New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_021214	= 146936	260 (0.930)	8 (0.030)	8/392	11.5	2.5%	coding (878/1770 nt)	TMARI_RS00680	bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase
	?	NC_021214	= 147166	372 (1.380)					coding (648/1770 nt)	TMARI_RS00680	bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGTCGGCACTCCCCACCTTGCTTGAGACAGATCGGTTACCGTGTTTTGCAACGGGAATACCAGCCGCAGCAACGACAAAGGCCGTTGTCGTTGAAATGTTGAACGTGCCAAAACCGTCTCCACCGGTTCCGCAGGTGTCGACCGTTCTTGGAGAAGGTGCTTTTATATGAATCGATTTTTCTCGCATGACGCTGGCCATTCCACCGAGTTCGTCTCCCGTTTCCTCTTTCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_021214/146703‑146936 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttcatccAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAAGAAACGGAAATTGACATCGTTTCCGCTCTCAAGAAACTCGTAGAATTTGAAGATCTCACTTTTGAAGAGAGCCGTCAGGTGATGAACTTCATCATGTCCGGGAATGCCACGGACGCTCAAATTGCAGGTTTCCTTGTGGCACTCAGGATGAAAG  <  NC_021214/147166‑146928                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CGTCGGCACTCCCCACCTTGCTTGAGACAGATCGGTTACCGTGTTTTGCAACGGGAATACCAGCCGCAGCAACGACAAAGGCCGTTGTCGTTGAAATGTTGAACGTGCCAAAACCGTCTCCACCGGTTCCGCAGGTGTCGACCGTTCTTGGAGAAGGTGCTTTTATATGAATCGATTTTTCTCGCATGACGCTGGCCATTCCACCGAGTTCGTCTCCCGTTTCCTCTTTCATCCAGAAT                                                                                                                                                                                                                                            >  1:597858/1‑239                         AGACAGATCGGTTACCGTGTTTTGCAACGGGAATACCAGCCGCAGCAACGACAAAGGCCGTTGTCGTTGAAATGTTGAACGTGCCAAAACCGTCTCCACCGGTTCCGCAGGTGTCGACCGTTCTTGGAGAAGGTGCTTTTATATGAATCGATTTTTCTCGCATGACGCTGGCCATTCCACCGAGTTCGTCTCCCGTTTCCTCTT                                                                                                                                                                                                                                                       >  1:1234350/1‑204                         AGACAGATCGGTTACCGTGTTTTGCAACGGGAATACCAGCCGCAGCAACGACAAAGGCCGTTGTCGTTGAAATGTTGAACGTGCCAAAACCGTCTCCACCGGTTCCGCAGGTGTCGACCGTTCTTGGAGAAGGTGCTTTTATATGAATCGATTTTTCTCGCATGACGCTGGCCATTCCACCGAGTTCGTCTCCCGTTTCCTCTT                                                                                                                                                                                                                                                       <  2:1234350/204‑1                                                                 CGCAGCAACGACAAAGGCCGTTGTCGTTGAAATGTTGAACGTGCCAAAACCGTCTCCACCGGTTCCGCAGGTGTCGACCGTTCTTGGAGAAGGTGCTTTTATATGAATCGATTTTTCTCGCATGACGCTGGCCATTCCACCGAGTTCGTCTCCCGTTTCCTCTTTCATCCAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAG                                                                                                                                                                              <  2:597858/237‑1                                                                                     TTGTCGTTGAAATGTTGAACGTGCCAAAACCGTCTCCACCGGTTCCGCAGGTGTCGACCGTTCTTGGAGAAGGTGCTTTTATATGAATCGATTTTTCTCGCATGACGCTGGCCATTCCACCGAGTTCGTCTCCCGTTTCCTCTTTCATCCAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAAGAAAC                                                                                                                                                       >  1:340354/1‑240                                                                                                    TGAACGTGCCAAAACCGTCTCCACCGGTTCCGCAGGTGTCGACCGTTCTTGGAGAAGGTGCTTTTATATGAATCGATTTTTCTCGCATGACGCTGGCCATTCCACCGAGTTCGTCTCCCGTTTCCTCTTTCATCCAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATA                                                                                                                                                                                                            >  2:467528/1‑172                                                                                                    TGAACGTGCCAAAACCGTCTCCACCGGTTCCGCAGGTGTCGACCGTTCTTGGAGAAGGTGCTTTTATATGAATCGATTTTTCTCGCATGACGCTGGCCATTCCACCGAGTTCGTCTCCCGTTTCCTCTTTCATCCAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATA                                                                                                                                                                                                            <  1:467528/172‑1                                                                                                                            CGGTTCCGCAGGTGTCGACCGTTCTTGGAGAAGGTGCTTTTATATGAATCGATTTTTCTCGCATGACGCTGGCCATTCCACCGAGTTCGTCTCCCGTTTCCTCTTTCATCCTGA‑‑‑‑GTG‑‑‑‑CC‑‑ACAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAAGAAACGGAAATTGACATCGTTTCCGCTCTCAAGAAACTCGTAGAATTTGAAGA                                                                                                       >  2:883258/1‑239                                                                                                                             GGTTCCGCAGGTGTCGACCGTTCTTGGAGAAGGTGCTTTTATATGAATCTATTTTTCTCGCATGACGCTGGCCATTCCACCGAGTTCGTCTCCCGTTTCCTCTTTCATCCAGAATCCGTGATGACCGAAGAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAAGAAACGGAAATTGACATCGTTTCCGCTCTCAAGAAACTCGTAGAA                                                                                                               <  2:340354/240‑1                                                                                                                                                                                            GACGCTGGCCATTCCACCGAGTTCGTCTCCCGTTTCCTCTTTCATCCTGA‑‑‑‑GTG‑‑‑‑CC‑‑ACAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAAGAAACGGAAATTGACATCGTTTCCGCTCTCAAGAAACTCGTAGAATTTGAAGATCTCACTTTTGAAGAGAGCCGTCAGGTGATGAACTTCATCATGTCCGGGAATGCCACGGACGCTC                                      <  1:883258/240‑1                                                                                                                                                                                                                                    TTCATCCAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAAGAAACGGAAATTGACATCGTTTCCGCTCTCAAGAAACTCGTAGAATTTGAAGATCTCACTTTTGAAGAGAGCCGTCAGGTGATGAACTTCATCATGTCCGGGAATGCCACGGACGCTCAAATTGCAGGTTTCCTTGTGGCACTCAGG         <  1:683835/239‑1                                                                                                                                                                                                                                     TCATCCAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAAGAAACGGAAATTGACATCGTTTCCGCTCTCAAGAAACTCGTAGAATTTGAAGATCTCACTTTTGAAGAGAGCCGTCAGGTGATGAACTTCATCATGTCCGGGAATGCCACGGACGCTCAAATTGCAGGTTTCCTTGTGGCACTC            <  1:539053/235‑1                                                                                                                                                                                                                                     TCATCCAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAAGAAACGGAAATTGACATCGTTTCCGCTCTCAAGAAACTCGTAGAATTTGAAGATCTCACTTTTGAAGAGAGCCGTCAGGTGATGAACTTCATCATGTCCGGGAATGCCACGGACGCTCAAATTGCAGGTTTCCTTGTGGCACTC            >  2:539053/1‑235                                                                                                                                                                                                                                       ATCCAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAANAANCGNAAATTGACATCGTTTCCGCTCTCAAGAAACTCGTAGAATTTGAAGATCTCACTTTTGAAGAGAGCCGTCAGGCGATGAACTTCATCATGTCCGGGAATGCCACGGACGCTCAAATTGCAGCTTTCCTTGTGGCAATCAGGATGc     >  2:47688/1‑239                                                                                                                                                                                                                                       ATCCAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAAGAAACGGAAATTGACATCGTTTCCGCTCTCAAGAAACTCGTAGAATTTGAAGATCTCACTTTTGAAGAGAGCCGTCAGGTGATGAACTTCATCATGTCCGGGA                                                     >  2:1227234/1‑192                                                                                                                                                                                                                                       ATCCAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAAGAAACGGAAATTGACATCGTTTCCGCTCTCAAGAAACTCGTAGAATTTGAAGATCTCACTTTTGAAGAGAGCCGTCAGGTGATGAACTTCATCATGTCCGGGA                                                     >  2:1273219/1‑192                                                                                                                                                                                                                                       ATCCAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAAGAAACGGAAATTGACATCGTTTCCGCTCTCAAGAAACTCGTAGAATTTGAAGATCTCACTTTTGAAGAGAGCCGTCAGGTGATGAACTTCATCATGTCCGGGA                                                     <  1:1273219/192‑1                                                                                                                                                                                                                                       ATCCAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAAGAAACGGAAATTGACATCGTTTCCGCTCTCAAGAAACTCGTAGAATTTGAAGATCTCACTTTTGAAGAGAGCCGTCAGGTGATGAACTTCATCATGTCCGGGA                                                     <  1:1227234/192‑1                                                                                                                                                                                                                                         CCAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAAGAAACGGAAATTGACATCGTTTCCGCTCTCAAGAAACTCGTAGAATTTGAAGATCTCACTTTTGAAGAGAGCCGTCAGGTGATGAACTTCATCATGTCCGGGAATGCCACGGACGCTCAAATTGCAGGTTTCCTTGTGGCACTCAGGATGAAA   <  1:246986/240‑1                                                                                                                                                                                                                                          CAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAAGAAACGGAAATTGACATCGTTTCCGCTCTCAAGAAACTCGTAGAATTTGAAGATCTCACTTTTGAAGAGAGCCGTCAGGTGATGAACTTCATCATGTCCGGGAATGCCACGGACGCTCAAATTGCAGGTTTCCTTGTGGCACTCAGGATGAAAG  <  1:47688/240‑1                                                                                                                                                                                                                                          CAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAAGAAACGGAAATTGACATCGTTTCCGCTCTCAAGAAACTCGTAGAATTTGAAGATCTCACTTTTGAAGAGAGCCGTCAGGTGATGAACTTCATCATGTCCGGGAATGCCACGGACGCTCAAATTGCAGGTTTCCTTGTGGCACTCAGGATGAAAG  <  2:844936/240‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CGTCGGCACTCCCCACCTTGCTTGAGACAGATCGGTTACCGTGTTTTGCAACGGGAATACCAGCCGCAGCAACGACAAAGGCCGTTGTCGTTGAAATGTTGAACGTGCCAAAACCGTCTCCACCGGTTCCGCAGGTGTCGACCGTTCTTGGAGAAGGTGCTTTTATATGAATCGATTTTTCTCGCATGACGCTGGCCATTCCACCGAGTTCGTCTCCCGTTTCCTCTTTCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_021214/146703‑146936 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttcatccAGAATCCGTGCTGACCGAAGAAGGAAAGAGAATCATAAAGAACTTCCTGAACATCCAGGATATTCAGGTAAAGAAAGTTTCCGAAGAAACGGAAATTGACATCGTTTCCGCTCTCAAGAAACTCGTAGAATTTGAAGATCTCACTTTTGAAGAGAGCCGTCAGGTGATGAACTTCATCATGTCCGGGAATGCCACGGACGCTCAAATTGCAGGTTTCCTTGTGGCACTCAGGATGAAAG  <  NC_021214/147166‑146928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.