New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_021214	486872 =	370 (1.100)	7 (0.020)	7/434	20.6	2.2%	coding (4667/5073 nt)	TMARI_RS02345	DNA‑directed RNA polymerase subunit beta'
	?	NC_021214	487340 =	278 (0.860)					coding (1834/1845 nt)	TMARI_RS02350	ABC transporter substrate‑binding protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACACCCACGCAGTTTCTTCGAACGCAGCCGCGCTGAGCCAGCCGGGGTAGTTAAGAGCCGCTTTCTTGAGCGACAGGAGTCTTCTCTTGTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCCTCTTCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_021214/487117‑486872 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcttctgCTTTCCAGAGCACGTAGTAGTCGTCGCCAGGTCTCATTGGATTGTGGTACCATCCTTTGACCCAGCTTCTCTGGACTCTCACACCGAGCGGCTGATAGAGAGGCATACCGAGGGCGTGCTTCATTGCGAACCTCTGGATCTCTTCGTAGAGTGCCTGTCTTTCTGCAGGATCGGTCTTCGCGATCGCTTCTTCTATGAGTTCGTCGAGACTTCTGCCACCAAGGTCGGGATGTGGTG  >  NC_021214/487340‑487576                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACACCCACGCAGGTTCTTCGAACGCAGCAGCGCTGAGCCAGCCGGGGTAGTTAAGAGCCGCTTTCTTGAGCGACAGGAGTCTTCTCTTGTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACACCTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCC                                                                                                                                                                                                                                                      <  2:939333/239‑1  CACCCACGCAGTTTCTTCGAACGCAGCCGCGCTGAGCCAGCCGGGGTAGTTAAGAGCCGCTTTCTTGAGCGACAGGAGTCTTCTCTTGTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCC                                                                                                                                                                                                                                                      >  1:220191/1‑238  CACCCACGCAGTTTCTTCGAACGCAGCCGCGCTGAGCCAGCCGGGGTAGGTAAGAGACGCTTTCTTGAGCGACAGGAGTCTTCTCTTGTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCTCGCCTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGTCTTTTTGCGCTAGTTCGACGAGTTCTCCC                                                                                                                                                                                                                                                      >  1:333697/1‑238     CCACGCAGTTTCTTCGAACGCAGCCGCGCTGAGCCAGCCGGGGTAGTTAAGAGCCGCTTTCTTGAGCGACAGGAGTCTTCTCTTGTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCCTCTT                                                                                                                                                                                                                                                  <  2:1290453/239‑1     CCACGCAGTTTCTTCGAACGCAGCCGCGCTGAGCCAGCCGGGGGAGTTAAGAGCCGCTTTCTTGAGCGACAGGAGTCTTCTCTTGTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCCATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGCGTTCTCCCTCT                                                                                                                                                                                                                                                   >  1:509002/1‑238     CCACGCAGTCTCTTCGAACGCAGCCGCCGTGTGCCCGCCGGGGTAGTTAAGGGCCGCTTTCTTGAGCGACGGGAGTCTTCTATTTTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCCTCTT                                                                                                                                                                                                                                                  <  1:14023/239‑1      CACGCAGTTTCTTCGAACGCAGCCGCGCTGAGCCAGCCGGGGTAGTTAAGAGCCGCTTTCTTGAGCGACAGGAGTCTTCTCTTGTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCCTCT                                                                                                                                                                                                                                                   >  2:678527/1‑237       ACGCAGTTTCTTCGAACGCAGCCGCGCTGAGCCAGCCGGGGTAGTTAAGAGCCGCTTTCTTGAGCGACAGGAGTCTTCTCTTGTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCCTCT                                                                                                                                                                                                                                                   >  1:1438440/1‑236       ACGCAGTTTCTTCGAACGCAGCCGCGCTGAGCCAGCCGGGGTAGTTAAGAGCCGCTTTCTTGAGCGACAGGAGTCTTCTCTTGTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCCTCT                                                                                                                                                                                                                                                   >  2:350733/1‑236       ACGCAGTTTCTTCGAACGCAGCCGCGCTGAGCCAGCCGGGGTAGTTAAGAGCCGCTTTCTTGAGCGACAGGAGTCTTCTCTTGTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTATTCACAAGTTTCTCGGTCACTTATTCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCCTCT                                                                                                                                                                                                                                                   >  1:31627/1‑236        CGCAGTTTCTTCGAACGCAGCCGCGCTGAGCCAGCCGGGGTAGTTAAGAGCCGCTTTCTTGAGCGACAGGAGTCTTCTCTTGTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCCTCT                                                                                                                                                                                                                                                   >  1:699075/1‑235        CGCAGTTTCTTCGAACGCAGCCGCGCTGAGCCAGCCGGGGTAGTTAAGAGCCGCTTTCTTGAGCGACAGGAGTCTTCTCTTGTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCCTCT                                                                                                                                                                                                                                                   >  1:715265/1‑235        CGCAGTTTCTTCGAACGCAGCCGCGCTGAGCCAGCCGGGGTAGTTAAGAGCCGCTTTCTTGAGCGACAGGAGTCTTCTCTTGTACTTGATAGGTTACTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATATCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCTCGAGTTCCACGCGTTCTCCCTCT                                                                                                                                                                                                                                                   >  1:557216/1‑235               TCTTCGAACGCAGCCGCGCTGAGCCAGCCGGGGTAGTTAAGAGCCGCTTTCTTGAGCGACAGGAGTCTTCTCTTGTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCTCGAGTTCTACGAGTTCTCCCTCTTCTtgttccg                                                                                                                                                                                                                                         >  1:212940/1‑231                                      CCAGCCGGGGTAGTTAAGAGCCGCTTTCTTGAGCGACAGGAGTCTTCTCTTGTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTCCTCCCTCTTCTGCTTTCCAGAGCACGTAGAAGACGGTGCCAG                                                                                                                                                                                                                 >  1:1236853/1‑239                                                                              AGTCTTCTCTTGTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCCTCTTCTGCTTTCCAGAGCACGTAGTAGTCGTCGCCAGGTCTCATTGGATTGTGGTACCATCCTTTGACCCAGCT                                                                                                                                                                            <  2:1048408/236‑1                                                                                                                        TACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCCTCTTCTGCTTTCCAGAGCACGTAGTAGTCGTCGCCAGGTCTCATTGGATTGTGGTACCATCCTTTGACCCAGCTTCTCTGGACTCTCACACCGAGCGGCTGATAGAGAGGCATACCGAG                                                                                                                               >  1:1438150/1‑239                                                                                                                                 atTTTATCTTTCTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCTGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCCTCTTCTGCTTTCCAGAGCACGTAGTAGTCGTCGCCAGGTCTCATTGGATTGTGGTACCATCCTTTGACCCAGCTTCTCTGGACTCTCACACCGAGCGGCTGATAGAGAGGCATACCGAGGGCGTGCTT                                                                                                                      <  1:740392/237‑1                                                                                                                                                    CGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCCTCTTCTGCTTTCCAGAGCACGTAGTAGTCGTCGCCAGGTCTCATTGGATTGTGGTACCATCCTTTGACCCAGCTTCTCTGGACTCTCACACCGAGCGGCTGATAGAGAGGCATACCGAGGGCGTGCTTCATTGCGAACCTCTGGATC                                                                                                   <  