New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_021214	= 697153	229 (0.820)	12 (0.040)	8/394	11.5	5.3%	coding (433/615 nt)	TMARI_RS03420	hypothetical protein
	?	NC_021214	= 697210	207 (0.760)					coding (376/615 nt)	TMARI_RS03420	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATGTTCCCAGAACTGAGAGACGACGAGATAAAAGAAGTCGTCGACACGATAGCGCTCTTTCTTTAGGTGAGATCTTTCACCACCTTGAGTGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_021214/696908‑697153 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggacaTCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGGTGATAGAGGCTTTCAATCCTGACTGTCCCGTCTCGGTGGACGACGTTCAGAAGGTCTTTCTGGCTGGAAGAGAGTTCGTACTCGTCCACCTCACGATCCAGGACGAAGATCGAGAAAGAACAGAAGTGGGGGTTGCACCCCTCGAAGGAGACTTTTTGAAATCAGTGGCCACGGCTACACTCAAGGTGGTGAAAGATCTCACCT  <  NC_021214/697210‑696973                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CATGTTCCCAGAACTGAGAGACGACGAGATAAAAGAAGTCGTCGACACGATAGCGCTCTTTCTTTAGGTGAGATCTTTCACCACCTTGAGTGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGAC                                                                                                                                                                                                                                                      <  1:1299137/240‑1      TCCCAGAACTGAGAGACGACGAGATAAAAGAAGTCGTCGACACGATAGCGCTCTTTCTTTAGGTGAGATCTTTCACCACCTTGAGTGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGA                                                                                                                                                                                                                                                  <  2:166981/239‑1      TCCCAGAACTGAGAGACGACGAGATAAAAGAAGTCGTCGACACGATAGCGCTCTTTCTTTAGGTGAGATCTTTCACCACCTTGAGTGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGA                                                                                                                                                                                                                                                  <  1:150567/239‑1       CCCAGAACTGAGAGACGACGAGATAAAAGAAGTCGTCGACACGATAGCGCTCTTTCTTTAGGTGAGATCTTTCACCACCTTGAGTGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGACA                                                                                                                                                                                                                                                <  1:1132754/240‑1                GAGAGACGACGAGATAAAAGAAGTCGTCGACACGATAGCGCTCTTTCTTTAGGTGAGATCTTTCACCACCTTGAGTGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGcaaggcaggatt                                                                                                                                                                                                                                       >  2:1086458/1‑228                     ACGACGAGATAAAAGAAGTCGTCGACACGATAGCGCTCTTTCTTTAGGTGAGATCTTTCACCACCTTGAGTGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCAAGCAAGAAAGACCTTCTGACCGTCGTCCACCGAGACGGGACATGCCCCAAACTTCC                                                                                                                                                                                                                                  >  2:693457/1‑240                                        cagCGACACGATAGCGCTCTTTCTTTAGGGGAGATCTTTCGCCACCTTGGGTGTAGCCGTTGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCCCTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGACATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCG                                                                                                                                                                                                               <  2:1181720/237‑1                                         GTCGACACGATAGCGCTCTTTCTTTAGGTGAGATCTTTCACCCCCTTGAGTGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGACATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGG                                                                                                                                                                                                              <  1:693457/240‑1                                                     GCGCTCTTTCTTTAGGTGAGATCTTTCACCACCTTGAGTGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGACATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGGTGATAGAG                                                                                                                                                                                                      >  1:1181720/1‑236                                                       GCTCTTTCTTTAGGTGAGATCTTTCACCACCTTGAGTGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGA                                                                                                                                                                                                                                                  <  2:708794/190‑1                                                       GCTCTTTCTTTAGGTGAGATCTTTCACCACCTTGAGTGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGA                                                                                                                                                                                                                                                  >  1:708794/1‑190                                                                                     CTTGAGTGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGA                                                                                                                                                                                                                                                  <  1:1228333/160‑1                                                                                     CTTGAGTGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGA                                                                                                                                                                                                                                                  >  2:1228333/1‑160                                                                                           TGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGACATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGG                                                                                                                                                                                                              <  1:218078/190‑1                                                                                           TGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGACATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGG                                                                                                                                                                                                              >  2:218078/1‑190                                                                                           TGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGACA                                                                                                                                                                                                                                                <  1:1309072/156‑1                                                                                           TGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGACA                                                                                                                                                                                                                                                >  2:1309072/1‑156                                                                                                         CTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGACATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGG                                                                                                                                                                                                              >  2:927768/1‑176                                                                                                         CTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGACATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGG                                                                                                                                                                                                              <  1:927768/176‑1                                                                                                                     AGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGACATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGG                                                                                                                                                                                                              <  1:672508/164‑1                                                                                                                     AGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGACATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGG                                                                                                                                                                                                              >  2:672508/1‑164                                                                                                                                                                                                  AACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGACATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCG                                                                                                                                                                                                               <  1:834156/86‑1                                                                                                                                                                                                  AACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGACATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCG                                                                                                                                                                                                               >  2:834156/1‑86                                                                                                                                                                                                      CTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGA                                                                                                                                                                                                                                                  >  1:54161/1‑47                                                                                                                                                                                                      CTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGA                                                                                                                                                                                                                                                  <  2:54161/47‑1                                                                                                                                                                                                                                                 GGGACATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGGTGATAGAGGCTTTCAATCCTGACTGTCCCGTCTCGGTGGACGACGTTCAGAAGGTCTTTCTGGCTGGAAGAGAGTTCGTACTCGTCCACCTCACGATCCAGGACGAAGATCGAGAAAGAACAGAAGTGGGGGTTGCACCCCTCGAAGGAGACTTTTTGAAATCAGTGGCCACGGCTACACTCAAGGTGGTGAAAGATCTC      <  2:1303555/240‑1                                                                                                                                                                                                                                                    ACATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGGTGATAGAGGCTTTCAATCCTGACTGTCCCGTCTCGGTGGACGACGTTCAGAAGGTCTTTCTGGCTGGAAGAGAGTTCGTACTCGTCCACCTCACGATCCAGGACGAAGATCGAGAAAGAACAGAAGTGGGGGTTGCACCCCTCGAAGGAGACTTTTTGAAATCAGTGGCCACGGCTACACTCAAGGTGGTGAAAGATCTCAC    <  1:86964/239‑1                                                                                                                                                                                                                                                    ACATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGGTGATAGAGGCTTTCAATCCTGACTGTCCCGTCTCGGTGGACGACGTTCAGAAGGTCTTTCTGGCTGGAAGAGAGTTCGTACTCGTCCACCTCACGATCCAGGACGAAGATCGAGAAAGAACAGAAGTGGGGGTTGCACCCCTCGAAGGAGACTTTTTGAAATCAGTGGCCACGGCTACACTCAAGGTGGTGAAAGATCTCAC    <  1:228622/239‑1                                                                                                                                                                                                                                                     CATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGGTGATAGAGGCTTTCAATCCTGACTGTCCCGTCTCGGTGGACGACGTTCAGAAGGTCTTTCTGGCTGGAAGAGAGTTCGTACTCGTCCACCTCACGATCCAGGACGAAGATCGAGAAAGAACAGAAGTGGGGGTTGCACCCCTCGAAGGAGACTTTTTGAAATCAGTGGCCACGGCTACACTCAAGGTGGTGAAAGATCTCACCT  >  1:1118741/1‑240                                                                                                                                                                                                                                                     CATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGGTGATAGAGGCTTTCAATCCTGACTGTCCCGTCTCGGTGGACGACGTTCAGAAGGTCTTTCTGGCTGGAAGAGAGTTCGTACTCGTCCACCTCACGATCCAGGACGAAGATCGAGAAAGAACAGAAGTGGGGGTTGCACCCCTCGAAGGAGAC                                                      <  2:1209087/188‑1                                                                                                                                                                                                                                                     CATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGGTGATAGAGGCTTTCAATCCTGACTGTCCCGTCTCGGTGGACGACGTTCAGAAGGTCTTTCTGGCTGGAAGAGAGTTCGTACTCGTCCACCTCACGATCCAGGACGAAGATCGAGAAAGAACAGAAGTGGGGGTTGCACCCCTCGAAGGAGAC                                                      >  1:1209087/1‑188                                                                                                                                                                                                                                                      ATCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGGTGATAGAGGCTTTCAATCCTGACTGTCCCGTCTCGGTGGACGACGTTCAGAAGGTCTTTCTGGCTGGAAGAGAGTTCGTACTCGTCCACCTCACGATCCAGGACGAAGATCGAGAAAGAACAGAAGTGGGGGTTGCACCCCTCGAAGGAGACTTTTTGAAATCAGTGGCCACGGGTACA                           >  1:896252/1‑214                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CATGTTCCCAGAACTGAGAGACGACGAGATAAAAGAAGTCGTCGACACGATAGCGCTCTTTCTTTAGGTGAGATCTTTCACCACCTTGAGTGTAGCCGTGGCCACTGATTTCAAAAAGTCTCCTTCGAGGGGTGCAACCCCCACTTCTGTTCTTTCTCGATCTTCGTCCTGGATCGTGAGGTGGACGAGTACGAACTCTCTTCCAGCCAGAAAGACCTTCTGAACGTCGTCCACCGAGACGGGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_021214/696908‑697153 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggacaTCCACGAACCTTCCAAGGCTCGTTGGAGAAGCGGTGATAGAGGCTTTCAATCCTGACTGTCCCGTCTCGGTGGACGACGTTCAGAAGGTCTTTCTGGCTGGAAGAGAGTTCGTACTCGTCCACCTCACGATCCAGGACGAAGATCGAGAAAGAACAGAAGTGGGGGTTGCACCCCTCGAAGGAGACTTTTTGAAATCAGTGGCCACGGCTACACTCAAGGTGGTGAAAGATCTCACCT  <  NC_021214/697210‑696973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.