LTEE: LTEE Ara experiment stats

Notes

Publication:

Tenaillon O, Barrick JE, Ribeck N, Deatherage DE, Blanchard JL, Dasgupta A, et al. Tempo and mode of genome evolution in a 50,000-generation experiment. Nature. 2016;536: 165–170

Hypermutator samples were excluded.
Flask were named after generations.
No resequencing data available.

ALE, flask, and isolate counts

ALE replicate	Flask count	Isolate count
0	1	1
1	11	22
2	11	22
3	4	8
4	11	22
5	11	22
6	5	10
7	54	107

ALE experiment mutation counts

Mutation Type	Unique	Observed
Single Base Substitutions	326	1394
Multiple Base Substitutions	2	8
Deletions	133	621
Insertions	42	169
Mobile Element Insertions	151	622
Amplifications	25	117
Gene Conversions	1	1
Inversions	1	3
Total	681	2935

ALE experiment functional change counts

Functional Change Type	Unique	Observed
Intergenic	143	604
Noncoding	1	2
Pseudogene	10	46
Synonymous	0	0
Nonsynonymous	0	0
Total	154	652

Mutation Needle Plot

Mutation Targets