2:1438150/239‑1                                                                                                                                                                   TTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCCTCTTCTGCTTTCCAGAGCACGTAGTAGTCGTCGCCAGGTCTCATTGGATTGTGGTACCATCCTTTGACCCAGCTTCTCTGGACTCTCACACCGAGCGGCTGATAGAGAGGCATACCGAGGGCGTGCTTCATTGCGAACCTCTGGATCTCTTCGTAGAGTGCC                                                                                    <  2:1236853/239‑1                                                                                                                                                                                                                                    tttctgttgtCCTCTTCTGCTTTCCAGACCATGTAGTGTTCGTCGCCAGGTCTCATTGGATTGTCGTACCGTCCTTTGACCCAGCTTCTCTGGACTCTCACACCGAGCGGCTGATAGAGAGGCATACCGAGGGCGTGCTTCATTGCGAACCTCTGGATCTCTTCGTAGAGTGCCTGTCTTTCTGCAGGATCGGTCTTCGCGATCGCTTCTTCTATGAGTTCGTCGAGACTTCTGCCACC                   <  1:1373561/229‑1                                                                                                                                                                                                                                                TCTTCTGCTTTCCAGAGCACGTAGTAGTCGTCGCCAGGTCTCATTGGATTGTGGTAGCATCCTTTGACCCAGCTTCTCTGGACTCTCACACCGAGCGGCTGATAGAGAGGCATACCGAGGGCGTGCTTCATTGCGAACCTCTGGATCTCTTCGTAGAGTGCCTGTCTTTCTGCAGGATCGGTCTTCGCGATCGCTTCTTCTATGAGTTCGTCGAGACTTCTGCCACCAAGGTCGGGATG       <  1:468079/239‑1                                                                                                                                                                                                                                                 tTTCTTCTTTCCAGAGCACGTAGTAGTCGTCCCCAGGTCTCATTGGATTGTGGTACCATCCTTTGACCCAGCTTCTCTGGACTCTCACACCGAGCGGCTGATAGAGAGGCATACCGAGGGCGTGCTTCATTGCGAACCTCTGGATCTCTTCGTAGAGTGCCTGTCTTTCTGCAGGATCGGTCTTCGCGATCGCTTCTTCTATGAGTTCGTCGAGACTTCTGCCACCAAGGTCGGGATGT      <  1:1409901/238‑1                                                                                                                                                                                                                                                 CTTCTGCTTTCCAGAGCACGTAGTAGTCGTCGCCAGGTCTCATTGGATTGTGGTACCATCCTTTGACCCAGCTTCTCTGGACTCTCACACCGAGCGGCTGATAGAGAGGCATACCGAGGGCGTGCTTCATTGCGAACCTCTGGATCTCTTCGTAGAGTGCCTGTCTTTCTGCAGGATCGGTCTTCGCGATCGCTTCTTCTATGAGTTCGTCGAGACTTCTGCCACCAAGGTCGGGATGT      <  1:415926/239‑1                                                                                                                                                                                                                                                  TTCTGCTTTCCAGAGCACGTAGTAGTCGTCGCCAGGTCTCATTGGATTGTGGTACCATCCTTTGACCCAGCTTCTCTGGACTCTCACACCGAGCGGCTGATAGAGAGGCATACCGAGGGCGTGCTTCATTGCGAACCTCTGGATCTCTTCGTAGAGTGCCTGTCTTTCTGCAGGATCGGTCTTCGCGATCGCTTCTTCTATGAGTTCGTCGAGACTTCTGCCACCAAGGTCGGGATGTG     >  2:1066021/1‑239                                                                                                                                                                                                                                                  TTCTGCTTTCCAGAGCACGTAGTAGTCGTCGCCAGGTCTCATTGGATTGTGGTACCATCCTTTGACCCAGCTTCTCTGGACTCTCACACCGAGCGGCTGATAGAGAGGCATACCGAGGGCGTGCTTCATTGCGAACCTCTGGATCTCTTCGTAGAGTGCCTGTCTTTCTGCAGGATCGGTCTTCGCGATCGCTTCTTCTATGAGTTCGTCGAGACTTCTGCCACCAAGGTCGGGATGTG     >  2:996235/1‑239                                                                                                                                                                                                                                                     TGCTTTCCAGAGCACGTAGTAGTCGTCGCCAGGTCTCATTGGATTGTGGTACCATCCTTTGACCCAGCTTCTCTGGACTCTCACACCGAGCGGCTGATAGAGAGGCATACCGAGGGCGTGCTTCATTGCGAACCTCTGGATCTCTTCGTAGAGTGCCTGTCTTTCTGCAGGATCGGTCTTCGCGATCGCTTCTTCTATGAGTTCGTCGAGACTTCTGCCACCAAGGTCGGGATGTGGTG  <  2:1274109/239‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ACACCCACGCAGTTTCTTCGAACGCAGCCGCGCTGAGCCAGCCGGGGTAGTTAAGAGCCGCTTTCTTGAGCGACAGGAGTCTTCTCTTGTACTTGATAGGTTCCTTCGGGAGAATCTGGTACGTCACAACTTTATCTTTTTCGAAGACGTCGATCTCTTTTATTCCCGCTTCTATGATCTTCTTCAAAAGTTCCTCGGTCACTTCATCGCCTTTTTGCGCGAGTTCCACGAGTTCTCCCTCTTCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_021214/487117‑486872 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcttctgCTTTCCAGAGCACGTAGTAGTCGTCGCCAGGTCTCATTGGATTGTGGTACCATCCTTTGACCCAGCTTCTCTGGACTCTCACACCGAGCGGCTGATAGAGAGGCATACCGAGGGCGTGCTTCATTGCGAACCTCTGGATCTCTTCGTAGAGTGCCTGTCTTTCTGCAGGATCGGTCTTCGCGATCGCTTCTTCTATGAGTTCGTCGAGACTTCTGCCACCAAGGTCGGGATGTGGTG  >  NC_021214/487340‑487576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.