Mutation Type |
Observed Mutations |
Unique Mutations |
Single Base Substitutions |
1340802 |
611860 |
Multiple Base Substitutions |
94107 |
33234 |
Deletions |
81638 |
18685 |
Insertions |
62962 |
12996 |
Mobile Element Insertions |
9088 |
1513 |
Amplifications |
37906 |
31179 |
Gene Conversions |
17 |
5 |
Inversions |
6 |
1 |
ALEDB is the largest collection of microbial evolution mutation data in the world
1626526 instances of 709473 unique mutations from 11821 isolates across 236 unique projects
More projects added every month
Search through ALEDB to compare results from multiple experiments at once
Three mutation callers for triple the confidence
Industry standard tools Breseq and GATK's HaplotypeCaller for more standard mutation calls
CNVnator for larger deletions and amplification mutations
Detailed alignment and coverage reports powered by gdtools for a consistent browsing experience
Example mutation alignment reports:
SNP,
INS,
AMP
Easily export mutation data as CSV spreadsheets
For further analysis using your favorite spreadsheet tools and scripts
ALEDB contains data from over 93 different publications from around the world
To add your own data on ALEDB or to run your own ALE experiment contact us here
License
Copyright © 2023 The Regents of the University of California
Permission to use, copy, modify and distribute any part of ALEDB for educational, research and non-profit
purposes, without fee, and without a written agreement is hereby granted, provided that the above
copyright notice, this paragraph and the following three paragraphs appear in all copies.
Those desiring to incorporate ALEDB Models into commercial products or use for commercial purposes should
contact Adam Feist at afeist@ucsd.edu and he can inform you about the appropriate tech transfer
contacts.
In no event shall the University of California be liable to any party for direct, indirect, special,
incidental, or consequential damages, including lost profits, arising out of the use of ALEDB, even if
the University of California has been advised of the possibility of such damage.
ALEDB provided herein is on an "as is" basis, and the University of California has no obligation to
provide maintenance, support, updates, enhancements, or modifications. The University of California
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but not limited to, the implied warranties of merchantability or fitness for a particular purpose, or
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ALEDB is hosted and maintained by the Systems Biology Research Group at the University of
California,
San Diego.
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