New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_021214 | = 256338 | 314 (0.950) | 30 (0.090) +ATA |
13/438 | 17.4 | 8.8% | coding (1191/1272 nt) | TMARI_RS01235 | glucose‑1‑phosphate adenylyltransferase |
? | NC_021214 | 256339 = | 315 (0.940) | coding (1192/1272 nt) | TMARI_RS01235 | glucose‑1‑phosphate adenylyltransferase | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
GGTAGAGGAACAGTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_021214/256102‑256338 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAGGTATTGGTGTAAGACCTGAAGACTTCAAATCGAAAACTTTAGAATCGGGAGATTATGTGATAGTCAGGGAGGAGTAGTGAGTGGATCTCTATTTTGTGAAGTTCAGGGTCACATCGAAGCTCACATCTGAAATCGTTCAGGGGTATTTCCTCGGCAAACTCAACCAGATCCCCGAGTACGATTTTTTTGTGATACCGGGTCGGTACGCCCGGAAATATTCTGTAGATTTGAA > NC_021214/256339‑256574 ||| GGTAGAGGAACAGTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTAT < 2:575652/239‑1 GGTAGAGGAACAGTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTAT < 2:1333843/239‑1 GGTAGAGGAACAGTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTAT < 2:1323656/239‑1 GGTAGAGGAACAGTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTAT < 1:935206/239‑1 GGTAGAGGAACAGTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTAT > 1:584698/1‑239 GGTAGAGGAACAGTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTAT < 1:453395/239‑1 GGTAGAGGAACAGTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTAT < 1:330862/239‑1 GGTAGAGGAACAGTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAAATGGGTTAT > 2:1413165/1‑239 GGTAGAGGAACAGTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGGGTACTCGGGTCTTCTGACAGGGGTTGGGAGGAGTTCTGTGATTCCCGCCGACATGGGGGTAGGACAGAACTGGGTTAT > 1:1252127/1‑239 GGTAGAGGAACAGTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGAAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGAACTGGGGATAGGAAAGAACTGTGTTAT > 1:87365/1‑239 GGTAGAGGAACAGTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGGGAAGAAGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGGTATTCCCGACGCCATGGTGATAGGAAGGAACTGTGTTAT > 1:1056327/1‑239 GGTAGAGGAACAGTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGGGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTAT < 1:1428020/239‑1 GGAACAGTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTATAATA < 2:58335/237‑1 GTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTATAATAGGTATTGG > 1:430290/1‑239 GTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTATAAT < 2:994586/230‑1 GTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTATAAT > 1:994586/1‑230 AAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTATAATAGGTATTGGTGTAA < 2:235156/238‑1 AACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTATAATAGGTATTGGTGTAAGACCTGAAGACTTCAAATCGAAA > 2:1427794/1‑238 ACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTATAATAGGTATTGGTGTAAGACCTGAAGACTTCAAATCGAA < 1:165913/236‑1 GGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTATAATAGGTATTGGTGTAAGACCTGAAGACTTCAAATCGAAAACTTTAGAATC > 1:1389813/1‑239 AGAGAACTGGTATCTGGAAAACGTGATAATAGCGGAAAATGGAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTATAATAGGTATTGGTGTAAGACCTGAAGACTTCAAATCGAAAACTTTAGATTC < 1:587294/237‑1 ATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTATAATAGGTATTGGTGTAAGACCTGAAGACTTCAAATCGAAAACTTTAGAATCGGGAGATTATGTG < 1:1427794/239‑1 TCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTATAATAGGTATTGGTGTAAGACCTGAAGACTTCAAATCGAAAACTTTAGAATCGGGAGATTATGTGA < 2:1293583/239‑1 AACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTAT < 2:199880/167‑1 AACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTAT > 1:199880/1‑167 ACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTATAATAGGTATTGGTGTAAGACCTGAAGACTTCAAATCGAAAACTTTAGAATCGGGAGATTATGTGATAGTCAGG < 1:1394772/239‑1 TAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTATAATAGGTATTGGTGTAAGACCTGAAGACTTCAAATCGAAAACTTTAGAATCGGGAGATTATGTGATAGTCAGGGAGGAG < 1:144750/239‑1 GCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTGCTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTATA < 2:136001/156‑1 GCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTGCTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTATA > 1:136001/1‑156 TGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTTATAATAGGTATTGGTGTAAGACCTGAAGACTTCAAATCGAAAACTTTAGAATCGGGAGATTATGTGATAGTCAGGGAGGAGTAGTGAGTGGATCTCTATTTTGTGAAGTTCAGGGTCACATCGAAGCTCACATCTGAAA < 2:1389813/239‑1 TAATAGGTATTGGTGTAAGACCTGAAGACTTCAAATCGAAAACTTTAGAATCGGGAGATTATGTGATAGTCAGGGAGGAGTAGTGAGTGGATCTCTATTTTGTGAAGTTCAGGGTCACATCGAAGCTCACATCTGAAATCGTTCAGGGGTATTTCCTCGGCAAACTCAACCAGATCCCCGAGTACGATTTTTTTGTGATACCGGGTCGGTACGCCCGGAAATATTCTGTAGATTTGAA > 2:1384413/1‑238 ||| GGTAGAGGAACAGTGGTGAAAAATTCAGTCATAATGACCAGAACTGAGATAGGAGAGAACTGTTATCTGGAAAACGTGATAATAGCGGAAAATGTAAAAATAGGAAGCAACGTCAGGATGGGAGTGGGTGAAGACGCTGAAAGCAAACTGGATCCAAAGGTGTACTCGGGTCTTCTGACAGTGGTTGGGATGAATTCTGTGATTCCCGACGACATGGTGATAGGAAAGAACTGTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_021214/256102‑256338 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAGGTATTGGTGTAAGACCTGAAGACTTCAAATCGAAAACTTTAGAATCGGGAGATTATGTGATAGTCAGGGAGGAGTAGTGAGTGGATCTCTATTTTGTGAAGTTCAGGGTCACATCGAAGCTCACATCTGAAATCGTTCAGGGGTATTTCCTCGGCAAACTCAACCAGATCCCCGAGTACGATTTTTTTGTGATACCGGGTCGGTACGCCCGGAAATATTCTGTAGATTTGAA > NC_021214/256339‑256574 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |