New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_021214	= 1519042	244 (0.750)	6 (0.020)	5/436	20.7	2.5%	coding (203/225 nt)	TMARI_RS07775	hypothetical protein
	?	NC_021214	= 1519047	233 (0.760)					coding (198/225 nt)	TMARI_RS07775	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGGAAGTAGTCACACTTCCATTTCATCGATTCTTCCGTGAGAAGCTCGACCTTGAATTTCTCACCTTTGAATTCAATTTCTTTACCCACAGATCTTTCCGAAGCGAAGAGCCTGAGCTCCGTGACGGGAACGTTGAATTCTTCGAGTACTTTTACCATCGTTCTTCCAACTTCTCCCGTGGCACCAACAACTCCTACTTTCACCTTCATCCCTCCTTGAATTAATAAAAAAAGCGTCTCTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_021214/1518799‑1519042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtctcttcgGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGAAATTGAATTCAAAGGTGAGAAATTCAAGGTCGAGCTTCTCACGGAAGAATCGATGAAATGGAAGTGTG  <  NC_021214/1519047‑1518810                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CAGGAAGTAGTCACACTTCCATTTCATCGATTCTTCCGTGAGAAGCTCGACCTTGAATTTCTCACCTTTGAATTCAATTTCTTTACCCACAGATCTTTCCGAAGCGAAGAGCCTGAGCTCCGTGACGGGAACGTTGAATTCTTCGAGTACTTTTACCATCGTTCTTCCAACTTCTCCCGTGGCACCAACAACTCCTACTTTCACCTTCATCCCTCCTTGAATTAATAAAAAAAGCGTC                                                                                                                                                                                                                                                      >  1:558874/1‑238    GAAGTAGTCACACTTCCATTTCATCGATTCTTCCGTGAGAAGCTCGACCTTGAATTTCTCACCTTTGAATTCAATTTCTTTACCCACAGATCTTTCCGAAGCGAAGAGCCTGAGCTCCGTGACGGGAACGTTGAATTCTTCGAGTACTTTTACCATCGTTCTTCCAACTTCTCCCGTGGCACCAACAACTCCTACTTTCACCTTCATCCCTCCTTGAATTAATAAAAAAAGCGTCTCT                                                                                                                                                                                                                                                   >  1:994597/1‑238      AGTAGTCACACTTCCATTTCATCGATTCTTCCGTGAGAAGCTCGACCTTGAATTTCTCACCTTTGAATTCAATTTCTTTACCCACAGATCTTTCCGAAGCGAAGAGCCTGAGCTCCGTGACGGGAACGTTGAATTCTTCGAGTACTTTTACCATCGTTCTTCCAACTTCTCCCGTGGCACCAACAACTCCTACTTTCACCTTCATCCCTCCTTGAATTAATAAAAAAAGCGTCTCTTCG                                                                                                                                                                                                                                                <  2:422490/239‑1      AGTAGTCACACTTCCATTTCATCGATTCTTCCGTGAGAAGCTCGACCTTGAATTTCTCACCTTTGAATTCAATTTCTTTACCCACAGATCTTTCCGAAGCGAAGAGCCTGAGCTCCGTGACGGGAACGTTGAATTCTTCGAGTACTTTTACCATCGTTCTTCCAACTTCTCCAGTGGCACCAACAACTCCTACTTTCACCTTCATCCCTCCTTGAATTAATAAAAAAAGCGTCTCTTCG                                                                                                                                                                                                                                                <  2:594212/239‑1                                                                                           AGATCTTTCCGAAGCGAAGAGCCTGAGCTCCGTGACGGGAACGTTGAATTCTTCGAGTACTTTTACCATCGTTCTTCCAACTTCTCCCTTGGCACCAACAACTCCTACTTTCACCTTCATCCCTCCTTGAATTAATAAAAAAAG                                                                                                                                                                                                                                                          <  2:587947/144‑1                                                                                           AGATCTTTCCGAAGCGAAGAGCCTGAGCTCCGTGACGGGAACGTTGAATTCTTCGAGTACTTTTACCATCGTTCTTCCAACTTCTCCCGTGGCACCAACAACTCCTACTTTCACCTTCATCCCTCCTTGAATTAATAAAAAAAG                                                                                                                                                                                                                                                          >  1:587947/1‑144                                                                                                                                                                                     GGCACCAACAACTCCTACTTTCACCTTCATCCCTCCTTGAATTAATAAAAAAAGCGTCTCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGGTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGACGAATTCAACGTTCCCGTCACGGAGCTCAGGCTATTCGCTTCGGAACGATCTGTGGGTAAAGCAATTG                                                                 >  1:718523/1‑239                                                                                                                                                                                                CTCCTACTTTCACCTTCATCCCTCCTTGAATTAATAAAAAAAGCGTCTCTTCGGGGAGCGAAGCGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGGAGGAGTTTTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGACATTGAATTCAAAGGT                                                      >  1:1129157/1‑239                                                                                                                                                                                                CTCCTACTTTCACCTTCATCCCTCCTTGAATTAATAAAAAAAGCGTCTCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAACGTACTCGAAGAATTCAACGTTCCCGTCACGGGGCTCAGGCTATTCGCTTCGGAAAGATCAGTGGGGAAAGAAATTGAATTCAAAGGg                                                      >  2:474880/1‑238                                                                                                                                                                                                       TTTCACCTTCATCCCTCCTTGAATTAATAAAAAAAGCGTCTCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAAC                                                                                                                                                       <  1:1183814/135‑1                                                                                                                                                                                                       TTTCACCTTCATCCCTCCTTGAATTAATAAAAAAAGCGTCTCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAAC                                                                                                                                                       >  2:1183814/1‑135                                                                                                                                                                                                           ACCTTCATCCCTCCTTGAATTAATAAAAAAAGCGTCTCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGAAATTGAATTCAAAGGTGAGAAATTCAA                                           >  1:53579/1‑239                                                                                                                                                                                                                                            GTCTCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGAAATTGAATTCAAAGGTGAGAAATTCAAGGTCGAGCTTCTCACGGAAGAATCGATGAAAT           <  1:786632/238‑1                                                                                                                                                                                                                                              aTCTTCGGGGAGCGAAGAGACGGTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTTCTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGAAATTGAATTCAAAGGTGAGAAATTCAAGGTCGAGCTTCTCACGGAAGAATCGATGAAATGGA        <  1:176190/238‑1                                                                                                                                                                                                                                              CTCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGAAATTGAATTCAAAGGTGAGAAATTCAAGGTCGAGCTTCTCACGGAAGAATCGATGAAATGGA        <  2:822608/239‑1                                                                                                                                                                                                                                              CTCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGAAATTGAATTCAAAGGTGAGAAATTCAAGGTCGAGCTTCTCACGGAAGAATCGATGAAATGGA        <  2:1009697/239‑1                                                                                                                                                                                                                                              CTCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGAAATTGAATTCAAAGGTGAGAAATTCAAGGTCGAGCTTCTCACGGAAGAATCGATGAAATGGA        <  2:421709/239‑1                                                                                                                                                                                                                                              CTCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGGTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGAAATTGAATTCAAAGGTGAGAAATTCAAGGTCGAGCTTCTCACGGAAGAATCGATGAAATGGA        <  2:119517/239‑1                                                                                                                                                                                                                                               TCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATc                                                                                                                                                                                                                  >  1:835996/1‑35                                                                                                                                                                                                                                               TCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGAAATTGAATTCAAAGGTGAGAAATTCAAGGTCGAGCTTCTCACGGAAGAATCGATGAAATGGAA       >  1:272853/1‑239                                                                                                                                                                                                                                               TCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGAAATTGAATTCAAAGGTGAGAAATTCAAGGTCGAGCTTCTCACGGAAGAATCGATGAAATGGAA       >  1:263441/1‑239                                                                                                                                                                                                                                               TCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGAAATTGAATTCAAAGGTGAGAAATTCAAGGTCGAGCTTCTCACGGAAGAATCGATGAAATGGAA       >  1:211544/1‑239                                                                                                                                                                                                                                               TCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGAAATTGAATTCAAAGGTGAGAAATTCAAGGTCGAG                                    >  2:1226040/1‑210                                                                                                                                                                                                                                               TCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGAAATTGAATTCAAAGGTGAGAAATTCAAGGTCGAG                                    <  1:1226040/210‑1                                                                                                                                                                                                                                               TCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGA                                                                                                                                                                   >  2:906296/1‑83                                                                                                                                                                                                                                               TCTTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGA                                                                                                                                                                   <  1:906296/83‑1                                                                                                                                                                                                                                                 TTCGGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGAAATTGAATTCAAAGGTGAGAAATTCAAGGTCGAGCTTCTCACGGAAGAATCGATGAAATGGAAGT     <  2:1361348/239‑1                                                                                                                                                                                                                                                    GGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGAAATTGAATTCAAAGGTGAGAAATTCAAGGTCGAGCTTCTCACGGAAGAATCGATGAAATGGAAGTGTG  <  1:531472/239‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CAGGAAGTAGTCACACTTCCATTTCATCGATTCTTCCGTGAGAAGCTCGACCTTGAATTTCTCACCTTTGAATTCAATTTCTTTACCCACAGATCTTTCCGAAGCGAAGAGCCTGAGCTCCGTGACGGGAACGTTGAATTCTTCGAGTACTTTTACCATCGTTCTTCCAACTTCTCCCGTGGCACCAACAACTCCTACTTTCACCTTCATCCCTCCTTGAATTAATAAAAAAAGCGTCTCTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_021214/1518799‑1519042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtctcttcgGGGAGCGAAGAGACGCTTTTTTTATTAATTCAAGGAGGGATGAAGGTGAAAGTAGGAGTTGTTGGTGCCACGGGAGAAGTTGGAAGAACGATGGTAAAAGTACTCGAAGAATTCAACGTTCCCGTCACGGAGCTCAGGCTCTTCGCTTCGGAAAGATCTGTGGGTAAAGAAATTGAATTCAAAGGTGAGAAATTCAAGGTCGAGCTTCTCACGGAAGAATCGATGAAATGGAAGTGTG  <  NC_021214/1519047‑1518810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.