| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 223843 | 50 (0.480) | 18 (0.230) +GAGTTAACTGAACCTTCGGGGAACGTTAACGGCGT |
9/210 | 2.2 | 18.4% | noncoding (73/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | NC_000913 | = 3428664 | 163 (1.560) | noncoding (99/1542 nt) | rrsD | 16S ribosomal RNA | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/223755‑223843‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTG‑CCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCCTCGGGCCTCTTG < NC_000913/3428664‑3428543 ||||||||||||||||||||||||||||||||||| agccgaaCAAAATCTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGAAACGAGTTAACTGAACCTTCGGGGGACGTTAACGGCGTCGAGCGGCGGACGGGTG > 1:1456486/8‑141 agccgaCAAAATCTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGAAACGAGTTAACTGAACCTTCGGGGACCGTTAACGGCGTCGAGCGGCGGACGGGTGA > 1:349729/7‑141 agccgaCAAAATCTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGAAACGAGTTAACTGAACCTTCGGGGAACGTTAACGGCGTCGAGCGGCGGACGGGTGA > 1:642931/7‑141 agccgaCAAAATCTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTAGAGCTGAAACGAGTAAACTGAACCTTCGGTGACCGTTAACGGCGTCGAGCGGCGGACGGGTGA > 1:347490/7‑141 AATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCGAGTCGAGCGGAAACGAGTTAACTGAACCTTCGGGGAACGTTAACGGCGTCGAGCGGCGGACGGGTGAGTAATGCCTAGGAAAt < 1:1910681/141‑2 TGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGAAACGAGTTAACTGAACCTTCGGGGAACGTTAACGGCGTCGAGCGGCGGACGGGTGAGTAATGCCTAGGAAATTG‑C > 2:1546419/1‑141 AGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGAAACGAGTTAACTGAACCTTCGGGGGACGTTAACGGCGTCGAGCGGCGGACGGGTGAGTAATGCCTAGGAAATTG‑CCct > 1:1384839/1‑139 AGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGAAACGAGTTAACTGAACCTTCGGGGGACGTTAACGGCGTCGAGCGGCGGACGGGTGAGTAATGCCTAGGAAATTG‑CCct > 1:1384891/1‑139 GTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGAAACGAGTTAACTGAACCTTCGGGGAACGTTAACGGCGTCGAGCGGCGGACGGGTGAGTAATGTCTGGGAAACTG‑CCTGATG > 1:806638/1‑141 TCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACCTGCAAGTCGAGCGGAAACGAGTTAACTGAACCTTCGGGGGACGTTAACGGCGTCGAGCGGCGGACGGGTGAGTAATGCCTAGGAAATTGCCCTGATGGAGGG < 2:399343/141‑1 TTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGAAACGAGTTAACTGAACCTTCGGGGGACGTTAACGGCGTCGAGCGGCGGACGGGTGAGTAATGTCTGGGAAACTG‑CCTGATGGAGGGGGATAACTACTGG < 2:1390116/141‑1 GCTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGAAACGAGTTAACTGAACCTTCGGGGAACGTTAACGGCGTCGAGCGGCGGACGGGTGAGTAATGCCTAGGAAATTGCCCTGAT‑GTGGGGGATAACCATTGGAAACGG < 1:1732552/141‑1 accGCGGCTGGCCTAACACATGCAAGTCGAGCGGAAACGAGTTAACTGAACCTTCGGGGACCGTTAACGGCGTCGAGCGGCGGACGGGTGAGTAATGTCTGGGAAACTG‑CCTGATGGAGGGGGATAACTACTGGAAACGGT > 1:1341856/4‑141 CTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGAAACGAGTTAACTGAACCTTCGGGGGACGTTAACGGCGTCGAGCGGCGGACGGGTGAGTAATGTCTGGGAAACTG‑CCTGATGGAGGGGGATAACTACTGGAAACGGT > 1:80304/1‑141 CTGGCGGCAGGCCTAACACATGCAAGTCGAGCGGAAACGAGTTAACTGAACCTTCGGGGGACGTTAACGGCGTCGAGCGGCGGACGGGTGAGTAATGTCTGGGAAACTG‑CCTGATGGAGGGGGATAACTACTGGAAACGGT > 1:80307/1‑141 CAAGTCGAGCGGAAACGAGTTAACTGAACCTTCGGGGAACGTTAACGGCGTCGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTG‑CCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGC > 1:41528/1‑141 ggaAACGAGTTAACTGAACCTTCGGGGGACGTTAACGGCGTCGAGCGGCGGACGGGTGAGTAATGCCTAGGAAATTGCCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAATGTCGCAAGACCAAA < 2:1428797/138‑1 ggaAACGAGTTAACTGAACCTTCGGGGGACGTTAACGGCGTCGAGCGGCGGACGGGTGAGTAATGCCTAGGAAATTGCCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAATGTCGCAAGACCAAA < 2:1797263/138‑1 AACTGAACCTTCGGGGAACGTTAACGGCGTCGAGCGGCGGACGGGTGAGTAATGTCTGGGAAACTG‑CCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCtt > 1:1353890/1‑139 CGGGGGACGTTAACGGCGTCGAGCGGCGGACGGGTGAGTAATGTCTGGGAAACTG‑CCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCTTCGGGCCTCTTG < 2:1829842/141‑1 ||||||||||||||||||||||||||||||||||| TGAGCATCAAACTTTTAAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/223755‑223843‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTG‑CCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGGACCCTCGGGCCTCTTG < NC_000913/3428664‑3428543 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |