New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2478415 =	36 (0.190)	5 (0.030)	5/196	16.6	15.4%	coding (112/444 nt)	PP_2172	conserved exported protein of unknown function
	?	AE015451	= 2478405	25 (0.160)					coding (102/444 nt)	PP_2172	conserved exported protein of unknown function
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCGAACAAAAAATGAAAAAACCTTTGGTTGCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGAAACGGTGCCGGACATGGCGGTGGCATGGGAGGGCATAGTGGAAGCGGGAAGGGCCTTGGAAGTGATCACGCTGGAAA  >  AE015451/2478292‑2478536                                                                                                                            |                                                                                                                          gCCGAACAAAAAATGAAAAAACCTTTGGTTGCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCACGggtggtggtg                                                                                                                           >  2:1961353/1‑124 (MQ=255)    gAACAAAAAATGAAAAAACCTTTGGTTGCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCTCCGATATCTCCCCGATCAGTTCCGCCTATGTCAAGggtggtggtgg                                                                                                                          <  2:1961298/122‑1 (MQ=255)     aaCAAAAAATGAAAAAACCTTTGGTTGCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGggtggtggtg                                                                                                                           >  2:1961372/1‑120 (MQ=255)      aCAAAAAATGAAAAAACCTTTGGTTGCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGggtggtggtggtggt                                                                                                                      <  2:1961299/124‑1 (MQ=255)        aaaaaaTGAAAAAACCTTTGGTTGCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGggtggtggtggtggtg                                                                                                                     >  1:1961402/1‑123 (MQ=255)         aaaaaTGAAAAAACCTTTGGTTGCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGggtggtggtggtggtg                                                                                                                     >  2:1961341/1‑122 (MQ=255)         aaaaaTGAAAAAACCTTTGATTGCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGggtggtggtggtggtgg                                                                                                                    <  2:1961300/123‑1 (MQ=255)           aaaTGAAAAAACCTTTGGTTGCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGggtggtggtggtggtggtgg                                                                                                                 <  1:1961301/124‑1 (MQ=255)           aaaTGAAAAAACCTTTGGTTGCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGggtggtggtggtggt                                                                                                                      >  1:1961397/1‑119 (MQ=255)            aaTGAAAAAACCTTTGGTTGCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGggtggtggtggtggtggtggt                                                                                                                >  2:1961345/1‑124 (MQ=255)             aTGAAAAAACCTTTGGTTGCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGggtggtggtggtggtggtggtg                                                                                                               >  2:1961329/1‑124 (MQ=255)                  aaaaCCTTTGGTTGCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGggtggtggtggtggtggtggtggtggt                                                                                                          >  1:1961338/1‑124 (MQ=255)                          tGGTTGCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGGGTGGTGGTGGTGGTGGTGGTGGTggtggcggtg                                                                                                   >  1:1961380/1‑123 (MQ=255)                           ggTTGCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGggtggtggtggtggtggtggcggtggcggtgg                                                                                                     <  1:1961303/120‑7 (MQ=255)                               gCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGggtggtggtggtggtggtggtggtgg                                                                                                           <  2:1961304/110‑1 (MQ=255)                                 tGTCTTTGCTTGTGCATTGGCACTCGGGATGTCGGCATTCTGGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGGGTGGTGGTGGTGGTGGTGGTGGTggtggcggtggc                                                                                                 >  1:1961358/1‑118 (MQ=255)                                 tGTCTTTGCTTGTGCATGGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGcggtggcggtgg                                                                                            <  1:1961305/123‑1 (MQ=255)                                  gtttttGCTTGGGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGGGTGGTGGTGGTGGTGGTGGTGGTggtggcgg                                                                                                     <  2:1961306/110‑1 (MQ=255)                                   tCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGGGTGGTGGTGGTGGTGGTGGTGGTggtggcggtggc                                                                                                 <  1:1961307/116‑1 (MQ=255)                                               cATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGaaa                                                                             >  2:1961370/1‑124 (MQ=255)                                                     cACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGGGTGGTGGTGGTGGTGGTGGcggtggcggtgg                                                                                                     >  2:1961381/1‑94 (MQ=255)                                                       cTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGAAACgg                                                                          >  2:1961391/1‑119 (MQ=255)                                                          gggATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGAAACgg                                                                          <  1:1961310/116‑1 (MQ=255)                                                          gggATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAG‑‑‑GGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGAAACGGTGCCGGACATg                                                               >  1:1961336/1‑124 (MQ=255)                                                                         ttGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGAAACGGTGCCGGACATGGCGGTgg                                                        >  1:1961374/1‑119 (MQ=255)                                                                           gCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAG‑‑‑‑‑‑‑‑‑GGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGAAACGGTGCCGGACATGGCGGTGGCAt                                                     <  2:1961311/111‑1 (MQ=255)                                                                             ccgccgATATCTCCCCGATCAGTTCCGCCTATGCCAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGAAACGGTGc                                                                       >  2:1961396/1‑100 (MQ=255)                                                                             ccgccgATATCTCCCCGATCAGTTCCGCCTATGCCAAG‑‑‑‑‑‑‑‑‑GGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGAAACGGTGCCGGACATGGCGGTGGCATGGGAggg                                              <  2:1961312/116‑1 (MQ=255)                                                                                   atatCTCCCCGATCAGTTCCGCCTATGCCAAGGgtggtggtggtggtggtggtggtggtg                                                                                                         <  1:1961314/60‑1 (MQ=255)                                                                                   atatCTCCCCGATCAGTTCCGCCTATGCCAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGAAACGGTGCCGGACAt                                                                <  2:1961315/101‑1 (MQ=255)                                                                                   atatCTCCCCGATCAGTTCCGCCTATGCCAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGAAACGGTGCCGGACATgg                                                              <  1:1961313/103‑1 (MQ=255)                                                                                        tcCCCGATCAGTTCCGCCTATGCCAAG‑‑‑GGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGAAACg                                                                           >  2:1961548/1‑82 (MQ=38)                                                                                          cccGATCAGTTCCGCCTATGCCAAGGGGGGTGGTGGTGGTGGTGGTGGTGGCGGCGGTGGCGGTGGTCATGGCGGTGGAAACGGTGCCGGACATGGCGGTGGCATggg                                                  <  1:1961316/108‑1 (MQ=255)                                                                                               tCAGTTCCGCCTATGCCAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGAAACGGTGCCGGACATGGCGGTGGCATGGGAGGGCATAGTGGAAGCGGGaa                             >  1:1961368/1‑124 (MQ=255)                                                                                                        ccTAGGCCAAGGGGGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGAAACGGTGCCGGACATGGCGGTGGCATGGGAGGGCATAGTGGAAGCGGGAAGGGCCTTgg                    <  1:1961318/124‑1 (MQ=255)                                                                                                              ccAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGAAACGGTGCCGGACATGGCGGTGGCATGGGAGGGCATAGTGGAAGCGGGAAGGGCCTTGGAAGt                >  1:1961371/1‑122 (MQ=255)                                                                                                               cAAGGGGGGTGGTGGTGGTGGGGGTGGTGGtggcggtggcgg                                                                                               <  2:1961319/42‑1 (MQ=18)                                                                                                                aaGGGTGGGGGGGGTGGGGGTGGGGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGAAACGGTGCCGGACATGGCGGTGGCATGGGAGGGCATAGTGGAAGCGGGAAGGGCCt                       <  2:1961320/113‑1 (MQ=255)                                                                                                                        tggtggtggtggtggtggtggtggCGGTGGCGGTGGTCATGGCGGTGGAAACGGTGCCGGACATGGCGGTGGCATGGGAGGGCATAGTGGAAGCGGGAAGGGCCTTGGAAGTGATCACGCTg      >  2:1961429/1‑122 (MQ=255)                                                                                                                          gtggtggtggtggtggtggtggCGGTGGCGGTGGTCATGGCGGTGGAAACGGTGCCGGACATGGCGGTGGCATGGGAGGGCATAGTGGAAGCGGGAAGGGCCTTGGAAGTGATCACGCTGGaaa  >  1:1961363/1‑124 (MQ=255)                                                                                                                            |                                                                                                                          GCCGAACAAAAAATGAAAAAACCTTTGGTTGCTGTCTTTGCTTGTGCATTGGCACTCGGGATGACGGCATTCTTGCCCGCCGATATCTCCCCGATCAGTTCCGCCTATGCCAAGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGTCATGGCGGTGGAAACGGTGCCGGACATGGCGGTGGCATGGGAGGGCATAGTGGAAGCGGGAAGGGCCTTGGAAGTGATCACGCTGGAAA  >  AE015451/2478292‑2478536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.