Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
2 |
240.8 |
15455571 |
92.9% |
14358225 |
72.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_012967 |
1,003,919 |
G→T |
N52K (AAC→AAA) |
ompF ← |
porin OmpF |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_012967 | 1,003,919 | 0 | G | T | 100.0%
| 564.2
/ NA
| 164 | N52K (AAC→AAA) | ompF | porin OmpF |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (68/96); total (68/96) |
Only 100 of 174 total aligned reads displayed.
GAATTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTGTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCA > NC_012967/1003851‑1003988
|
gAATTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTtttt > 2:2148655/1‑72 (MQ=255)
gAATTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTtttt > 2:7522381/1‑72 (MQ=255)
aaTTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACtttttt > 1:1280467/1‑72 (MQ=255)
aaTTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACtttttt < 2:6904819/72‑1 (MQ=255)
aTTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTc < 1:2396828/72‑1 (MQ=255)
gATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCAcc < 1:811599/72‑1 (MQ=255)
tttGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGt < 2:5422402/72‑1 (MQ=255)
tttGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGt < 1:3785911/72‑1 (MQ=255)
ttGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGtt < 2:1282981/72‑1 (MQ=255)
ttGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGtt < 1:5539319/72‑1 (MQ=255)
tGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTa < 1:1514124/72‑1 (MQ=255)
gAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTAc < 2:4694168/72‑1 (MQ=255)
gAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTAc > 1:247723/1‑72 (MQ=255)
aGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACAGTAACTTTTTTCACCGTTAcc < 1:5554017/72‑1 (MQ=255)
gTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTAccc < 2:5042196/72‑1 (MQ=255)
gTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTAccc > 1:3971716/1‑72 (MQ=255)
ttCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCtt > 2:5047173/1‑72 (MQ=255)
ttCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCtt > 2:7586194/1‑72 (MQ=255)
tCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCtcg > 1:42634/1‑70 (MQ=255)
tCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTg < 2:5596461/72‑1 (MQ=255)
tCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTg < 1:3331416/72‑1 (MQ=255)
tCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTg > 2:2113700/1‑72 (MQ=255)
ccccTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTgg > 2:2523953/1‑72 (MQ=255)
ccccTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTgg > 2:5329164/1‑72 (MQ=255)
ccTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGgag < 1:151468/72‑1 (MQ=255)
cTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGgaga > 1:6112330/1‑72 (MQ=255)
tttAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGaa > 2:4890297/1‑72 (MQ=255)
tttAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGaa < 2:7437271/72‑1 (MQ=255)
ttAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGaaa < 2:4586313/72‑1 (MQ=255)
aaaaCCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAaata > 2:4741099/1‑72 (MQ=255)
aaaaCCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAaata < 1:4984595/72‑1 (MQ=255)
aaaaCCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAaata > 2:5784185/1‑72 (MQ=255)
aaaaCCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAaata > 2:1968246/1‑72 (MQ=255)
aaaCCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGagaaagaa < 1:6438020/72‑1 (MQ=255)
aaaCCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAaataa < 2:3835048/72‑1 (MQ=255)
aaaCCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAaataa > 1:168100/1‑72 (MQ=255)
aaaCCAAGACGGGCATAGGTCATGTCGACATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAaataa > 2:4101996/1‑72 (MQ=255)
aaCCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAaataat > 1:5254698/1‑72 (MQ=255)
ccAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGc > 2:2734116/1‑72 (MQ=255)
aaGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAg > 1:1847470/1‑72 (MQ=255)
aGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGa > 2:1789782/1‑72 (MQ=255)
aGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGa < 2:5201901/72‑1 (MQ=255)
gACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGAc > 2:6214245/1‑72 (MQ=255)
gACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGAc > 2:6474829/1‑72 (MQ=255)
aCGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGAcc > 2:6663771/1‑72 (MQ=255)
aCGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGAcc < 2:6684218/72‑1 (MQ=255)
aCGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGAcc > 1:6171750/1‑72 (MQ=255)
cGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCg > 2:5945126/1‑72 (MQ=255)
cGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCg > 2:6363216/1‑72 (MQ=255)
gggCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGa > 1:3032805/1‑72 (MQ=255)
gggCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGa < 2:4312920/72‑1 (MQ=255)
ggCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGAc < 1:2159285/72‑1 (MQ=255)
gCATAGTTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACa < 1:667079/72‑1 (MQ=255)
cATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAg < 1:7038552/72‑1 (MQ=255)
cATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAg < 1:3640543/72‑1 (MQ=255)
cATAGGTCATGTCGCCATTGCCACCGTAACTNTTTTCANCGTTACCCTTGGAGAAATAATGCAGACCGACAg > 1:443099/1‑72 (MQ=255)
aTAGGTCATGTCGCCATTGCCACNGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGc > 1:4950902/1‑72 (MQ=255)
aTAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGc < 2:5948550/72‑1 (MQ=255)
tAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCt < 2:5547879/72‑1 (MQ=255)
gctCATCTCGCCAGTGCCACCGTAACTTTTTTCGCCGTTACCCTGGGAGAAATAATGCAGGCCGACAGCttt < 2:7177466/70‑1 (MQ=255)
gTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTa > 1:3437094/1‑72 (MQ=255)
tCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTAc > 2:6140874/1‑72 (MQ=255)
tCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTAc < 1:3873829/72‑1 (MQ=255)
cATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTAcc > 2:2923948/1‑72 (MQ=255)
cATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTAcc > 2:3643890/1‑72 (MQ=255)
cATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTAcc > 2:2534175/1‑72 (MQ=255)
gTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTa < 2:3174423/72‑1 (MQ=255)
tCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTAc > 2:3264074/1‑72 (MQ=255)
tCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTAc > 1:7637688/1‑72 (MQ=255)
tCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTAc < 2:5432834/72‑1 (MQ=255)
cGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACa > 1:142721/1‑72 (MQ=255)
gCCGTTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAg < 1:582974/72‑1 (MQ=255)
gCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAg > 2:7402841/1‑72 (MQ=255)
gCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAg < 2:2003491/72‑1 (MQ=255)
cctttGCCACCGTAACTTNTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGa < 1:2996664/69‑1 (MQ=255)
ccATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGa < 1:5734519/72‑1 (MQ=255)
cATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGAt < 2:1425483/72‑1 (MQ=255)
cATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGAt > 2:6588041/1‑72 (MQ=255)
ttGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCt < 1:3077628/72‑1 (MQ=255)
ttGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCt < 1:1598990/72‑1 (MQ=255)
ttGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCt < 2:5706702/72‑1 (MQ=255)
tGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTa > 2:1559097/1‑72 (MQ=255)
tGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTa < 2:4836626/72‑1 (MQ=255)
tGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTa < 2:3410077/72‑1 (MQ=255)
tGCCACCGTAACTTTTTTCACCGNTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTa > 1:4969302/1‑72 (MQ=255)
ccACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACt < 1:1794384/72‑1 (MQ=255)
ccACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACt > 1:2557621/1‑72 (MQ=255)
ccACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACt > 1:2605782/1‑72 (MQ=255)
aCCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACttt < 1:1171314/72‑1 (MQ=255)
cGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTttgt < 1:7001363/72‑1 (MQ=255)
cGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTttgt > 2:5350501/1‑72 (MQ=255)
gTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTttgtt < 1:2627122/72‑1 (MQ=255)
gTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTttgtt < 1:92697/72‑1 (MQ=255)
gTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTttgtt < 1:4154034/72‑1 (MQ=255)
gTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTttgtt < 2:5291106/72‑1 (MQ=255)
tAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTttgttg > 1:3741166/1‑72 (MQ=255)
tAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTttgttg < 2:1852479/72‑1 (MQ=255)
tAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTttgtcg < 1:430275/72‑3 (MQ=255)
aaCTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGc > 1:4340551/1‑72 (MQ=255)
aCTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGcc < 2:3962639/72‑1 (MQ=255)
|
GAATTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTGTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCA > NC_012967/1003851‑1003988
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGATCGGAATTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTGTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTAT > NC_012967/1003844‑1003998
|
gtctTCGGAATTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTT > SRR333730.7977276/5‑80 (MQ=60)
gtcTCGGAATTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTC > SRR333730.3363863/4‑80 (MQ=60)
gtctAATTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACC > SRR333730.1419511/5‑80 (MQ=60)
CGGAATTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCAgac < SRR333730.2634900/80‑4 (MQ=60)
AATTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCagac < SRR333730.896221/80‑5 (MQ=60)
AATTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCagac < SRR333730.2693590/80‑5 (MQ=60)
gtctATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTAC > SRR333730.2610256/5‑80 (MQ=60)
ATTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGAATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGagac < SRR333730.1667859/80‑5 (MQ=60)
gtctTTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACC > SRR333730.2867065/5‑80 (MQ=60)
TTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTagac < SRR333730.4159515/80‑5 (MQ=60)
TGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTAgac < SRR333730.4597141/80‑4 (MQ=60)
TGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTAgac < SRR333730.6076376/80‑4 (MQ=60)
gtcTTGAGTTTCCCCTTTAAAACCAAGACNGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCT > SRR333730.941652/4‑80 (MQ=60)
GATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTAagac < SRR333730.1672542/80‑5 (MQ=60)
gtcTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTT > SRR333730.274385/4‑80 (MQ=60)
gtctAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTG > SRR333730.5271216/5‑80 (MQ=60)
TTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACAGTAACTTTTTTCACCGTTACCagac < SRR333730.6092207/80‑5 (MQ=60)
gtctGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGG > SRR333730.4361668/5‑80 (MQ=60)
gtctTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGA > SRR333730.1917043/5‑80 (MQ=60)
gtcTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTCGGAGA > SRR333730.47915/4‑80 (MQ=60)
AGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGagac < SRR333730.4205609/80‑5 (MQ=60)
AGTCTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGagac < SRR333730.3663101/80‑5 (MQ=60)
ccTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAC < SRR333730.5413148/78‑1 (MQ=60)
gtctCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAAGTTTCTTCACCGTTACCCTTGGAGAAA > SRR333730.2850029/5‑80 (MQ=60)
TTTCCCCTTGAAGACCAAGCCATGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTATCCTTGGAagac < SRR333730.5944785/80‑5 (MQ=48)
TTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAgac < SRR333730.168645/80‑4 (MQ=60)
gtctCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATA > SRR333730.6697708/5‑80 (MQ=60)
gtCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAAT > SRR333730.1554532/3‑80 (MQ=60)
CCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAgac < SRR333730.2183157/80‑4 (MQ=60)
gtcTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGC > SRR333730.7296328/4‑80 (MQ=60)
CTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAAgac < SRR333730.5471825/80‑4 (MQ=60)
gtctAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCA > SRR333730.1761715/5‑80 (MQ=60)
gtctAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCA > SRR333730.186875/5‑80 (MQ=60)
TTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAAgaaagac < SRR333730.7050404/80‑8 (MQ=60)
gtctAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAG > SRR333730.5765888/5‑80 (MQ=60)
TTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAAT‑‑AGAC < SRR333730.8366961/80‑1 (MQ=60)
TAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATG‑AGAC < SRR333730.3681269/80‑1 (MQ=60)
AAAACCAGGCCGGGCATAGGTCCTGTAGCCCTTGCCACAGTAACTTTTTTAACCGTTACCCTTGGAGAAATAATGCAGAC < SRR333730.705753/80‑1 (MQ=39)
gtctAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCG > SRR333730.2038717/5‑80 (MQ=60)
ACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGAagac < SRR333730.6568400/80‑5 (MQ=60)
gtctACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACA > SRR333730.6762111/5‑80 (MQ=60)
gtctCGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAG > SRR333730.616877/5‑80 (MQ=60)
gtctGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAag > SRR333730.3339265/5‑78 (MQ=60)
GACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGac < SRR333730.2378427/80‑3 (MQ=60)
ACGGGCATAGTTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAagac < SRR333730.734504/80‑5 (MQ=60)
ACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACagacaagac < SRR333730.6858126/80‑10 (MQ=60)
gtctCATAGGTCATGTCGCCATTGCCACCGTAACTNTTTTCANCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTT > SRR333730.489228/5‑80 (MQ=60)
CGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGagac < SRR333730.3999193/80‑5 (MQ=60)
CGGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGagac < SRR333730.7704458/80‑5 (MQ=60)
gtctATAGGTCATGTCGCCATTGCCACNGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTA > SRR333730.5434702/5‑80 (MQ=60)
GGGCATAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCagac < SRR333730.4459122/80‑5 (MQ=60)
gtctGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGT > SRR333730.3777721/5‑80 (MQ=60)
TAGGTCATGTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACagac < SRR333730.4255098/80‑5 (MQ=60)
gtctTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGAT > SRR333730.8351056/5‑80 (MQ=60)
gtcTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATC > SRR333730.158947/4‑80 (MQ=60)
ATCTCNCCATTCCCACCGTAACTTTTTTCACNGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAagac < SRR333730.842112/80‑5 (MQ=60)
TGTCGCCGTTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGAgac < SRR333730.642758/80‑4 (MQ=60)
tccgcctTTGCCACCGTAACTTNTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGAagac < SRR333730.3299707/73‑5 (MQ=60)
GTCTCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTA > SRR333730.2985933/1‑80 (MQ=60)
GTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGAagac < SRR333730.3364580/80‑5 (MQ=60)
GTCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGAagac < SRR333730.6288582/80‑5 (MQ=60)
TCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATagac < SRR333730.4111744/80‑5 (MQ=60)
TCGCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATagac < SRR333730.4781029/80‑5 (MQ=60)
gtctATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACT > SRR333730.4753924/5‑80 (MQ=60)
cccaattcCCACCGTAGCTTTTTTCACCGTTACCCTTGAAGAAAAAATGCAGACCGACAGCTTTACCGTACAGATCagac < SRR333730.7370365/72‑5 (MQ=60)
GCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTAgac < SRR333730.3388190/80‑4 (MQ=60)
GCCATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTAgac < SRR333730.1764893/80‑4 (MQ=60)
gtcTTGCCACCGTAACTTTTTTCACCGNTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTT > SRR333730.5454989/4‑80 (MQ=60)
CATTGCCGCCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACagac < SRR333730.642609/80‑5 (MQ=60)
gtctCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGT > SRR333730.2863674/5‑80 (MQ=60)
gtctCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGT > SRR333730.5471281/5‑80 (MQ=60)
gtctCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGT > SRR333730.2810146/5‑80 (MQ=60)
ATTGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTagac < SRR333730.1979731/80‑5 (MQ=60)
ATGGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTagac < SRR333730.3493707/80‑5 (MQ=60)
TGCCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTagac < SRR333730.1299247/80‑5 (MQ=60)
gtctCCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGC > SRR333730.5472800/5‑80 (MQ=60)
CCACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTagac < SRR333730.7663800/80‑5 (MQ=60)
CACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTagac < SRR333730.2887623/80‑5 (MQ=60)
CACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTagac < SRR333730.4561343/80‑5 (MQ=60)
CACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTagac < SRR333730.103563/80‑5 (MQ=60)
gtctTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCAT > SRR333730.4110338/5‑80 (MQ=60)
ACCGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTcgagac < SRR333730.475083/80‑7 (MQ=60)
gtcTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCATC > SRR333730.4763748/4‑80 (MQ=60)
CGTAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCAgac < SRR333730.4008464/80‑4 (MQ=60)
GTAACTGTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCAagac < SRR333730.183927/80‑5 (MQ=60)
TAACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCATagac < SRR333730.4585571/80‑5 (MQ=60)
AACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCATCagac < SRR333730.5274648/80‑5 (MQ=60)
AACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCATCagac < SRR333730.4874024/80‑5 (MQ=60)
ACTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTagac < SRR333730.3794229/80‑5 (MQ=60)
ACTTTTTTCACCGTTACCCTTGGAGAAATAAGGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTagac < SRR333730.2421354/80‑5 (MQ=60)
CTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCaatctcagac < SRR333730.5872706/80‑11 (MQ=60)
CTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTagac < SRR333730.5218277/80‑5 (MQ=60)
CTTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCAATCTTagac < SRR333730.5872707/80‑5 (MQ=60)
TTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTagac < SRR333730.3389731/80‑5 (MQ=60)
TTTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTagac < SRR333730.1882833/80‑5 (MQ=60)
TTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGagac < SRR333730.7755749/80‑5 (MQ=60)
TTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGagac < SRR333730.5556658/80‑5 (MQ=60)
GTCTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTAT > SRR333730.2093474/1‑80 (MQ=60)
|
CAGATCGGAATTGATTTGAGTTTCCCCTTTAAAACCAAGACGGGCATAGGTCATGTCGCCATTGCCACCGTAACTGTTTTCACCGTTACCCTTGGAGAAATAATGCAGACCGACAGCTTTACCGTACAGATCTACTTTGTTGCCATCTTTGTTAT > NC_012967/1003844‑1003998
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
