Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,038,7380CT34.5% 656.6 / inf 336noncoding (1220/2905 nt)rrlA23S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base C (92/128);  new base T (53/63);  total (145/191)
Fisher's exact test for biased strand distribution p-value = 5.63e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 336 total aligned reads displayed.

TTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCC  >  NC_000913/4038600‑4038867
                                                                                                                                             |                                                                                                                                 
     gaaagCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTCTGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAgg                                                                                                                            <  2:1477830/141‑1 (MQ=255)
      aaagCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACTCTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAggt                                                                                                                           <  2:1129045/141‑2 (MQ=38)
      aaagCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGc                                                                                                                           <  2:1819233/141‑1 (MQ=40)
      aaagCGTAAGAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGc                                                                                                                           <  2:1662619/141‑1 (MQ=255)
       aagCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCa                                                                                                                          >  2:61641/1‑141 (MQ=40)
         gCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCT‑AAGTAGTAAACCGAAGCTGCGGCA‑ATACTCTTTGAG‑‑TATTG‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCt                                                                                                                      >  1:1949142/1‑141 (MQ=2)
          cGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGc                                                                                                                       <  2:1556812/141‑1 (MQ=40)
          cGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGc                                                                                                                       <  2:715495/141‑1 (MQ=40)
          cGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGc                                                                                                                       <  2:1911665/141‑1 (MQ=40)
             aaTAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTgg                                                                                                                    <  1:60480/141‑1 (MQ=40)
               tAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAg                                                                                                                  <  2:1071514/141‑1 (MQ=40)
               tAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAg                                                                                                                  <  2:764662/141‑1 (MQ=40)
               tAGCTCACTAGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTCAAACCATGCACCGAAGCTACGG‑‑GTATCATCTTATGA‑TGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAg                                                                                                                  <  2:27744/141‑1 (MQ=2)
                    cACTAGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTCAAACCATGCACCGAAGCTACGG‑‑GTATCATCTTATGA‑TGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATc                                                                                                             <  1:1160213/141‑1 (MQ=2)
                        ggTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGaa                                                                                                         <  1:1707256/141‑1 (MQ=40)
                           cGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTCAAACCATGCACCGAAGCTACGG‑‑GTATCATCTTATGA‑TGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTg                                                                                                      >  1:1613321/1‑141 (MQ=2)
                           cGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTCAAACCATGCACCGAAGCTACGG‑‑GTATCATCTTATGA‑TGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTg                                                                                                      >  2:1147595/1‑141 (MQ=2)
                              gTCGGCCTGCGCGGAAGATGTAACGGGGCTCAAACCATGCACCGAAGCTACGG‑‑GTATCATCTTATGA‑TGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGa                                                                                                   >  1:1512399/1‑141 (MQ=2)
                              gTCGGCCTGCGCGGAAGATGTAACGGGGCTCAAACCATGCACCGAAGCTACGG‑‑GTATCATCTTATGA‑TGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGa                                                                                                   >  1:1817853/1‑141 (MQ=2)
                              gTCGGCCTGCGCGGAAGATGTAACGGGGCTCAAACCATGCACCGAAGCTACGG‑‑GTATCATCTTATGA‑TGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGa                                                                                                   >  1:1260407/1‑141 (MQ=2)
                              gTCGGCCTGCGCGGAAGATGTAACGGGGCT‑AAGTAGTAAACCGAAGCTGCGGCA‑ATACTCTTTGAG‑‑TATTG‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAAt                                                                                                 >  1:650450/1‑141 (MQ=2)
                                cGGCCTGCGCGGAAGATGTAACGGGGCT‑AAGTAGTAAACCGAAGCTGCGGCA‑ATACTCTTTGAG‑‑TATTG‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGc                                                                                               <  1:63914/141‑1 (MQ=2)
                                 ggCCTGCGCGGAAGATGTAACGGGGCT‑AAGTAGTAAACCGAAGCTGCGGCA‑ATATACT‑TTTGTATATTG‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGc                                                                                               <  1:681560/141‑1 (MQ=2)
                                  gCCTGCGCGGAAGATGTAACGGGGCT‑AAGTAGTAAACCGAAGCTGCGGCA‑ATACTCTTTGAG‑‑TATTG‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTg                                                                                             <  1:397207/141‑1 (MQ=2)
                                  gCCTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGc                                                                                               <  2:502580/141‑1 (MQ=40)
                                    cTGCGCGGAAGATGTAACGGGGCTCAAACCATGCACCGAAGCTACGG‑‑GTATCATCTTATGA‑TGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTg                                                                                             <  1:1670041/141‑1 (MQ=2)
                                    cTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTg                                                                                             <  1:56843/141‑1 (MQ=40)
                                    cTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTg                                                                                             <  1:387153/141‑1 (MQ=40)
                                     tGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGa                                                                                            <  1:360228/141‑1 (MQ=40)
                                      gcgcGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGAc                                                                                           >  2:1253586/1‑141 (MQ=40)
                                          ggAAGATGTAACGGGGCTCAAACCATGCACCGAAGCTACGG‑‑GTATCATCTTATGA‑TGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACAtga                                                                                       <  2:315799/141‑3 (MQ=2)
                                          ggAAGATGTAACGGGGCTCAAACCATGCACCGAAGCTACGG‑‑GTATCATCTTACGA‑TGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACAtga                                                                                       <  2:1336883/141‑3 (MQ=2)
                                          ggAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATaa                                                                                       <  2:1314810/141‑1 (MQ=40)
                                            aaGATGTAACGGGGCTCAAACCATGCACCGAAGCTACGG‑‑GTATCATCTTACGA‑TGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGt                                                                                     <  1:1018396/141‑1 (MQ=2)
                                            aaGATGTAACGGGGCT‑AAGTAGTAAACCGAAGCTGCGGCA‑ATACTCTTTGAG‑‑TATTG‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTaa                                                                                   >  1:814135/1‑141 (MQ=2)
                                            aaGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGt                                                                                     <  2:1747327/141‑1 (MQ=40)
                                              gATGTAACGGGGCT‑AAGTAGTAAACCGAAGCTGCGGCA‑ATACTCTTTGAG‑‑TATTG‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACg                                                                                 <  1:1762043/141‑1 (MQ=2)
                                                tGTAACGGGGCTCAAACCATGCACCGAAGCTACGG‑‑GTATCATCTTATGA‑TGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACg                                                                                 >  1:897534/1‑141 (MQ=2)
                                                tGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACg                                                                                 <  1:14332/141‑1 (MQ=40)
                                                tGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACg                                                                                 >  2:485292/1‑141 (MQ=40)
                                                       gggCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGc                                                                          <  2:1369774/141‑1 (MQ=40)
                                                        ggCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCg                                                                         <  1:515159/141‑1 (MQ=40)
                                                         gCT‑AAACCATGCTCCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg                                                                        >  1:215657/1‑141 (MQ=255)
                                                         gCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg                                                                        <  2:173405/141‑1 (MQ=40)
                                                         gCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg                                                                        <  2:1420521/141‑1 (MQ=40)
                                                         gCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg                                                                        <  2:580821/141‑1 (MQ=40)
                                                         gCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg                                                                        <  2:388465/141‑1 (MQ=40)
                                                                 cATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa                                                                 <  1:453619/141‑1 (MQ=40)
                                                                 cATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa                                                                 >  1:752354/1‑141 (MQ=40)
                                                                  aTGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg                                                                >  2:650141/1‑141 (MQ=40)
                                                                  aTGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg                                                                >  1:1943928/1‑141 (MQ=40)
                                                                  aTGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg                                                                >  2:530809/1‑141 (MQ=40)
                                                                         gAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc                                                         >  1:994888/1‑141 (MQ=40)
                                                                         gAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc                                                         <  1:812765/141‑1 (MQ=40)
                                                                         gAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc                                                         <  1:1314871/141‑1 (MQ=40)
                                                                          aaGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCg                                                        >  1:40290/1‑141 (MQ=40)
                                                                               gCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGa                                                   <  2:1497040/141‑1 (MQ=40)
                                                                                   cAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAc                                               <  2:862394/141‑1 (MQ=40)
                                                                                   cAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAc                                               <  1:86127/141‑1 (MQ=40)
                                                                                     gCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCa                                             <  1:330916/141‑1 (MQ=40)
                                                                                        acacTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAgg                                          <  2:197898/141‑1 (MQ=38)
                                                                                        acacTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAgg                                          <  1:1861857/141‑1 (MQ=38)
                                                                                                tgtatattg‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTg                                   >  1:723114/7‑141 (MQ=11)
                                                                                                  t‑tgttg‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc                                <  2:1762460/141‑1 (MQ=32)
                                                                                                  t‑tgttg‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc                                >  1:1048778/1‑141 (MQ=32)
                                                                                                  t‑tgttg‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc                                >  1:830000/1‑141 (MQ=32)
                                                                                                  t‑tgttg‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc                                >  1:244371/1‑141 (MQ=32)
                                                                                                   gtattg‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAGGACCAAGGGTTCCTGTcc                                <  2:695852/138‑1 (MQ=11)
                                                                                                    tattg‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCa                               >  1:1292848/3‑141 (MQ=11)
                                                                                                     gttg‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCaa                              >  1:967887/1‑141 (MQ=32)
                                                                                                     gttg‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCaa                              >  1:189980/1‑141 (MQ=32)
                                                                                                     attg‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCaa                              >  1:916279/2‑141 (MQ=11)
                                                                                                             aGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAAt                       <  1:1133124/141‑1 (MQ=32)
                                                                                                              ggggAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATc                      <  1:1803337/141‑1 (MQ=32)
                                                                                                                  aGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCgggg                  <  1:281567/141‑1 (MQ=32)
                                                                                                                  aGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGGCATGAGTAACGACAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTTCCTGCGCAACGTTAATCgacg                  >  1:934695/1‑138 (MQ=2)
                                                                                                                  aGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTTCCTGCGCAACGTTAATCgacg                  >  1:1739800/1‑138 (MQ=11)
                                                                                                                   gCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc                 <  1:424741/141‑1 (MQ=11)
                                                                                                                   gCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc                 >  1:1340490/1‑141 (MQ=11)
                                                                                                                   gCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc                 <  1:819169/141‑1 (MQ=11)
                                                                                                                   gCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc                 <  1:1250952/141‑1 (MQ=32)
                                                                                                                   gCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc                 <  1:1220384/141‑1 (MQ=32)
                                                                                                                   gCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc                 >  1:768353/1‑141 (MQ=32)
                                                                                                                   gCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc                 <  1:1382160/141‑1 (MQ=32)
                                                                                                                   gCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTTCCTGCGCAACGTTAATCgacgc                 <  1:1771796/141‑5 (MQ=11)
                                                                                                                   gCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTTCCTGCGCAACGTTAATCgacgc                 <  1:1819847/141‑5 (MQ=11)
                                                                                                                   gCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTTCCTGCGCAACGTTAATCgacgc                 <  1:912430/141‑5 (MQ=11)
                                                                                                                    cGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCa                <  1:70012/141‑1 (MQ=11)
                                                                                                                     gTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTTCCTGCGCAACGTTAATCGACGCAg               >  1:1189380/1‑141 (MQ=2)
                                                                                                                       tCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAggg             <  2:1290559/141‑1 (MQ=11)
                                                                                                                        cTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGt            >  1:1750999/1‑141 (MQ=11)
                                                                                                                        cTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCAGGTGAAAAGCCCGATCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGt            >  1:1537083/1‑141 (MQ=17)
                                                                                                                         tGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTTCCTGTCCAACGTTAATCGGGGCAGGGTg           <  2:1613321/141‑1 (MQ=11)
                                                                                                                          gTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTTCCTGCGCAACGTTAATCGACGCAGGGtta          <  1:1545201/141‑3 (MQ=2)
                                                                                                                              gCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCg      <  1:468353/141‑1 (MQ=32)
                                                                                                                                ggttgAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAc    <  2:42406/138‑1 (MQ=11)
                                                                                                                                cTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAc    <  2:816661/141‑1 (MQ=32)
                                                                                                                                 gttgAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAcc   <  2:897179/139‑1 (MQ=11)
                                                                                                                                  gtgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccc  >  1:1656284/1‑141 (MQ=31)
                                                                                                                                  gtgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccc  >  1:1063528/1‑141 (MQ=31)
                                                                                                                                             |                                                                                                                                 
TTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGT‑TGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCC  >  NC_000913/4038600‑4038867

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