| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,038,781 | 0 | A | G | 29.9% | 469.1 / 201.3 | 235 | noncoding (1263/2905 nt) | rrlA | 23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (74/90); new base G (30/40); total (105/130) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.61e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 239 total aligned reads displayed.
GGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCC > NC_000913/4038642‑4038867 | ggAAGATGTAACGGGGCT‑AAGTAGTAAACCGAAGCTGCGGCA‑ATACTCTTTGAG‑TATTG‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGt < 2:1893282/141‑1 (MQ=2)ggAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATaa < 2:1102977/141‑1 (MQ=40)ggAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATaa < 2:1314810/141‑1 (MQ=40) aaGATGTAACGGGGCTCAAACCATGCACCGAAGCTACGG‑‑GTATCATCTTATGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGt < 2:285511/141‑1 (MQ=2) aaGATGTAACGGGGCTCAAACCATGCACCGAAGCTACGG‑‑GTATCATCTTACGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGt < 1:1018396/141‑1 (MQ=2) aaGATGTAACGGGGCT‑AAGTAGTAAACCGAAGCTGCGGCA‑ATACTCTTTGAG‑TATTG‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTaa > 1:814135/1‑141 (MQ=2) aGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTa < 1:1563305/141‑1 (MQ=40) gATGTAACGGGGCTCAAACCATGCACCGAAGCTACGG‑‑GTATCATCTTATGATGATGCGGTAGAGGAGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTaa < 2:1567187/141‑1 (MQ=2) gATGTAACGGGGCT‑AAGTAGTAAACCGAAGCTGCGGCA‑ATACTCTTTGAG‑TATTG‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACg < 1:974422/141‑1 (MQ=2) gATGTAACGGGGCT‑AAGTAGTAAACCGAAGCTGCGGCA‑ATACTCTTTGAG‑TATTG‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACg < 1:1762043/141‑1 (MQ=2) tGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACg > 2:485292/1‑141 (MQ=40) tGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACg < 1:14332/141‑1 (MQ=40) cGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATaaa > 2:1435690/1‑141 (MQ=40) cGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATaaa > 1:1778263/1‑141 (MQ=40) gggCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGc < 2:1369774/141‑1 (MQ=40) ggCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCg < 2:887280/141‑1 (MQ=40) ggCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCg < 1:1788205/141‑1 (MQ=40) ggCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCg < 1:515159/141‑1 (MQ=40) gCT‑AAACCATGCTCCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg > 1:215657/1‑141 (MQ=255) gCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg < 2:580821/141‑1 (MQ=40) gCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg > 1:1816311/1‑141 (MQ=40) gCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg < 2:166524/141‑1 (MQ=40) gCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg < 2:173405/141‑1 (MQ=40) gCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCgg < 2:173857/141‑1 (MQ=40) cATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa > 1:1182065/1‑141 (MQ=40) cATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa < 1:666026/141‑1 (MQ=40) cATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa < 1:454181/141‑1 (MQ=40) aTGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 1:523529/1‑141 (MQ=40) aTGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 1:1943931/1‑141 (MQ=40) aTGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 1:345287/1‑141 (MQ=40) aTGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAg > 2:530501/1‑141 (MQ=40) gAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc < 1:238323/141‑1 (MQ=40) gAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc > 1:994888/1‑141 (MQ=40) gAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc > 1:903137/1‑141 (MQ=40) gAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc < 1:813001/141‑1 (MQ=40) gAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGGAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTc > 2:1411140/1‑141 (MQ=255) aaGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCg > 1:40290/1‑141 (MQ=40) cTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCg < 2:1302291/141‑1 (MQ=40) gCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGa < 2:1495896/141‑1 (MQ=40) ggCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAg > 2:532448/1‑141 (MQ=40) ggCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAg < 1:1154138/141‑1 (MQ=40) ggCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGCGATGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAg < 1:886240/141‑1 (MQ=25) cAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAc < 2:862394/141‑1 (MQ=40) cAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAc < 2:676765/141‑1 (MQ=40) cAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAc < 1:86127/141‑1 (MQ=40) cAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGAc < 2:398617/141‑1 (MQ=40) acacTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAgg < 1:1861857/141‑1 (MQ=38) aTGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTcc < 1:426737/141‑1 (MQ=34) tgtatattg‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTg > 1:723123/7‑141 (MQ=11) gcgttgttG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTg > 1:1647027/3‑141 (MQ=11) ttgttg‑GGTAGGGGAGCGTTGTGTAAGCCGGTGTGGGTGTGCTGTGAGGCATGCTGGAGGTATCAGACGTGCGAATGGTGACAGTAGTAACGATAAAGCGGGTGAGATGCCCGCTCGCGGGAGGACCGTGGGTTCGTGTcg > 2:374266/1‑140 (MQ=11) ttgttg‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc > 1:1048778/1‑141 (MQ=32) ttgttg‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc < 2:1762460/141‑1 (MQ=32) ttgttg‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc > 2:705686/1‑141 (MQ=32) ttgttg‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc < 1:134515/141‑1 (MQ=32) ttgttg‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc > 1:1668284/1‑141 (MQ=32) ttgttg‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc < 1:625329/141‑1 (MQ=32) ttgttg‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc > 1:384986/1‑141 (MQ=32) gtattg‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTcc < 2:724136/138‑1 (MQ=11) gtattg‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCAAGCCGGAAGACCAAGGGTTCCTGTcc < 2:766059/138‑1 (MQ=11) tgttg‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCa > 1:422517/1‑141 (MQ=32) tattg‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCa > 1:1917247/3‑141 (MQ=11) tattg‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGGCATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCa > 1:1692217/3‑141 (MQ=11) tattg‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCa > 1:1946123/3‑141 (MQ=11) tattg‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCa > 1:1292848/3‑141 (MQ=11) tattg‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCa < 1:490196/139‑1 (MQ=11) tattg‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCa > 1:719605/3‑141 (MQ=11) tattg‑GGTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCa > 1:121130/3‑141 (MQ=11) g‑ggTAGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGt < 2:1517424/141‑1 (MQ=11) aGGGGAGCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAAt < 1:965730/141‑1 (MQ=11) aGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCgggg < 2:1134236/141‑1 (MQ=32) aGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCgggg < 1:281567/141‑1 (MQ=32) aGCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGGCATGAGTAACGACAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTTCCTGCGCAACGTTAATCgacg > 1:934695/1‑138 (MQ=2) gCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc < 1:819169/141‑1 (MQ=11) gCGTTCTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAACAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc > 1:174100/1‑141 (MQ=11) gCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc > 1:768353/1‑141 (MQ=32) gCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc < 2:489851/141‑1 (MQ=32) gCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc < 1:1253586/141‑1 (MQ=32) gCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc < 1:1250952/141‑1 (MQ=32) gCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGc < 1:1220384/141‑1 (MQ=32) gCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTTCCTGCGCAACGTTAATCgacgc < 1:1819835/141‑5 (MQ=11) gCGTTCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTTCCTGCGCAACGTTAATCGGGGc < 2:647267/141‑1 (MQ=11) gTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAg > 2:1818044/1‑141 (MQ=32) gTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAg > 2:418776/1‑141 (MQ=32) tCTGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAggg < 2:1290413/141‑1 (MQ=11) cTGTAAGCGGTTGAAGGTGTGTGGTAACGCATGCTGGACGTATCAGAAGTGCGAATGCTGACATGAGTAACGATAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGt > 1:1750999/1‑141 (MQ=11) cTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGt > 1:1827261/1‑141 (MQ=32) cTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCAGGTGAAAAGCCCGATCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGt > 1:1537083/1‑141 (MQ=17) tGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTTCCTGTCCAACGTTAATCGGGGCAGGGTg < 2:1613321/141‑1 (MQ=11) tGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTTCCTGCGCAACGTTAATCGACGCAGGGtt < 1:1328724/141‑2 (MQ=2) tGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTTCCTGCGCAACGTTAATCGACGCAGGGtt < 1:1878/141‑2 (MQ=2) tGTAAGCCTGTGAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTTCCTGCGCAACGTTAATCGACGCAGGGtt < 1:913880/141‑2 (MQ=2) gTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGa > 1:1528528/1‑141 (MQ=32) gTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGa > 1:1729640/1‑141 (MQ=32) gCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCg < 1:779947/141‑1 (MQ=32) gtgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccc > 2:206257/1‑141 (MQ=31) gtgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccc > 1:699713/1‑141 (MQ=31) gtgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccc > 1:1113668/1‑141 (MQ=31) gtgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAccc > 1:1063528/1‑141 (MQ=31) gtgAAGGTGAGTTGAGAAGCTTGCTGGAGGTATCAGAAGTGCGAATGCTGACATGAGTAACGACAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTTCCTGCGCAACGTTAATCGACGCAGGGTTAGTCggtcc > 1:302788/1‑137 (MQ=2) | GGAAGATGTAACGGGGCT‑AAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTG‑GGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCC > NC_000913/4038642‑4038867 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |