Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
1 |
227.7 |
15056119 |
94.1% |
14167807 |
72.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_012967 |
3,482,567 |
C→T |
Q295* (CAA→TAA) |
malT → |
HTH‑type transcriptional regulator MalT |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_012967 | 3,482,567 | 0 | C | T | 99.5%
| 619.6
/ ‑4.8
| 188 | Q295* (CAA→TAA) | malT | HTH‑type transcriptional regulator MalT |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (89/98); minor base G (1/0); total (90/98) |
| Fisher's exact test for biased strand distribution p-value = 4.79e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 |
Only 100 of 194 total aligned reads displayed.
TTGAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGCAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGG > NC_012967/3482498‑3482635
|
ttGAANAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTaa > 2:404825/1‑72 (MQ=255)
ttGAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTaa > 2:1242628/1‑72 (MQ=255)
ttGAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTaa > 1:4632338/1‑72 (MQ=255)
ttGAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTaa > 1:4606481/1‑72 (MQ=255)
gAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAAt > 1:5799098/1‑72 (MQ=255)
aaaGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATgc < 1:1183581/72‑1 (MQ=255)
aaaGCGCCATTTTGCGCTCAATGAAAGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATgc > 2:3696014/1‑72 (MQ=255)
aaaGCGCCATTTGTCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATgc < 2:2657589/72‑1 (MQ=255)
aGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATgcgc < 1:7126652/72‑1 (MQ=255)
aGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATgcgc > 2:3622339/1‑72 (MQ=255)
aGCCCCATTCTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATgcgc < 1:2820249/72‑1 (MQ=255)
cgcCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCt < 2:7340949/72‑1 (MQ=255)
cgcCATTCTGCGCTGAATGACCGATGCCGTCCTCCACTGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCt < 2:5982175/72‑1 (MQ=255)
gcCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTc > 1:4524503/1‑72 (MQ=255)
gcCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTc < 1:1631289/72‑1 (MQ=255)
gcCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTc < 2:1460148/72‑1 (MQ=255)
gcCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTc < 1:3779493/72‑1 (MQ=255)
ccATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCg < 1:1915685/72‑1 (MQ=255)
ccATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCg < 2:2541263/72‑1 (MQ=255)
ccATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCCCCTCg > 2:6028419/1‑72 (MQ=255)
cATTTTGCGCTCAATGANCGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGa > 1:658357/1‑72 (MQ=255)
cATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGa < 2:6042777/72‑1 (MQ=255)
aTTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGaa < 2:6081200/72‑1 (MQ=255)
aTTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGGAAATGCGCCTCGaa > 2:5678382/1‑72 (MQ=255)
ttttGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAag < 2:3513088/72‑1 (MQ=255)
tttGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAaga > 1:1813558/1‑72 (MQ=255)
tttGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAaga < 2:441604/72‑1 (MQ=255)
ttGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAagag < 2:3770982/72‑1 (MQ=255)
tGCGCTCAATGAACGCTGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAgaga > 1:1733747/1‑72 (MQ=255)
tGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAgaga > 2:5131669/1‑72 (MQ=255)
ngcgcTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAgaga < 1:863672/71‑1 (MQ=255)
cgcTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGAtt < 2:7378963/72‑1 (MQ=255)
cgcTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGAtt > 1:6957101/1‑72 (MQ=255)
gcTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTg > 2:1019636/1‑72 (MQ=255)
cTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAANGGGTAAATGCGCCTCGAAGGNGTTGa > 2:840308/1‑72 (MQ=255)
cTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGa > 1:4840341/1‑72 (MQ=255)
cTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGa < 1:383220/72‑1 (MQ=255)
cTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGa > 1:5288946/1‑72 (MQ=255)
cAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGc > 1:6874335/1‑72 (MQ=255)
cAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGc > 1:7034333/1‑72 (MQ=255)
cAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGc < 2:4123196/72‑1 (MQ=255)
tGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTc < 1:6389526/72‑1 (MQ=255)
tGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTc < 1:6049261/72‑1 (MQ=255)
gAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGCGCGTCa > 2:4005558/1‑72 (MQ=255)
gAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCa < 1:6740639/72‑1 (MQ=255)
gAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCa > 2:6377200/1‑72 (MQ=255)
gAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCa < 1:3715391/72‑1 (MQ=255)
gAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCa < 1:7520833/72‑1 (MQ=255)
gAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCa < 2:4312042/72‑1 (MQ=255)
aaCGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAg > 2:3137714/1‑72 (MQ=255)
cGATGCACTCATCACACGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAggg > 2:4487073/1‑72 (MQ=255)
gATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAgggg < 2:675572/72‑1 (MQ=255)
aTGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGc < 2:488647/72‑1 (MQ=255)
gCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTGAGGGGcgg > 1:4143370/1‑70 (MQ=255)
gCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTg > 1:5233445/1‑72 (MQ=255)
gCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGCCTg > 2:3203191/1‑72 (MQ=255)
aCTTATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGtt > 2:5526549/1‑72 (MQ=255)
aCTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGtt > 1:7409265/1‑72 (MQ=255)
cTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGttt > 2:1710285/1‑72 (MQ=255)
cTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGttt < 1:4414861/72‑1 (MQ=255)
tcatcaCCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGtttt > 2:5836433/1‑72 (MQ=255)
catcaCCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGtgttt > 2:1756891/1‑72 (MQ=255)
atcaCCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGtttttt > 2:2292592/1‑71 (MQ=255)
atcaCCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTa > 2:6671111/1‑72 (MQ=255)
atcaCCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTa < 1:6483566/72‑1 (MQ=255)
atcaCCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTa > 2:2818891/1‑72 (MQ=255)
caCCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACa > 1:6924984/1‑72 (MQ=255)
ccGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCg < 1:7234582/72‑1 (MQ=255)
ccGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCg < 1:6671112/72‑1 (MQ=255)
cGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTTCAGCgg > 2:3324285/1‑72 (MQ=255)
cGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCgg < 1:3968300/72‑1 (MQ=255)
gtgtGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCgga < 2:7069161/72‑1 (MQ=255)
tgtgACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCggat < 2:6624296/72‑1 (MQ=255)
tgtgACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCggat < 1:4179629/72‑1 (MQ=255)
tgtgACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGCCAGGGGCTGTTTTTACAGCggat > 1:2069544/1‑72 (MQ=255)
gtgACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCggatg < 1:1973408/72‑1 (MQ=255)
tgACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCggatgg < 2:5276390/72‑1 (MQ=255)
gACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCggatgga < 1:1165567/72‑1 (MQ=255)
gACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCggatgga < 1:7335409/72‑1 (MQ=255)
gACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTAAAGGgggtggg > 2:177868/1‑71 (MQ=255)
aCCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCggatgggt > 2:5429818/1‑70 (MQ=255)
aCCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCggatggat < 2:1648806/72‑1 (MQ=255)
cGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGgatga < 2:6553874/72‑1 (MQ=255)
cGGCGAAGAAAACGGGTAAANGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGgatga < 1:2850560/72‑1 (MQ=255)
gCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGGTGATa > 2:471921/1‑72 (MQ=255)
gCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATa > 1:5868700/1‑72 (MQ=255)
cGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATAc > 1:4747948/1‑72 (MQ=255)
gaagaaAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATAcc > 1:6304297/1‑72 (MQ=255)
gaagaaAACGGGTAAATCCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGGTGGGAGATaac > 1:6906547/1‑70 (MQ=255)
aagaaAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGGTGATAACg > 1:4668635/1‑72 (MQ=255)
gaaAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGc < 1:2622795/72‑1 (MQ=255)
gaaAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGc < 2:2726294/72‑1 (MQ=255)
aaaaCGGGTAAATGCGCCTGGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCg < 2:1538577/72‑1 (MQ=255)
aaaaCGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGGTGATACCGGCg > 1:6098044/1‑72 (MQ=255)
aaaaCGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGGTGAAAACgggg > 2:108307/1‑70 (MQ=255)
aaaCGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGa < 1:4120366/72‑1 (MQ=255)
aaaCGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGa < 2:201139/72‑1 (MQ=255)
aaCGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACATCGGATGGGTGATACCGGCGAg > 2:451450/1‑72 (MQ=255)
cGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTg > 1:2785606/1‑72 (MQ=255)
gggTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTgg < 1:5505740/72‑1 (MQ=255)
|
TTGAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGCAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGG > NC_012967/3482498‑3482635
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTCTGTTGAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGCAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGC > NC_012967/3482493‑3482641
|
TTCTGTTGAAAAGCGCCATTTTGCGCTCAATGAACGAATCACTCCTCACCCCTATGGCCGGCGAAGAAAACGGGG > SRR333727.2739259/1‑75 (MQ=51)
CTGTTGAAAAGCGCCATATTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAA > SRR333727.639748/1‑75 (MQ=60)
cgtttAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAA > SRR333727.3198254/6‑75 (MQ=60)
TTGAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATG > SRR333727.4649476/1‑75 (MQ=60)
TTGAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATG > SRR333727.4623531/1‑75 (MQ=60)
TGAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGC < SRR333727.1188287/75‑1 (MQ=60)
TGAAAAGCGCCATTGTGCGCTCAATGAACGATGCACTCATCACCAGTGTGACCGGCGAAGAAAACGGGTAAATGC < SRR333727.4765751/75‑1 (MQ=60)
TAAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGC < SRR333727.4635525/75‑1 (MQ=60)
GAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCG > SRR333727.5820453/1‑75 (MQ=60)
AAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGggg > SRR333727.202052/1‑72 (MQ=60)
AAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGC < SRR333727.7151724/75‑1 (MQ=60)
AAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGC > SRR333727.6444309/1‑75 (MQ=60)
AAAAGCCCCATTCTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGC < SRR333727.2831070/75‑1 (MQ=60)
AAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCC > SRR333727.4236295/1‑75 (MQ=60)
AAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCC < SRR333727.6640104/75‑1 (MQ=60)
AGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTC < SRR333727.3794322/75‑1 (MQ=60)
AGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTC < SRR333727.1637931/75‑1 (MQ=60)
GCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCG < SRR333727.1923762/75‑1 (MQ=60)
GCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAA > SRR333727.1703071/1‑75 (MQ=60)
GCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAA > SRR333727.4467473/1‑75 (MQ=60)
GCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAA > SRR333727.4541252/1‑75 (MQ=60)
CCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAG > SRR333727.5895365/1‑75 (MQ=60)
CCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAG < SRR333727.3751826/75‑1 (MQ=60)
CCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAG < SRR333727.6781799/75‑1 (MQ=60)
CATTTTGCGCTCAATGANCGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGA > SRR333727.660705/1‑75 (MQ=60)
CATTTAGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGA < SRR333727.7037915/75‑1 (MQ=60)
TTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGA < SRR333727.7294293/75‑1 (MQ=60)
TTTNGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGA < SRR333727.866771/75‑1 (MQ=60)
TTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGAT < SRR333727.5827432/75‑1 (MQ=60)
TTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGAT > SRR333727.1821369/1‑75 (MQ=60)
TTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATT < SRR333727.5263340/75‑1 (MQ=60)
TGCGCTCAATGAACGCTGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTG > SRR333727.1741045/1‑75 (MQ=60)
GCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGA < SRR333727.384704/75‑1 (MQ=60)
GCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGA > SRR333727.1775968/1‑75 (MQ=60)
GCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGA < SRR333727.1896260/75‑1 (MQ=60)
CGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAG > SRR333727.6981659/1‑75 (MQ=60)
CTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCG > SRR333727.5308432/1‑75 (MQ=60)
CTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCG > SRR333727.4858347/1‑75 (MQ=60)
CAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTC < SRR333727.6411956/75‑1 (MQ=60)
CAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTC < SRR333727.6071045/75‑1 (MQ=60)
CAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTC > SRR333727.6898550/1‑75 (MQ=60)
CAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTC < SRR333727.4165810/75‑1 (MQ=60)
CAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTC > SRR333727.7059143/1‑75 (MQ=60)
AATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCA < SRR333727.3730076/75‑1 (MQ=60)
AATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCA < SRR333727.6764295/75‑1 (MQ=60)
AATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCA < SRR333727.7547679/75‑1 (MQ=60)
TGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGG < SRR333727.6287219/75‑1 (MQ=60)
GAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGG > SRR333727.78584/1‑75 (MQ=60)
GATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTG < SRR333727.2443042/75‑1 (MQ=60)
ATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGT < SRR333727.6973552/75‑1 (MQ=60)
ATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGT > SRR333727.6118475/1‑75 (MQ=60)
GCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTGAGGGGCGGTTT > SRR333727.4159015/1‑75 (MQ=60)
GCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTT < SRR333727.4431269/75‑1 (MQ=60)
GCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTT > SRR333727.5252766/1‑75 (MQ=60)
ACTCNTCACCCGTGTGACCGGCGAAGAAAANGGGTAAATGCGCCTCGAAGAGATTGAGAGTCAGGGGCTGTTTTT < SRR333727.751450/75‑1 (MQ=60)
ACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTT > SRR333727.7435427/1‑75 (MQ=60)
ACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTT < SRR333727.1944031/75‑1 (MQ=60)
ACTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGGTTTT > SRR333727.4125148/1‑75 (MQ=60)
CTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTA < SRR333727.3134280/75‑1 (MQ=60)
CTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTA < SRR333727.6506247/75‑1 (MQ=60)
CTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTA < SRR333727.693573/75‑1 (MQ=60)
CTCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTA < SRR333727.6928376/75‑1 (MQ=60)
TCATCACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTAC > SRR333727.6764017/1‑75 (MQ=60)
TCATCACACGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTAC < SRR333727.3873761/75‑1 (MQ=60)
tatccCCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACA < SRR333727.2829707/70‑1 (MQ=60)
TCACCCGTGTGACCGGCGAAGAAAACGTGTAAATGCGCCTCGAAGAGATTGAGCGTCCGGGGCTGTTTTTACAGC > SRR333727.6606176/1‑75 (MQ=60)
CACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCG > SRR333727.6949401/1‑75 (MQ=60)
CACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCG < SRR333727.6694468/75‑1 (MQ=60)
CACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCG < SRR333727.7259981/75‑1 (MQ=60)
ACCCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGG < SRR333727.3983541/75‑1 (MQ=60)
CCGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGAT < SRR333727.4195359/75‑1 (MQ=60)
CGTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATG < SRR333727.1981629/75‑1 (MQ=60)
GTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCATGTGCTGGTTTTACAGggggcgg > SRR333727.2746685/1‑68 (MQ=60)
GTGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCNGATGG < SRR333727.719294/75‑1 (MQ=60)
TGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGA < SRR333727.1170214/75‑1 (MQ=60)
TGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGA < SRR333727.7361260/75‑1 (MQ=60)
TGTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGCCAGGGGCTGTTTTTACAGCGGATGGG > SRR333727.2077972/1‑75 (MQ=60)
GTGACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGAT < SRR333727.1418896/75‑1 (MQ=60)
GACCGGCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGGTGA > SRR333727.3801179/1‑75 (MQ=60)
GACCGGCGAAGAAAACGGGTAAANGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGA < SRR333727.2861525/75‑1 (MQ=60)
GCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCG < SRR333727.4594570/75‑1 (MQ=60)
GCGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCG > SRR333727.5890165/1‑75 (MQ=60)
CGAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGG > SRR333727.4765560/1‑75 (MQ=60)
GAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGC < SRR333727.2632718/75‑1 (MQ=60)
GAAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGC > SRR333727.6326540/1‑75 (MQ=60)
GAAGAAAACGGGTAAATCCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGgtgggagataaccgc > SRR333727.6930902/1‑60 (MQ=60)
AAGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGGTGATAACGGCG > SRR333727.4685920/1‑75 (MQ=60)
AGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGA < SRR333727.4135943/75‑1 (MQ=60)
AGAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGA < SRR333727.7384974/75‑1 (MQ=60)
GAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGgttttttagggggagggtggtaacgggggg > SRR333727.856728/1‑45 (MQ=60)
GAAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGGTGGTAACGGCGAG > SRR333727.4705148/1‑75 (MQ=60)
AAGACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGT < SRR333727.2842004/75‑1 (MQ=60)
AAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGGTGATACCGGCGAGT > SRR333727.6119908/1‑75 (MQ=60)
AAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGT > SRR333727.7105169/1‑75 (MQ=60)
AAAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATAACGGCGAGG > SRR333727.505158/1‑75 (MQ=60)
AAACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTG < SRR333727.4650302/75‑1 (MQ=60)
GACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGG < SRR333727.5526183/75‑1 (MQ=60)
AACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGG > SRR333727.5519139/1‑75 (MQ=60)
ACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGT > SRR333727.5582176/1‑75 (MQ=60)
ACGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGT < SRR333727.5962941/75‑1 (MQ=60)
CGGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGGT > SRR333727.2796257/1‑75 (MQ=60)
GGGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTC < SRR333727.1608479/75‑1 (MQ=60)
GGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCT < SRR333727.5953007/75‑1 (MQ=60)
GGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCT > SRR333727.3289345/1‑75 (MQ=60)
GGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCT < SRR333727.5699541/75‑1 (MQ=60)
GGTAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCT < SRR333727.2245525/75‑1 (MQ=60)
TAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGC < SRR333727.4205029/75‑1 (MQ=60)
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TTCTGTTGAAAAGCGCCATTTTGCGCTCAATGAACGATGCACTCATCACCCGTGTGACCGGCGAAGAAAACGGGCAAATGCGCCTCGAAGAGATTGAGCGTCAGGGGCTGTTTTTACAGCGGATGGATGATACCGGCGAGTGGTTCTGC > NC_012967/3482493‑3482641
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
