| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_021214 | 1071760 = | 277 (0.990) | 12 (0.040) | 7/398 | 12.0 | 4.1% | coding (667/1527 nt) | TMARI_RS05395 | FMN‑binding glutamate synthase family protein |
| ? | NC_021214 | 1071815 = | 294 (1.070) | coding (722/1527 nt) | TMARI_RS05395 | FMN‑binding glutamate synthase family protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCCTCAGCACCGTATCTGAGAGCCATGGCAAGTTCAACAGCCGAGTAAGCTCCCGTCTTCAAGGTGATTCGTTTGAACCCGAGTTTTCTGAGTCTTTCCACTTCTTTCAGGAAGGACTCCTTAGAGACAAAACCAAGTCTTGAGTGTCTTTCGAACTCCTTGATTTCTCCCTCTTTGAACGCTCTCTGAACTTCCGGAAGTTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAG‑TT‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_021214/1072002‑1071760‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ag‑tt‑cAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTTGTCTCTAAGGAGTCCTTCCTGAAAGAAGTGGAAAGACTCAGAAAACTCGGGTTCAAACGAATCACCTTGAAGACGGGAGCTTACTCGGCTGTTGAACTTGCCATGGCTCTCAGATACGGTGCTGAGGCGAAGGTGGATTTGATCACCGTCGATGGAGCACCGGGTGGAACGGGTATG > NC_021214/1071815‑1072050 CGCCTCAGCACCGTATCTGAGAGCCATGGCAAGTTCAACAGCCGAGTAAGCTCCCGTCTTCAAGGTGATTCGTTTGAACCCGAGTTTTCTGAGTCTTTCCACTTCTTTCAGGAAGGACTCCTTAGAGACAAAACCAAGTCTTGAGTGTCTTTCGAACTCCTTGATTTCTCCCTCTTTGAACGCTCTCTGAACTTCCGGAAGTTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAG < 1:332029/240‑1CGCCTCAGCACCGTATCTGAGAGCCATGGCAAGTTCAACAGCCGAGTAAGCTCCCGTCTTCAAGGTGATTCGTTTGAACCCGAGTTTTCTGAGTCTTTCCACTTCTTTCAGGAAGGACTCCTTAGAGACAAAACCAAGTCTTGAGTGTCTTTCGAACTCCTTGATTTCTCCCTCTTTGAACGCTCTCTGAACTTCCGGAAGTTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAG < 2:660576/240‑1 AAGTTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAG‑TTCCAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTTGTCTCTAAGGAGTCCTTCCTGAAAGAAGTGGAAAGACTCAGAAAACTCGGGTTCAAACGAATCACCTTGAAGACGGGAGCTTACTCGGCTGTTGAACTTGCCATGGCTCTCAGATACGGTGCTGAGGCGAAGGTG > 1:176386/1‑240 TTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAGTTT‑CAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTT > 1:623822/1‑102 TTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAGTTT‑CAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTT < 2:623822/102‑1 TTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAG‑TTCCAGAGCGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTT > 1:1161943/1‑102 TTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAG‑TTCCAGAGCGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTT < 2:1161943/102‑1 GGAGAACTATATAACCTCTTCTTTTCAG‑TTCCAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTTGTCTCTAAGGAGTCCTTCCTGAAAGAAGTGGAAAGACTCAGAAAACTCGGGTTCAAACGAATCACCTTGAAGACGGGAGCTTACTCGGCTGTTGAACTTGCCATGGCTCTCAGATACGGTGCTGAGGCGAAGGTGGATTTGATCACCG < 2:176386/239‑1 AGAACTATATAACCTCTTCTTTTCAG‑TT‑CAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTTGT > 1:324731/1‑90 AGAACTATATAACCTCTTCTTTTCAG‑TT‑CAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTTGT < 2:324731/90‑1 AGAACTATATAACCTCTTCTTTTCAG‑TT‑CAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTT > 1:826253/1‑88 AGAACTATATAACCTCTTCTTTTCAG‑TT‑CAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTT < 2:826253/88‑1 ACCTCTTCTTTTCAG‑TTCCAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTTGTCTCTAAGGAGTCCTTCCTGAAAGAAGTGGAAAGACTCAGAAAACTCGGGTTCAAACGAATCACCTTGAAGACGGGAGCTTACTCGGCTGTTGAACTTGCCATGGCTCTCAGATACGGTGCTGAGGCGAAGGTGGATTTGATCACCG < 1:1112056/226‑1 ACCTCTTCTTTTCAG‑TTCCAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTTGTCTCTAAGGAGTCCTTCCTGAAAGAAGTGGAAAGACTCAGAAAACTCGGGTTCAAACGAATCACCTTGAAGACGGGAGCTTACTCGGCTGTTGAACTTGCCATGGCTCTCAGATACGGTGCTGAGGCGAAGGTGGATTTGATCACCG > 2:1112056/1‑226 T‑CAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTTGTCTCTAAGGAGTCCTTCCTGAAAGAAGTGGAAAGACTCAGAAAACTCGGGTTCAAACGAATCACCTTGAAGACGGGAGCTTACTCGGCTGTTGAACTTGCCATGGCTCTCAGATACGGTGCTGAGGCGAAGGTGGATTTGATCACCGTCGATGGAGCACCGGGTGGAACGGGTATG < 2:514970/238‑1 CGCCTCAGCACCGTATCTGAGAGCCATGGCAAGTTCAACAGCCGAGTAAGCTCCCGTCTTCAAGGTGATTCGTTTGAACCCGAGTTTTCTGAGTCTTTCCACTTCTTTCAGGAAGGACTCCTTAGAGACAAAACCAAGTCTTGAGTGTCTTTCGAACTCCTTGATTTCTCCCTCTTTGAACGCTCTCTGAACTTCCGGAAGTTCGGGATCGGGGAGAACTATATAACCTCTTCTTTTCAG‑TT‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_021214/1072002‑1071760‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ag‑tt‑cAGAGAGCGTTCAAAGAGGGAGAAATCAAGGAGTTCGAAAGACACTCAAGACTTGGTTTTGTCTCTAAGGAGTCCTTCCTGAAAGAAGTGGAAAGACTCAGAAAACTCGGGTTCAAACGAATCACCTTGAAGACGGGAGCTTACTCGGCTGTTGAACTTGCCATGGCTCTCAGATACGGTGCTGAGGCGAAGGTGGATTTGATCACCGTCGATGGAGCACCGGGTGGAACGGGTATG > NC_021214/1071815‑1072050 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |