATCAAAAGGGTTGCCGGAATGCTCACACCAGACACAGAATATTCGCTGGTTCGAGACAACGACATAAAAATAGAAAGTGGTTATCTATCTTTAGAAGAACTGAATGCTATTTTCAAAACGTTGCCGTTCGATATTACCTTTGTGGATAAACACGGCAGAGTTCGTTTC  <  1:1191547/240‑1                                                                                                                                                                                                                                                    TTCAGGGAGAGGGTAGCTGACGAGATAGATCCCGTCGTTTCACCTGAAACTTATGAGAAACTTCCCGATGAGATCAAAAGGGTTGCCGGAATGCTCACACCAGACACAGAATATTCGCTGGTTCGAGACAACGACATAAAAATAGAAAGTGGTTATCTATCTTTAGAAGAACTGAATGCTATTTTCAAAACGTTGCCGTTCGATATTACCTTTGTGGATAAACACGGCAGAGTTCGTT    >  1:1058927/1‑238                                                                                                                                                                                                                                                    TTCAGGGAGAGGGTAGCTGACGAGATAGATCCCGTCGTTTCACCTGAAACTTATGAGAAACTTCCCGATGAGATCAAAAGGGTTGCCGGAATGCTCACACCAGACACAGAATATTCGCTGGTTCGAGACAACGACATAAAAATAGAAAGTGGTTATCTATCTTTAGAAGAACTGAATGCTATTTTCAAAACGTTGCCGTTCGATATTACCTTTGTGGATAAACACGGCAGAGTTCGTT    >  1:1233854/1‑238                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CGACCCCAGCTACACCTCGCAAACCTGTCCCAGGTGCGGCCACGTCTCGAAAGAAAACAGACCAGACCATGGAGAGCGTTTTGTATGTCAGAACTGCGGCTACGAAGAACACGCAGACATAGTTGGTGCGATCAACATAGCCCTGAGAGTTCTTGTCAAAGACCAGCAGGGTAATCTTGAAAAGCTTTTAGGGGCCGATGTCAGTCGGCCTGATGCTCCCCGTTTGGGTTGAGCAAGCCCTCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_021214/1020679‑1020436 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcctTCAGGGAGAGGGTAGCTGACGAGATAGATCCCGTCGTTTCACCTGAAACTTATGAGAAACTTCCCGATGAGATCAAAAGGGTTGCCGGAATGCTCACACCAGACACAGAATATTCGCTGGTTCGAGACAACGACATAAAAATAGAAAGTGGTTATCTATCTTTAGAAGAACTGAATGCTATTTTCAAAACGTTGCCGTTCGATATTACCTTTGTGGATAAACACGGCAGAGTTCGTTTC  <  NC_021214/1020432‑1020194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.