New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_021214	334659 =	376 (1.340)	10 (0.040)	6/398	12.5	2.8%	coding (1122/2019 nt)	TMARI_RS01585	beta‑galactosidase
	?	NC_021214	334750 =	336 (1.230)					coding (1213/2019 nt)	TMARI_RS01585	beta‑galactosidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTCAAAATTCTGATCTTTCCCAACAACATCGACTCCAAGGCCGGTTTTCACAAGTGCCTTGAAGTACTTCTGCACTTCGTTTAAATACCTGAAGTCTACGCTAGGTGTCAGGGTGTCTTCCATCGCCCACCAGCTTTCCCAATCGAACAGAAGGGCTGTCTGTGAGACAACCCTTGCGTCGAGAATATCCGATAAGGACTTTATCTCTTCTCCCACTCTTTTCACTTCCTGAAAGACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_021214/334900‑334659 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccttCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGCACTTGTGAAAACCGGCCTTGGAGTCGATGTTGTTGGGAAAGATCAGAATTTTGAAAGGTACAGAGTCCTCGTTGCTCCGGTGCTTTATATGGTGGGCAAAGAACTTGCACAGAAGCTGAAAGATTACGTCTCGAACGGAGGAAT  >  NC_021214/334750‑334988                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTTCAAAATTCTGATCTTTCCCAACAACATCGACTCCAAGGCCGGTTTTCACAAGTGCCTTGAAGTACTTCTGCACTTCGTTTAAATACCTGAAGTCTACGCTAGGTGTCAGGGTGTCTTCCATCGCCCACCAGCTTTCCCAATCGAACAGAAGGGCTGTCTGTGAGACAACCCTTGCGTCGAGAATATCCGATAAGGACTTTATCTCTTCTCCCACTCTTTTCACTTCCTGAAAGAC                                                                                                                                                                                                                                                     >  1:1041477/1‑238  TTCAAAATTCTGATCTTTCCCAACAACATCGACTCCAAGGCCGGTTTTCACAAGTGCCTTGAAGTACTTCTGCACTTCGTTTAAATACCTGAAGTCTACGCTAGGTGTCAGGGTGTCTTCCATCGCCCACCAGCTTTCCCAATCGAACAGAAGGGCTGTCTGTGAGACAACCCTTGCGTCGAGAATATCCGATAAGGACTTTATCTCTTCTCCCACTCTTTTCACTTCCTGCAAGACCCT                                                                                                                                                                                                                                                  >  2:374368/1‑240  TTCAAAATTCTGATCTTTCCCAACAACATCGACTCCAAGGCCGGTTTTCACAAGTGCCTTGAAGTACTTCTGCACTTCGTTTAAATACCTGAAGTCTACGCTAGGTGTCAGGGTGTCTTCCATCGCCCACCAGCTTTCCCAATCGAACAGAAGGGCTGTCTGTGAGACAACCCTTGCGTCGAGAATATCCGATAAGGACTTTATCTCTTCTCCCACTCTTTTCACTTCCTGAAAGACC                                                                                                                                                                                                                                                    >  2:1052436/1‑238   TCAAAATTCTGATCTTTCCCAACAACATCGACTCCAAGGCCGGTTTTCACAAGTGCCTTGAAGTACTTCTGCACTTCGTTTAAATACCTGAAGTCTACGCTAGGTGTCAGGGTGTCTTCCATCGCCCACCAGCTTTCCCAATCGAACAGAAGGGCTGTCTGTGAGACAACCCTTGCGTCGAGAATATCCGATAAGGACTTTATCTCTTCTCCCACTCTTTTCACTTCCTGAAAGACCCTT                                                                                                                                                                                                                                                 <  2:167533/240‑1                                                                                                                                                                         CAACCCTTGCGTCGAGAATATCCGATAAGGACTTTATCTCTTCTCCCACTCTTTTCACTTCCTGAAAGACCCTTCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGCACTTGTGAAAACCGGCCTTGGAGTCGATGTTGTTGGGAAAGATCAGAATTTTGAAAGGTACAGAGTCCTCG                                                                           >  1:244496/1‑240                                                                                                                                                                         CAACCCTTGCGTCGAGAATATCCGATAAGGACTTTATCTCTTCTCCCACTCTTTTCACTTCCTGAAAGACCCTTCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGCAC                                                                                                                                                <  1:838781/171‑1                                                                                                                                                                         CAACCCTTGCGTCGAGAATATCCGATAAGGACTTTATCTCTTCTCCCACTCTTTTCACTTCCTGAAAGACCCTTCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGCAC                                                                                                                                                >  2:744417/1‑171                                                                                                                                                                         CAACCCTTGCGTCGAGAATATCCGATAAGGACTTTATCTCTTCTCCCACTCTTTTCACTTCCTGAAAGACCCTTCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGCAC                                                                                                                                                >  2:838781/1‑171                                                                                                                                                                         CAACCCTTGCGTCGAGAATATCCGATAAGGACTTTATCTCTTCTCCCACTCTTTTCACTTCCTGAAAGACCCTTCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGCAC                                                                                                                                                <  1:744417/171‑1                                                                                                                                                                         CAACCCTTGCGTCGAGAATATCCGATAAGGACTTTATCTCTTCTCCCACTCTTTTCACTTCCTGAAAGACCCTTCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGAACTTGTGAAAACCGGCCTTGGAGTCGATGTTGTTGGGAAAGATCAGAATTTTGAAAGGTACAGAGTCCTCG                                                                           >  2:331205/1‑240                                                                                                                                                                                     CGAGAATATCCGATAAGGACTTTATCTCTTCTCCCACTCTTTTCACTTCCTGAAAGACCCTTCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCT                                                                                                                                                                                                 >  1:930087/1‑110                                                                                                                                                                                     CGAGAATATCCGATAAGGACTTTATCTCTTCTCCCACTCTTTTCACTTCCTGAAAGACCCTTCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCT                                                                                                                                                                                                 <  2:930087/110‑1                                                                                                                                                                                                GATAAGGACTTTATCTCTTCTCCCACTCTTTTCACTTCCTGAAAGACCCTTCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGAACTTGTGAAAACCGGCCTTGGAGTCGATGTTGTTGGGAAAGATCAGAATTTTGAAAGGTACAGAGTCCTCGTTGCTCCGGTGCTTTATATGGTG                                                    <  1:331205/240‑1                                                                                                                                                                                                                                          AAGACCCTTCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAAGCACTTGTGAAAACCGGCCTTGGAGTCGATGTTGTTGGGAAAGATCAGAATTTTGAAAGGTACAGAGTCCTCGTTGCTTCGGTGCTTTATATGGTGGGCAAAGAACTTGCTCAGAAGCTGAAAGATTACGTCTCGAA           <  2:244496/239‑1                                                                                                                                                                                                                                               CCTTCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGCACTTGTGAAAACCGGCCTTGGAGTCGATGTTGTTGGGAAAGATCAGAATTTTGAAAGGTACAGAGTCCTCGTTGCTCCGGTGCTTTATATGGTGGGCAAAGAACTTGCACAGAAGCTGAAAGATTACGTCTCGAACGGAGG     <  1:1068145/240‑1                                                                                                                                                                                                                                               CCTTCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGCACTTGTGAAAACCGGCCTTGGAGTCGATGTTGTTGGGAAAGATCAGAATTTTGAAAGGTACAGAGTCCTCGTTGCTCCGGTGCTTTATATGGTGGGCAAAGAACTTGCACAGAAGCTGAAAGATTACGTCTCGAAC          <  1:384773/235‑1                                                                                                                                                                                                                                                 TTCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGCACTTGTGAAAACCGGCCTTGGAGTCGATGTTGTTGGGAAAGATCAGAATTTTGAAAGGTACAGAGTCCTCGTTGCTCCGGTGCTTTATATGGTGGGCAAAGAACTTGCACAGAAGCTG                            >  2:134766/1‑215                                                                                                                                                                                                                                                 TTCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGCACTTGTGAAAACCGGCCTTGGAGTCGATGTTGTTGGGAAAGATCAGAATTTTGAAAGGTACAGAGTCCTCGTTGCTCCGGTGCTTTATATGGTGGGCAAAGAACTTGCACAGAAGCTG                            <  1:134766/215‑1                                                                                                                                                                                                                                                 TTCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGCACTTGTGAAAACCGGCCTTGGAGTCGATGTTGTTGGGAAAGATCAGAATTTTGAAAGGTACAGAGTCCTCGTTGCTCCGGTG                                                                <  2:974123/179‑1                                                                                                                                                                                                                                                 TTCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGCACTTGTGAAAACCGGCCTTGGAGTCGATGTTGTTGGGAAAGATCAGAATTTTGAAAGGTACAGAGTCCTCGTTGCTCCGGTG                                                                >  1:974123/1‑179                                                                                                                                                                                                                                                  TCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGCACTTGTGAAAACCGGCCTTGGAGTCGATGTTGTTGGGAAAGATCAGAATTTTGAAAGGTACAGAGTCCTCGTTGCTCCGGTGCTTTATATGGTGGGCAAAGAACTTGCACAGAAGCTGAAAGATTACGTCTCGAACGGAGGAA   >  1:612604/1‑239                                                                                                                                                                                                                                                  TCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGCACTTGTGAAAACCGGCCTTGGAGTCGATGTTGTTGGGAAAGATCAGAATTTTGAAAGGTACAGAGTCCTCGTTGCTCCGGTGCTTTATATGGTGGGCAAAGAACTTGCACAGAAGCTGAAAGATTACGTCTCGAACGGAGGAA   >  1:383995/1‑239                                                                                                                                                                                                                                                  TCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGAGCAGAAGTACTTCAAGGCACTTGTGAAAACCGGCCTTGGAGTCGATGTTGTTGGGAAAGATCAGAATTTTGAAAGGTACAGAGTCCTCGTTGCTCCGGTGCTTTATATGTTGGGCAAAGAATTTGCACAGAAGCTGAAAGATTACGACTCGAACGGGGGAAT  >  2:743373/1‑240                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTTCAAAATTCTGATCTTTCCCAACAACATCGACTCCAAGGCCGGTTTTCACAAGTGCCTTGAAGTACTTCTGCACTTCGTTTAAATACCTGAAGTCTACGCTAGGTGTCAGGGTGTCTTCCATCGCCCACCAGCTTTCCCAATCGAACAGAAGGGCTGTCTGTGAGACAACCCTTGCGTCGAGAATATCCGATAAGGACTTTATCTCTTCTCCCACTCTTTTCACTTCCTGAAAGACCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_021214/334900‑334659 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccttCTGTTCGATTGGGAAAGCTGGTGGGCGATGGAAGACACCCTGACACCTAGCGTAGACTTCAGGTATTTAAACGAAGTGCAGAAGTACTTCAAGGCACTTGTGAAAACCGGCCTTGGAGTCGATGTTGTTGGGAAAGATCAGAATTTTGAAAGGTACAGAGTCCTCGTTGCTCCGGTGCTTTATATGGTGGGCAAAGAACTTGCACAGAAGCTGAAAGATTACGTCTCGAACGGAGGAAT  >  NC_021214/334750‑334988

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.