BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,296,060	0	C	T	30.2%	192.8 / 128.2	149	intergenic (+266/+376)	gltP/yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
Reads supporting (aligned to +/- strand): ref base C (58/46); new base T (17/28); total (75/74)
Fisher's exact test for biased strand distribution p-value = 5.08e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.29e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 149 total aligned reads displayed.

CGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTT  >  NC_000913/4295923‑4296199

cGTTTATGCCGCCTCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGcc                                                                                                                                          <  2:1243887/141‑1 (MQ=17)

 gTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCt                                                                                                                                         <  1:1737540/141‑1 (MQ=17)

 gTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCt                                                                                                                                         <  1:2034746/141‑1 (MQ=32)

        ccGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGa                                                                                                                                  <  1:364878/141‑1 (MQ=17)

        ccGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGa                                                                                                                                  <  1:364902/141‑1 (MQ=17)

          gCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACg                                                                                                                                >  2:1097660/1‑141 (MQ=17)

           cagccGCCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCCTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGc                                                                                                                               <  2:1743364/138‑1 (MQ=12)

                gaattCACCGCCAGATGCTTCGATTACCGCGTCTTTTCAGGCCTTCGGCAGACCGCGCAATCTCCTGATTTAGCGTGATTTTGTCCGTCGGATCTGGCGTTTACGCCGCCTACGACC‑TCAACGCCTGATGCGACGCTTGcc                                                                                                                          <  1:1541725/137‑1 (MQ=2)

                gACTTCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGcc                                                                                                                          <  1:1297664/141‑1 (MQ=21)

                     cAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTc                                                                                                                     <  2:2001334/141‑1 (MQ=12)

                          ccTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                                <  2:2589804/141‑1 (MQ=37)

                          ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                                <  2:1654052/141‑1 (MQ=25)

                          ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                                <  2:1653793/141‑1 (MQ=25)

                          ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                                <  1:721473/141‑1 (MQ=25)

                          ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                                <  1:746949/141‑1 (MQ=37)

                          ccTGATGCGACGCTTAACGCGTCGTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                                <  1:1851321/141‑1 (MQ=25)

                            tGATGCGACGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                                                              <  1:1097689/141‑1 (MQ=25)

                            tGATGCGACGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                                                              <  1:1097755/141‑1 (MQ=25)

                            tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                                                              >  2:2551876/1‑141 (MQ=25)

                            tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                                                              >  1:1132392/1‑141 (MQ=25)

                            tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGC‑TGTCGCGTCTTATCAgg                                                                                                             >  1:1754160/1‑141 (MQ=255)

                            tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                                                              >  1:2303590/1‑141 (MQ=37)

                            tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGGCACTGGTTGCCTGATGCGACGCTTG‑CGCGTCTTATCAg                                                                                                              >  2:987229/1‑141 (MQ=11)

                             gATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                                                             >  1:1235159/1‑141 (MQ=25)

                             gATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGC‑TGTCGCGTCTTATCAGGc                                                                                                            <  2:1754160/141‑1 (MQ=255)

                             gATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                                                             <  1:8571/141‑1 (MQ=37)

                              aTGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                            <  2:2391962/141‑1 (MQ=25)

                               tGCGACGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                                                           <  1:1772448/141‑1 (MQ=37)

                               tGCGACGCTTAACGCGTCTTATCAGGGCTAAGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                                                           <  1:1520011/141‑1 (MQ=255)

                               tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTTGGACGGATAAGGAGTTTTCGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                                                           <  1:2656772/141‑1 (MQ=11)

                               tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                                                           <  1:2398598/141‑1 (MQ=37)

                               tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                                                           <  1:2444381/141‑1 (MQ=37)

                               tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                                                           <  1:2181733/141‑1 (MQ=37)

                               tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc                                                                                                           <  1:2625149/141‑1 (MQ=37)

                                gCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt                                                                                                          <  1:1933907/141‑1 (MQ=17)

                                  gACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTat                                                                                                        >  2:1608272/1‑140 (MQ=21)

                                   aCGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatc                                                                                                       >  1:561677/1‑139 (MQ=12)

                                             cgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcg                                                                                             >  1:798386/1‑141 (MQ=37)

                                              gTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcgc                                                                                            >  1:2057756/1‑141 (MQ=37)

                                                cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                                >  2:721415/1‑119 (MQ=37)

                                                cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCaa                                                                                          >  1:1480063/1‑141 (MQ=37)

                                                 ttATCTGTCATACGCCAGCCCGCGAAATCTCCTTATTTAGCGTGATTTTGTAGGTCGGATATGGCTTTTACGCCGCATCCGACT‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAAt                                                                                         <  2:84616/141‑1 (MQ=11)

                                                       ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATATCCTg                                                                                   >  2:282649/1‑141 (MQ=37)

                                                       ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGccgg                                                                                   >  2:535692/1‑139 (MQ=37)

                                                       ggCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTg                                                                                   >  1:428913/1‑141 (MQ=37)

                                                            aCGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTa                                                                              >  1:328580/1‑141 (MQ=37)

                                                                cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                                >  1:2058904/1‑103 (MQ=38)

                                                                cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGt                                                                          >  1:2187228/1‑141 (MQ=37)

                                                                 aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTCGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg                                                                         <  2:2074187/141‑1 (MQ=37)

                                                                 aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTc                                                                                                                     <  1:647850/97‑1 (MQ=255)

                                                                 aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACTCCAGACAGCGCAAAAGCCGGATTTAGctgg                                                                         >  2:204835/1‑138 (MQ=255)

                                                                 aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg                                                                         >  2:624397/1‑141 (MQ=37)

                                                                 aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg                                                                         >  2:1954153/1‑141 (MQ=37)

                                                                 aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg                                                                         >  2:616477/1‑141 (MQ=37)

                                                                 aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg                                                                         >  1:32840/1‑141 (MQ=37)

                                                                 aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg                                                                         <  1:1959706/141‑1 (MQ=37)

                                                                 aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg                                                                         >  2:1336683/1‑141 (MQ=37)

                                                                 aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCAAGACAGCGCAATAGCCTGATTTAGCGTg                                                                         >  2:1839033/1‑141 (MQ=37)

                                                                 aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAAGCCAGACAGCGCTATAGCCTGATTTAGCGTg                                                                         >  2:1839023/1‑141 (MQ=255)

                                                                 aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg                                                                         >  2:487684/1‑141 (MQ=17)

                                                                  gcccgcgcAAGCGCCTGATTTAGCGTGATTTTGTAGGTCGGATACGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGa                                                                        <  2:1008433/137‑1 (MQ=255)

                                                                  gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                                                              >  2:76200/1‑103 (MQ=40)

                                                                  gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGa                                                                        >  2:1097774/1‑141 (MQ=37)

                                                                  gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGa                                                                        >  2:952310/1‑141 (MQ=37)

                                                                  gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGa                                                                        >  2:1097689/1‑141 (MQ=37)

                                                                  gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGa                                                                        <  2:736005/141‑1 (MQ=37)

                                                                   cccgcgcAATAGCCTGATTTAGCGTGATTTTGTCGGTCGGATAAGGCGTTAAAGCCGCATCCGAAC‑TCAACGCCTGTGGCGAAGATTGCAGCGACTTAACTGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAt                                                                       <  1:1317568/138‑1 (MQ=11)

                                                                   aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCTCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAt                                                                       <  2:1269027/141‑1 (MQ=17)

                                                                   aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAt                                                                       >  2:796232/1‑141 (MQ=37)

                                                                   aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAt                                                                       >  2:1508228/1‑141 (MQ=37)

                                                                     aGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                                <  2:37059/98‑1 (MQ=255)

                                                                     aGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAATGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                                <  2:37071/98‑1 (MQ=255)

                                                                     aGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATc                                                                                                                >  1:37071/1‑98 (MQ=40)

                                                                      gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCg                                                                                                                                   <  2:855338/78‑1 (MQ=34)

                                                                      gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt                                                                    >  1:855407/1‑141 (MQ=37)

                                                                      gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAAGCAAGACATCGGAATATCCTTATTTAGCGTGAtaat                                                                    >  2:1039660/1‑138 (MQ=11)

                                                                       cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCATCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCGTGATTTAGCGTGATTTTg                                                                   >  1:2099975/1‑141 (MQ=255)

                                                                       cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTTCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTg                                                                   <  1:1669647/141‑1 (MQ=21)

                                                                           aTAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAgg                                                               >  2:1069694/1‑141 (MQ=37)

                                                                            tAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGt                                                              >  1:681524/1‑141 (MQ=37)

                                                                                 tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAt                                                         >  2:1099616/1‑141 (MQ=37)

                                                                                 tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTCTAGGTCGGAt                                                         >  2:1475486/1‑141 (MQ=37)

                                                                                  gATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATa                                                        <  1:2241014/141‑1 (MQ=37)

                                                                                  gATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATa                                                        >  1:539996/1‑141 (MQ=37)

                                                                                    tttAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAg                                                      <  2:2058982/141‑1 (MQ=37)

                                                                                    tttAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAg                                                      <  1:1259887/141‑1 (MQ=37)

                                                                                    ttgaGCGTGTTTTTGTTGGTCGCAAAACGCGTCAACGCCGCAACCGCCA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAg                                                      <  2:2058650/138‑1 (MQ=11)

                                                                                        gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGt                                                  >  1:907443/1‑141 (MQ=37)

                                                                                           tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTa                                               >  1:1477589/1‑141 (MQ=17)

                                                                                            gATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAt                                              >  1:2272100/1‑141 (MQ=37)

                                                                                            gATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCATGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAt                                              >  2:2471943/1‑141 (MQ=37)

                                                                                                       ttggATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGa                                   <  2:1086619/139‑1 (MQ=37)

                                                                                                       tCGGATACGGCGTTTATGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTGGTAGGTCGGATAAGGCGTTTATGCCGCATCCGa                                   <  2:273629/141‑1 (MQ=12)

                                                                                                       tCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGa                                   <  2:1547934/141‑1 (MQ=37)

                                                                                                       tCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGa                                   <  1:1954153/141‑1 (MQ=37)

                                                                                                               ggCGTTTATGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATa                                                        <  1:262063/112‑1 (MQ=17)

                                                                                                                    ttACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAAGCCGCATCCGACATCAACGCCTGa                      >  1:1123480/1‑141 (MQ=37)

                                                                                                                          cgcATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGAc                <  1:1069694/141‑1 (MQ=34)

                                                                                                                                cGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCttta          >  2:1204314/1‑139 (MQ=21)

                                                                                                                                         aCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCtt  >  1:772656/1‑141 (MQ=31)

CGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑TCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTT  >  NC_000913/4295923‑4296199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`