mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 41 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AE015451 | 4,808,171 | 0 | C | . | 72.2% | ‑1.6 / 20.8 | 18 | intergenic (‑280/‑275) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,172 | 0 | C | . | 72.2% | ‑1.5 / 20.8 | 18 | intergenic (‑281/‑274) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,173 | 0 | G | . | 72.2% | ‑1.7 / 21.0 | 18 | intergenic (‑282/‑273) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,174 | 0 | C | . | 72.2% | ‑1.1 / 20.3 | 18 | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,175 | 0 | C | . | 72.2% | ‑1.4 / 20.6 | 18 | intergenic (‑284/‑271) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,741,229 | 0 | A | C | 70.7% | 73.5 / 37.3 | 41 | intergenic (+466/+287) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,231 | 0 | C | G | 68.3% | 58.5 / 41.8 | 41 | intergenic (+468/+285) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,234 | 0 | C | T | 68.3% | 49.4 / 37.2 | 41 | intergenic (+471/+282) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,255 | 0 | C | T | 65.1% | 59.3 / 34.2 | 43 | intergenic (+492/+261) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,257 | 0 | A | C | 65.1% | 56.5 / 50.6 | 43 | intergenic (+494/+259) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,260 | 0 | C | G | 65.1% | 41.8 / 58.1 | 43 | intergenic (+497/+256) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,261 | 0 | A | C | 65.1% | 93.8 / 74.1 | 43 | intergenic (+498/+255) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,808,169 | 0 | C | . | 65.0% | 23.5 / 32.6 | 20 | intergenic (‑278/‑277) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,808,170 | 0 | G | . | 65.0% | 21.3 / 32.3 | 20 | intergenic (‑279/‑276) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| * | AE015451 | 4,741,236 | 0 | G | T | 63.4% | 28.9 / 57.7 | 41 | intergenic (+473/+280) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,237 | 0 | C | G | 63.4% | 48.3 / 55.4 | 41 | intergenic (+474/+279) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,239 | 0 | A | G | 63.4% | 28.5 / 50.9 | 41 | intergenic (+476/+277) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,243 | 0 | G | T | 63.4% | 24.6 / 57.0 | 41 | intergenic (+480/+273) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,244 | 0 | C | G | 63.4% | 27.0 / 68.4 | 41 | intergenic (+481/+272) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | AE015451 | 4,741,245 | 0 | A | C | 63.4% | 89.8 / 73.4 | 41 | intergenic (+482/+271) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 4808174 = | 21 (0.060) | 39 (0.150) | 22/224 | 31.8 | 34.4% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | = 5988935 | 133 (0.510) | intergenic (+229/‑317) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | AE015451 | = 4808174 | 14 (0.040) | 24 (0.070) | 22/278 | 37.8 | 63.8% | intergenic (‑283/‑272) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | AE015451 | 4808189 = | 14 (0.040) | intergenic (‑298/‑257) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | AE015451 | 2103125 = | 264 (0.760) | 61 (0.180) +TT |
17/290 | 42.3 | 16.7% | intergenic (+85/‑1) | PP_t23/PP_t24 | tRNA‑Gly/tRNA‑Gly |
| ? | AE015451 | = 2242257 | 354 (1.020) | noncoding (76/76 nt) | PP_t30 | tRNA‑Glu | |||||
| * | ? | AE015451 | 2103125 = | 264 (0.760) | 61 (0.180) +TT |
17/290 | 42.3 | 18.8% | intergenic (+85/‑1) | PP_t23/PP_t24 | tRNA‑Gly/tRNA‑Gly |
| ? | AE015451 | = 2242002 | 270 (0.780) | noncoding (76/76 nt) | PP_t28 | tRNA‑Glu | |||||
| * | ? | AE015451 | 2103125 = | 264 (0.760) | 61 (0.180) +TT |
17/290 | 42.3 | 20.8% | intergenic (+85/‑1) | PP_t23/PP_t24 | tRNA‑Gly/tRNA‑Gly |
| ? | AE015451 | = 2241757 | 206 (0.600) | noncoding (76/76 nt) | PP_t26 | tRNA‑Glu | |||||
| * | ? | AE015451 | 2478409 = | 236 (0.680) | 9 (0.030) | 9/242 | 43.7 | 4.4% | coding (106/444 nt) | PP_2172 | conserved exported protein of unknown function |
| ? | AE015451 | = 2478405 | 198 (0.700) | coding (102/444 nt) | PP_2172 | conserved exported protein of unknown function | |||||
| * | ? | AE015451 | = 1780066 | 230 (0.660) | 11 (0.030) | 11/280 | 45.9 | 4.7% | intergenic (+25/+81) | PP_1587/dapC | NhaP‑type Na+/H+ and K+/H+ antiporters/N‑succinyl‑L,L‑diaminopimelate aminotransferase alternative |
| ? | AE015451 | 1780129 = | 230 (0.700) | intergenic (+88/+18) | PP_1587/dapC | NhaP‑type Na+/H+ and K+/H+ antiporters/N‑succinyl‑L,L‑diaminopimelate aminotransferase alternative | |||||
| * | ? | AE015451 | = 147386 | 360 (1.040) | 4 (0.010) | 4/276 | 52.5 | 1.2% | coding (1144/1230 nt) | PP_0138 | conserved membrane protein of unknown function |
| ? | AE015451 | 147849 = | 305 (0.940) | coding (241/636 nt) | PP_0139 | putative Lipoprotein | |||||
| * | ? | AE015451 | = 2428169 | 323 (0.930) | 3 (0.010) | 3/268 | 53.0 | 0.98% | coding (94/936 nt) | PP_2128 | putative CheV‑like chemotaxis protein |
| ? | AE015451 | 2428467 = | 313 (0.990) | coding (392/936 nt) | PP_2128 | putative CheV‑like chemotaxis protein | |||||
| * | ? | AE015451 | = 1130676 | 350 (1.010) | 3 (0.010) | 3/270 | 53.2 | 0.94% | intergenic (‑41/+33) | PP_0990/PP_0991 | DoxX family protein/conserved protein of unknown function |
| ? | AE015451 | 1131305 = | 309 (0.970) | coding (178/774 nt) | PP_0991 | conserved protein of unknown function | |||||