New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_021214	= 1774853	344 (1.230)	8 (0.030)	6/386	12.3	2.4%	coding (1762/2193 nt)	TMARI_RS09220	CRISPR‑associated helicase/endonuclease Cas3
	?	NC_021214	= 1775154	339 (1.280)					coding (1461/2193 nt)	TMARI_RS09220	CRISPR‑associated helicase/endonuclease Cas3
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGAGAAGTTTTCTCTTGATCTTTTCCCACTGAAGATCTCTGCAAATTCTTCGAATACTCTTTGAGCCTCTTCATCAACAAGAACGATGAACGGCACCGTTGGCTCTGGTTCAATGAGACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTTCCTCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_021214/1774604‑1774853 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttcctccagGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGGTGTTGATATCTCATTCGAGAGGGTGATAAGAGACATAGCACCTGTTGACAGTATTGTTCAGGCAGCGGGGAGGTGCAACAGGCACTTCGAGTTGGAAAAGGGAGAAGTGATAGTCGTACCCGTCAGGAATGAGAGAAAAAACACCCTCTTTT  <  NC_021214/1775154‑1774919                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAGAGAAGTTTTCTCTTGATCTTTTCCCACTGAAGATCTCTGCAAATTCTTCGAATACTCTTTGAGCCTCTTCATCAACAAGAACGATGAACGGCACCGTTGGCTCTGGTTCAATGAGACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCC‑TTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCT                                                                                                                                                                                                                                                       >  2:1128166/1‑240   GAGAAGTTTTCTCTTGATCTTTTCCCACTGAAGATCTCTGCAAATTCTTCGAATACTCTTTGAGCCTCTTCATCAACAAGAACGATGAACGGCACCGTTGGCTCTGGTTCAATGAGACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTT                                                                                                                                                                                                                                                      >  1:682629/1‑240       AGTTTTCTCTTGATCTTTTCCCACTGAAGATCTCTGCAAATTCTTCGAATACTCTTTGAGCCTCTTCATCAACAAGAACGATGAACTTCACCGTTGGCTCTGGTTCAATGAGACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTTCC                                                                                                                                                                                                                                                   <  2:196141/239‑1          TTTCTCTTGATCTTTTCCCACTGAAGATCTCTGCAAATTCTTCGAATACTCTTTGAGCCTCTTCATCAACAAGAACGATGAACGGCACCGTTGGCTCTGGTTCAATGAGACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTTCCTCCA                                                                                                                                                                                                                                               >  2:218986/1‑240          TTTCTCTTGATCTTTTCCCACTGAAGATCTCTGCAAATTCTTCGAATACTCTTTGAGCCTCTTCATCAACAAGAACGATGAACGGCACCGTTGGCTCTGGTTCAATGAGACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTTCCTCCA                                                                                                                                                                                                                                               >  1:302841/1‑240          TTTCTCTTGATCTTTTCCCACTGAAGATCTCTGCAAATTCTTCGAATACTCTTTGAGCCTCTTCATCAACAAGAACGATGAACGGCACCGTTGGCTCTGGTTCAATGAGACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTTCCTCCA                                                                                                                                                                                                                                               >  1:33815/1‑240           TTCTCTTGATCTTTTCCCACTGAAGATCTCTGCAAATTCTTCGAATACTCTTTGAGCCTCTTCATCAACAAGAACGATGAACGGCACCGTTGGCTCTGGTTCAATGAGACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTTCCTCCAG                                                                                                                                                                                                                                              <  2:527190/240‑1                 TGATCTTTTCCCACTGAAGATCTCTGCAAATTCTTCGAATACTCTTTGAGCCTCTTCATCAACAAGAACGATGAACGGCACCGTTGGCTCTGGTTCAATGAGACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTTCCTCCAGGGTGAT                                                                                                                                                                                                                                        >  2:81861/1‑240                                                                      CTTCATCAACAAGAACGATGAACGGCACCGTTGGCTCTGGTTCAATGAGACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTT                                                                                                                                                                                                                                                     <  2:673784/174‑1                                                                      CTTCATCAACAAGAACGATGAACGGCACCGTTGGCTCTGGTTCAATGAGACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTT                                                                                                                                                                                                                                                     >  1:673784/1‑174                                                                            CAACAAGAACGATGAACGGCACCGTTGGCTCTGGTTCAATGAGACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTTCCTCCAGGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCC                                                                                                                                                                              >  1:245104/1‑239                                                                                         GAACGGCACCGTTGGCTCTGGTTCAATGAGACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTTCCTCtcgaaaa                                                                                                                                                                                                                                          <  1:794974/166‑8                                                                                         GAACGGCACCGTTGGCTCTGGTTCAATGAGACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTTCCTCtcgaaaa                                                                                                                                                                                                                                          >  2:794974/1‑159                                                                                                ACCGTTGGCTCTGGTTCAATGAGACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTTCCTCCAGGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGG                                                                                                                                                          <  1:81861/239‑1                                                                                                ACCGTTGGCTCTGGTTCAATGAGACGGAATTCTACTTTTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTGCCTCCAGGGTGATACCAAAGCACAGACGGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGG                                                                                                                                                          <  2:245104/239‑1                                                                                                                      GACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGCTTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTTCCTCCAGGGTGATACCAAAGCCCAGACTGGAGATCGTTTCGAAGATAAATGCGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGGTGTTGATAT                                                                                                                                                 >  2:993380/1‑226                                                                                                                      GACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTTCCTCCAGGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGGTGTTGATAT                                                                                                                                                 <  1:993380/226‑1                                                                                                                                                                    GCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTTCCTCCAGGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGG                                                                                                                                                          >  1:421055/1‑171                                                                                                                                                                    GCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTTCCTCCAGGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGG                                                                                                                                                          <  2:421055/171‑1                                                                                                                                                                                                                                                ctaTCCTCCAGGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGGTGTTGATATCTCATTCGAGAGGGTGATAAGAGACATAGCACCTGTTGACAGTATTGTTCAGGCAGCGGGGAGGTGCAACAGGCACTTCGAGTTGGAAAAGGGAGAAGTGATAGTCGTACCCGTCAGGAATGAGAGAAAAAACACC         <  2:1310219/237‑1                                                                                                                                                                                                                                                 TTTCCTCCAGGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGGTGTTGATATCTCATTCGAGAGGGTGATAAGAGACATAGCACCTGTTGACAGTATTGTTCAGGCAGCGGGGAGGTGCAACAGGCACTTCGAGTTGGAAAAGGGAGAAGTGATAGTCGTACCCGTCAGGAATGAGAGAAAAAACACCC        <  1:137466/240‑1                                                                                                                                                                                                                                                 TTTCCTCCAGGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGGTGTTGATATCTCATTCGAGAGGGTGATAAGAGACATAGCACCTGTTGACAGTATTGTTCAGGCAGCGGGGAGGTGCAACAGGCACTTCGAGTTGGAAAAGGGAGAAGTGATAGTCGTACCCGTCAGGAATGAGAGAAAAAACACCC        <  1:250266/240‑1                                                                                                                                                                                                                                                 TTTCCTCCAGGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGGTGTTGATATCTCATTCGAGAGGGTGATAAGAGACATAGCACCTGTTGACAGTATTGTTCAGGCAGCGGGGAGGTGCAACAGGCACTTCGAGTTGGAAAAGGGAGAAGTGATAGTCGTACCCGTCAGGAATGAGAGAAAAAACACCC        <  1:22914/240‑1                                                                                                                                                                                                                                                 TTTCCTCCAGGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGGTGTTGATATCTCATTCGAGAGGGTGATAAGAGACATAGCACCTGTTGACAGTACTGTTCAGGCAGCGGGGAGGTGCAACAGGCACTTCGAGTTGGAAAAGGGAGAAGTGATAGTCGTACCCGTCAGGAATGAGAGAAAAAACACCC        <  2:1019414/240‑1                                                                                                                                                                                                                                                      TCCAGGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGGTGTTGATATCTCATTCGAGAGGGTGATAAGAGACATAGCACCTGTTGACAGTATTGTTCAGGCAGCGGGGAGGTGCAACAGGCACTTCGAGTTGGAAAAGGGAGAAGTGATAGTCGTACCCGTCAGGAATGAGAGAAAAAACACCCTCTTT   <  1:453856/240‑1                                                                                                                                                                                                                                                      TCCAGGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGGTGTTGATATCTCATTCGAGAGGGTGATAAGAGACATAGCACCTGTTGACAGTATTGTTCAGGCAGCGGGGAGGTGCAACAGGCACTTCGAGTTGGAAAAGGGAGAAGTGATAGTCGTACCCGTCAGGAATGAGAGAAAAAACACCCTCTTT   <  2:883959/240‑1                                                                                                                                                                                                                                                      TCCAGGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGGTGTTGATATCTCATTCGAGAGGGTGATAAGAGACATAGCACCTGTTGACAGTATTGGTCAGGCAGCGGGGAGGTGCAACAGGCACTTCGAGTTGGAAAAGGGAGAAGTGATAGTCGTACCCGTCAGGAATGAGAGAAAAAACACCCTCTTT   <  2:80183/240‑1                                                                                                                                                                                                                                                       CCAGGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGGTGTTGATATCTCATTCGAGAGGGTGATAAGAGACATAGCACCTGTTGACAGTATTGTTCAGGCAGCGGGGAGGTGCAACAGGCACTTCGAGTTGGAAAAGGGAGAAGTGATAGTCGTACCCGTCAGGAATGAGAGAAAAAACACCCTCTTTT  <  1:16754/240‑1                                                                                                                                                                                                                                                          GGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGGTGTTGATATCTCATTCGAGAGG                                                                                                                                    >  2:392009/1‑107                                                                                                                                                                                                                                                          GGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGGTGTTGATATCTCATTCGAGAGG                                                                                                                                    <  1:392009/107‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GAGAGAAGTTTTCTCTTGATCTTTTCCCACTGAAGATCTCTGCAAATTCTTCGAATACTCTTTGAGCCTCTTCATCAACAAGAACGATGAACGGCACCGTTGGCTCTGGTTCAATGAGACTGAATTCTCCTATTTTTTTGAAATTCAAATTCTCGAGCGCCTTGCCGATTCCTTTCTTGTCCGGATTGCCGTACGTTTTCACGTAGCTGAAGAAATCCTCCACGAGCATGAAAAACTCGCTTTCCTCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_021214/1774604‑1774853 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttcctccagGGTGATACCAAAGCACAGACTGGAGATCGTTTCGAAGATAAATGAGTACGATCTGTGTGTCTCCACTCAGGTGGTGGAAGCAGGTGTTGATATCTCATTCGAGAGGGTGATAAGAGACATAGCACCTGTTGACAGTATTGTTCAGGCAGCGGGGAGGTGCAACAGGCACTTCGAGTTGGAAAAGGGAGAAGTGATAGTCGTACCCGTCAGGAATGAGAGAAAAAACACCCTCTTTT  <  NC_021214/1775154‑1774919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.