| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_021214 | = 453135 | 405 (1.440) | 6 (0.020) | 6/392 | 12.4 | 1.6% | coding (496/1272 nt) | TMARI_RS02190 | carbohydrate ABC transporter substrate‑binding protein |
| ? | NC_021214 | = 453205 | 338 (1.250) | coding (426/1272 nt) | TMARI_RS02190 | carbohydrate ABC transporter substrate‑binding protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAATAGATTAACAAAATCCTCAAGAGCTTTGATTGCTTTTGGATCCTTATCGAGAACAAGATTCAGATTCTCATCCAGCACTTTGGCTCCTCTGATTGCAAGATAGTTCGCTATTCTTTCAGCAGAATACTGCATGGACATAGCGTATGGCAGGTTATTTGCCTCTTTCACCTTTCTCAAAACTTCCACGAACTCTTCCCATGTCCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_021214/452926‑453135‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccagggTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTGCTGAAAGAATAGCGAACTATCTTGCAATCAGAGGAGCCAAAGTGCTGGATGAGAATCTGAATCTTGTTCTCGATAAGGA < NC_021214/453205‑452969 GAATAGATTAACAAAATCCTCAAGAGCTTTGATTGCTTTTGGATCCTTATCGAGAACAAGATTCAGATTCTCATCCAGCACTTTGGCTCCTCTGATTGCAAGATAGTTCGCTATTCTTTCAGCAGAATACTGCATGGACATAGCGTATGGCAGGTTATTTGCCTCTTTCACCTTTCTCAAAACTTCCACGAACTCTTCCCATGTCCAGGGTCTATGGGTCAATGTGGATTACTTCTAAAA > 2:1060650/1‑240 TGCTTTTGGATCCTTATCGAGAACAAGATTCAGATTCTCATCCAGCACTTTGGCTCCTCTGATTGCAAGATAGTTCGCTATTCTTTCAGCAGAATACTGCATGGACATAGCGTATGGCAGGTTATTTGCCTCTTTCACCTTTCTCAAAACTTCCACGAACTCTTCCCATGTCCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAG < 1:1060650/240‑1 CCTTATCGAGAACAAGATTCAGATTCTCATCCAGCACTTTGGCTCCTCTGATTGCAAGATAGTTCGCTATTCTTTCAGCAGAATACTGCATGGACATAGCGTATGGCAGGTTATTTGCCTCTTTCACCTTTCTCAAAACTTCCACGAACTCTTCCCATGTCCAGG > 1:1011885/1‑165 CCTTATCGAGAACAAGATTCAGATTCTCATCCAGCACTTTGGCTCCTCTGATTGCAAGATAGTTCGCTATTCTTTCAGCAGAATACTGCATGGACATAGCGTATGGCAGGTTATTTGCCTCTTTCACCTTTCTCAAAACTTCCACGAACTCTTCCCATGTCCAGG < 2:1011885/165‑1 CTCATCCAGCACTTTGGCTCCTCTGATTGCAAGATAGTTCGCTATTCTTTCAGCAGAATACTGCATGGACATAGCGTATGGCAGGTTATTTGCCTCTTTCACCTTTCTCAAAACTTCCACGAACTCTTCCCATGTCCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGT < 2:325019/178‑1 CTCATCCAGCACTTTGGCTCCTCTGATTGCAAGATAGTTCGCTATTCTTTCAGCAGAATACTGCATGGACATAGCGTATGGCAGGTTATTTGCCTCTTTCACCTTTCTCAAAACTTCCACGAACTCTTCCCATGTCCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGT > 1:325019/1‑178 AGCGTATGGCAGGTTATTTGCCTCTTTCACCTTTCTCAAAACTTCCACGAACTCTTCCCATGTCCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGG < 1:1002365/105‑1 AGCGTATGGCAGGTTATTTGCCTCTTTCACCTTTCTCAAAACTTCCACGAACTCTTCCCATGTCCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGG > 2:1002365/1‑105 GTCCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTGCTGAAAGAATAGCGAACTACCTTGCAATCAGAGGAGCCAAAGTGCTGGATGAGAATCTGAATCTTGTTCTCGAT > 1:457448/1‑240 GTCCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGAGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTGCTGAAAGAATAGCGAACTATCTTGCAATCAGAGGAGCAAAAGTGCGGGATGAGAATGTGAATCTTGTTCTCGAT > 2:1228582/1‑240 GTCCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGA > 2:998896/1‑114 GTCCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGA > 2:262585/1‑114 GTCCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGA < 1:998896/114‑1 GTCCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGA < 1:262585/114‑1 GTCCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGATGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTGCTGAAAGAATAGCGAACTATCTTGCAATAAGAGGAGCCAAAGTGCTGGATGAGAATCTGAATCTTGTTCTCGAT > 2:806657/1‑240 TCCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTGCTGAAAGAATAGCGAACTATCTTGCAATCAGAGGAGCCAAAGTGCTGGATGAGAATCTGAATCTTGTTCTCGATA > 2:1265665/1‑240 CCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTGCTGAAAGAATAGCGAACTATCTTGCAATCAGAGGAGCCAAAGTGCTGGATGAGAATCTGAATCTTGTTCTCGATAA > 2:931831/1‑240 CCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTGCTGAAAGAATAGCGAACTATCTTGCAATCAGAGGAGCCAAAGTGCTGGATGAGAATCTGAATCTTGTTCTCGATA < 2:532204/239‑1 CCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTGCTGAAAGAATAGCGAACTATCTTGCAATCAGAGGAGCCAAAGTGCTGGATGAGAATCTGAATCTTGTTCTCGATA < 1:386357/239‑1 CCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTG > 1:90792/1‑164 CCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTG < 2:90792/164‑1 CCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCAT > 2:1143894/1‑140 CCAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCAT < 1:1143894/140‑1 CAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTGCTGAAAGAATAGCGAACTATCTTGCAATCAGAGGAGCCAAAGTGCTGGATGAGAATCTGAATCTTGTTCTCGATAAG < 1:436385/240‑1 CAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTGCTGAAAGAATAGCGAACTATCTTGCAATCAGAGGAGCCAAAGTGCTGGATGAGAATCTGAATCTTGTTCTCGATAAG < 1:491248/240‑1 CAGGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTGCTGAAAGAATAGCGAACTATCTTGCAATCAGAGGAGCCAAAGTGCTGGATGAGAATCTGAATCTTGTTCTCGATAAG < 1:806657/240‑1 GGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTGCTGAAAGAATAGCGAACTATCTTGCAATCAGAGGAGCCAAAGTGCTGGATGAGAATCTGAATCTTGTTC > 2:755812/1‑230 GGGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTGCTGAAAGAATAGCGAACTATCTTGCAATCAGAGGAGCCAAAGTGCTGGATGAGAATCTGAATCTTGTTC < 1:755812/230‑1 GGTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTGCTGAAAGAATAGCGAACTATCTTGCAATCAGAGGAGCCAAAGTGCTGGATGAGAATCTGAATCTTGTTCTCGATAAGGA > 1:361786/1‑239 GTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTGCTGAAAGAATAGCGAACTATCTTGCAATCAGAGGAGCCAAAGTGCTGGATGAGAATCTGAATCTTGTTCTCGATAAGG < 1:187302/237‑1 GAATAGATTAACAAAATCCTCAAGAGCTTTGATTGCTTTTGGATCCTTATCGAGAACAAGATTCAGATTCTCATCCAGCACTTTGGCTCCTCTGATTGCAAGATAGTTCGCTATTCTTTCAGCAGAATACTGCATGGACATAGCGTATGGCAGGTTATTTGCCTCTTTCACCTTTCTCAAAACTTCCACGAACTCTTCCCATGTCCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_021214/452926‑453135‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccagggTCTATGGGTCAATGTGGATTACTTCGAAAAAGCTGGTATACCTTTCCCACCACTTGGTGGAAGAGAAGAGCCCTGGACATGGGAAGAGTTCGTGGAAGTTTTGAGAAAGGTGAAAGAGGCAAATAACCTGCCATACGCTATGTCCATGCAGTATTCTGCTGAAAGAATAGCGAACTATCTTGCAATCAGAGGAGCCAAAGTGCTGGATGAGAATCTGAATCTTGTTCTCGATAAGGA < NC_021214/453205‑452969 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |